Calcium in PDB 1pwb: High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Protein crystallography data
The structure of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose, PDB code: 1pwb
was solved by
A.K.Shrive,
H.A.Tharia,
P.Strong,
U.Kishore,
I.Burns,
P.J.Rizkallah,
K.B.Reid,
T.J.Greenhough,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
32.10 /
1.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
55.480,
108.300,
55.780,
90.00,
91.43,
90.00
|
R / Rfree (%)
|
20.5 /
22.8
|
Calcium Binding Sites:
The binding sites of Calcium atom in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
(pdb code 1pwb). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose, PDB code: 1pwb:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 1 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca401
b:13.6
occ:1.00
|
OD1
|
A:ASP342
|
2.4
|
11.6
|
1.0
|
OD1
|
A:ASN341
|
2.4
|
12.1
|
1.0
|
OE1
|
A:GLU329
|
2.5
|
13.2
|
1.0
|
OE1
|
A:GLU321
|
2.5
|
14.1
|
1.0
|
O3
|
A:GLC405
|
2.5
|
13.8
|
1.0
|
OD1
|
A:ASN323
|
2.5
|
15.1
|
1.0
|
O4
|
A:GLC405
|
2.6
|
12.8
|
1.0
|
O
|
A:ASP342
|
2.7
|
11.6
|
1.0
|
C4
|
A:GLC405
|
3.3
|
16.2
|
1.0
|
CD
|
A:GLU321
|
3.3
|
14.7
|
1.0
|
C3
|
A:GLC405
|
3.3
|
15.9
|
1.0
|
CG
|
A:ASP342
|
3.4
|
12.2
|
1.0
|
CG
|
A:ASN341
|
3.4
|
11.7
|
1.0
|
CG
|
A:ASN323
|
3.5
|
16.5
|
1.0
|
CD
|
A:GLU329
|
3.5
|
13.4
|
1.0
|
OE2
|
A:GLU321
|
3.6
|
15.7
|
1.0
|
C
|
A:ASP342
|
3.7
|
11.3
|
1.0
|
N
|
A:ASP342
|
3.8
|
11.4
|
1.0
|
OE2
|
A:GLU329
|
3.8
|
13.7
|
1.0
|
ND2
|
A:ASN341
|
3.9
|
12.4
|
1.0
|
ND2
|
A:ASN323
|
3.9
|
18.4
|
1.0
|
OD2
|
A:ASP342
|
4.1
|
11.2
|
1.0
|
N
|
A:ASN323
|
4.2
|
14.6
|
1.0
|
CA
|
A:ASP342
|
4.2
|
11.6
|
1.0
|
CB
|
A:ASP342
|
4.4
|
10.7
|
1.0
|
C
|
A:ASN341
|
4.6
|
12.2
|
1.0
|
CG
|
A:GLU321
|
4.6
|
13.9
|
1.0
|
CB
|
A:ASP325
|
4.6
|
15.3
|
1.0
|
CB
|
A:ASN323
|
4.7
|
14.7
|
1.0
|
CB
|
A:ASN341
|
4.7
|
11.2
|
1.0
|
N
|
A:ASP325
|
4.7
|
13.7
|
1.0
|
C2
|
A:GLC405
|
4.7
|
17.4
|
1.0
|
N
|
A:ASP324
|
4.7
|
12.5
|
1.0
|
C5
|
A:GLC405
|
4.8
|
17.5
|
1.0
|
CG
|
A:GLU329
|
4.8
|
13.7
|
1.0
|
CA
|
A:ASN323
|
4.8
|
14.1
|
1.0
|
CA
|
A:ASN341
|
4.9
|
11.8
|
1.0
|
N
|
A:ARG343
|
4.9
|
11.7
|
1.0
|
CB
|
A:GLU329
|
5.0
|
12.3
|
1.0
|
CB
|
A:GLU321
|
5.0
|
14.7
|
1.0
|
|
Calcium binding site 2 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 2 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca402
b:13.3
occ:1.00
|
OD1
|
A:ASP330
|
2.4
|
13.4
|
1.0
|
O
|
A:GLU329
|
2.4
|
11.4
|
1.0
|
OD1
|
A:ASP324
|
2.5
|
13.3
|
1.0
|
OE1
|
A:GLU301
|
2.5
|
13.1
|
1.0
|
O
|
A:HOH411
|
2.5
|
12.2
|
1.0
|
OE2
|
A:GLU301
|
2.5
|
13.9
|
1.0
|
OD2
|
A:ASP297
|
2.5
|
12.9
|
1.0
|
OD1
|
A:ASP297
|
2.7
|
12.9
|
1.0
|
CD
|
A:GLU301
|
2.8
|
14.2
|
1.0
|
CG
|
A:ASP297
|
3.0
|
11.6
|
1.0
|
CG
|
A:ASP324
|
3.3
|
13.6
|
1.0
|
C
|
A:GLU329
|
3.3
|
10.8
|
1.0
|
CG
|
A:ASP330
|
3.5
|
14.5
|
1.0
|
CA
|
A:ASP330
|
3.8
|
12.0
|
1.0
|
CA
|
A:CA403
|
3.9
|
15.8
|
1.0
|
N
|
A:ASP330
|
3.9
|
10.9
|
1.0
|
CB
|
A:ASP324
|
4.0
|
11.7
|
1.0
|
OD2
|
A:ASP324
|
4.1
|
14.9
|
1.0
|
CB
|
A:ASP330
|
4.2
|
12.7
|
1.0
|
N
|
A:GLU329
|
4.3
|
13.7
|
1.0
|
O
|
A:HOH475
|
4.3
|
23.2
|
1.0
|
CG
|
A:GLU301
|
4.3
|
14.8
|
1.0
|
CA
|
A:GLU329
|
4.4
|
12.4
|
1.0
|
CZ
|
A:PHE304
|
4.5
|
11.9
|
1.0
|
OD2
|
A:ASP330
|
4.5
|
15.9
|
1.0
|
CB
|
A:ASP297
|
4.5
|
13.2
|
1.0
|
CA
|
A:ASP324
|
4.5
|
12.6
|
1.0
|
OD2
|
A:ASP342
|
4.6
|
11.2
|
1.0
|
N
|
A:GLY302
|
4.6
|
16.6
|
1.0
|
O
|
A:ASP297
|
4.8
|
14.9
|
1.0
|
O
|
A:HOH426
|
4.8
|
16.3
|
1.0
|
O
|
A:HOH414
|
4.8
|
16.1
|
1.0
|
O
|
A:HOH417
|
4.9
|
14.7
|
1.0
|
CB
|
A:GLU329
|
4.9
|
12.3
|
1.0
|
CE1
|
A:PHE304
|
5.0
|
12.7
|
1.0
|
CA
|
A:GLU301
|
5.0
|
15.7
|
1.0
|
C
|
A:ASP330
|
5.0
|
11.7
|
1.0
|
|
Calcium binding site 3 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 3 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca403
b:15.8
occ:1.00
|
O
|
A:HOH417
|
2.4
|
14.7
|
1.0
|
OE1
|
A:GLU301
|
2.4
|
13.1
|
1.0
|
O
|
A:HOH461
|
2.4
|
17.7
|
1.0
|
O
|
A:HOH564
|
2.5
|
48.7
|
1.0
|
O
|
A:HOH475
|
2.5
|
23.2
|
1.0
|
OD2
|
A:ASP330
|
2.6
|
15.9
|
1.0
|
OD1
|
A:ASP330
|
2.6
|
13.4
|
1.0
|
CG
|
A:ASP330
|
2.9
|
14.5
|
1.0
|
CD
|
A:GLU301
|
3.5
|
14.2
|
1.0
|
CA
|
A:CA402
|
3.9
|
13.3
|
1.0
|
CB
|
A:GLU301
|
4.2
|
15.2
|
1.0
|
CG
|
A:GLU301
|
4.3
|
14.8
|
1.0
|
OD1
|
A:ASP324
|
4.3
|
13.3
|
1.0
|
O
|
A:ASP297
|
4.4
|
14.9
|
1.0
|
CB
|
A:ASP330
|
4.5
|
12.7
|
1.0
|
OE2
|
A:GLU301
|
4.5
|
13.9
|
1.0
|
OD1
|
A:ASP297
|
4.7
|
12.9
|
1.0
|
CA
|
A:GLU301
|
4.7
|
15.7
|
1.0
|
OD2
|
A:ASP324
|
4.8
|
14.9
|
1.0
|
O
|
A:HOH425
|
4.9
|
16.2
|
1.0
|
O
|
A:GLY327
|
4.9
|
18.0
|
1.0
|
CG
|
A:ASP324
|
5.0
|
13.6
|
1.0
|
|
Calcium binding site 4 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 4 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca401
b:10.8
occ:1.00
|
OD1
|
B:ASP342
|
2.4
|
10.8
|
1.0
|
OE1
|
B:GLU329
|
2.4
|
11.4
|
1.0
|
OD1
|
B:ASN341
|
2.5
|
12.3
|
1.0
|
OD1
|
B:ASN323
|
2.5
|
11.7
|
1.0
|
O4
|
B:GLC405
|
2.5
|
12.0
|
1.0
|
O3
|
B:GLC405
|
2.6
|
13.3
|
1.0
|
O
|
B:ASP342
|
2.6
|
10.9
|
1.0
|
OE1
|
B:GLU321
|
2.6
|
11.6
|
1.0
|
C4
|
B:GLC405
|
3.3
|
15.4
|
1.0
|
C3
|
B:GLC405
|
3.3
|
16.0
|
1.0
|
CG
|
B:ASP342
|
3.4
|
11.0
|
1.0
|
CD
|
B:GLU329
|
3.4
|
10.4
|
1.0
|
CG
|
B:ASN341
|
3.5
|
11.5
|
1.0
|
CD
|
B:GLU321
|
3.5
|
10.2
|
1.0
|
CG
|
B:ASN323
|
3.5
|
12.0
|
1.0
|
C
|
B:ASP342
|
3.6
|
10.7
|
1.0
|
OE2
|
B:GLU329
|
3.7
|
11.2
|
1.0
|
N
|
B:ASP342
|
3.7
|
10.6
|
1.0
|
OE2
|
B:GLU321
|
3.8
|
13.2
|
1.0
|
ND2
|
B:ASN341
|
3.9
|
10.8
|
1.0
|
ND2
|
B:ASN323
|
4.0
|
12.3
|
1.0
|
OD2
|
B:ASP342
|
4.1
|
11.1
|
1.0
|
CA
|
B:ASP342
|
4.1
|
10.8
|
1.0
|
N
|
B:ASN323
|
4.2
|
11.3
|
1.0
|
CB
|
B:ASP342
|
4.3
|
10.2
|
1.0
|
C
|
B:ASN341
|
4.5
|
11.3
|
1.0
|
CB
|
B:ASP325
|
4.5
|
16.3
|
1.0
|
CB
|
B:ASN323
|
4.7
|
12.2
|
1.0
|
N
|
B:ASP325
|
4.7
|
13.1
|
1.0
|
CG
|
B:GLU329
|
4.7
|
11.3
|
1.0
|
CB
|
B:ASN341
|
4.7
|
10.9
|
1.0
|
CG
|
B:GLU321
|
4.7
|
11.1
|
1.0
|
N
|
B:ASP324
|
4.7
|
11.6
|
1.0
|
C5
|
B:GLC405
|
4.7
|
18.6
|
1.0
|
C2
|
B:GLC405
|
4.8
|
19.1
|
1.0
|
N
|
B:ARG343
|
4.8
|
11.0
|
1.0
|
CA
|
B:ASN323
|
4.8
|
11.3
|
1.0
|
CA
|
B:ASN341
|
4.8
|
10.8
|
1.0
|
CB
|
B:GLU329
|
4.9
|
12.3
|
1.0
|
C
|
B:ASN323
|
5.0
|
12.0
|
1.0
|
|
Calcium binding site 5 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 5 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca402
b:12.8
occ:1.00
|
OD1
|
B:ASP330
|
2.4
|
14.3
|
1.0
|
O
|
B:HOH409
|
2.4
|
13.3
|
1.0
|
O
|
B:GLU329
|
2.5
|
10.8
|
1.0
|
OD2
|
B:ASP297
|
2.5
|
15.8
|
1.0
|
OE2
|
B:GLU301
|
2.5
|
14.7
|
1.0
|
OE1
|
B:GLU301
|
2.5
|
14.9
|
1.0
|
OD1
|
B:ASP324
|
2.5
|
15.1
|
1.0
|
OD1
|
B:ASP297
|
2.7
|
14.8
|
1.0
|
CD
|
B:GLU301
|
2.8
|
14.4
|
1.0
|
CG
|
B:ASP297
|
3.0
|
14.5
|
1.0
|
C
|
B:GLU329
|
3.4
|
11.8
|
1.0
|
CG
|
B:ASP324
|
3.4
|
15.3
|
1.0
|
CG
|
B:ASP330
|
3.6
|
14.8
|
1.0
|
CA
|
B:ASP330
|
3.8
|
12.0
|
1.0
|
CA
|
B:CA403
|
3.9
|
18.1
|
1.0
|
O
|
B:HOH417
|
3.9
|
16.0
|
1.0
|
N
|
B:ASP330
|
4.0
|
12.2
|
1.0
|
CB
|
B:ASP324
|
4.0
|
12.8
|
1.0
|
OD2
|
B:ASP324
|
4.2
|
16.6
|
1.0
|
CB
|
B:ASP330
|
4.2
|
13.1
|
1.0
|
CG
|
B:GLU301
|
4.3
|
15.2
|
1.0
|
O
|
B:HOH465
|
4.4
|
27.1
|
1.0
|
N
|
B:GLU329
|
4.5
|
13.9
|
1.0
|
CB
|
B:ASP297
|
4.5
|
13.6
|
1.0
|
CA
|
B:GLU329
|
4.5
|
12.5
|
1.0
|
OD2
|
B:ASP330
|
4.5
|
15.8
|
1.0
|
CZ
|
B:PHE304
|
4.5
|
12.8
|
1.0
|
CA
|
B:ASP324
|
4.6
|
12.6
|
1.0
|
OD2
|
B:ASP342
|
4.6
|
11.1
|
1.0
|
N
|
B:GLY302
|
4.7
|
18.1
|
1.0
|
O
|
B:ASP297
|
4.8
|
16.4
|
1.0
|
O
|
B:HOH461
|
4.9
|
23.9
|
1.0
|
O
|
B:HOH420
|
4.9
|
16.9
|
1.0
|
CA
|
B:GLU301
|
5.0
|
18.9
|
1.0
|
CE1
|
B:PHE304
|
5.0
|
11.8
|
1.0
|
C
|
B:ASP330
|
5.0
|
11.5
|
1.0
|
|
Calcium binding site 6 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 6 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca403
b:18.1
occ:1.00
|
O
|
B:HOH420
|
2.2
|
16.9
|
1.0
|
O
|
B:HOH429
|
2.3
|
19.2
|
1.0
|
OE1
|
B:GLU301
|
2.4
|
14.9
|
1.0
|
O
|
B:HOH417
|
2.4
|
16.0
|
1.0
|
O
|
B:HOH501
|
2.4
|
23.1
|
1.0
|
OD1
|
B:ASP330
|
2.5
|
14.3
|
1.0
|
OD2
|
B:ASP330
|
2.5
|
15.8
|
1.0
|
CG
|
B:ASP330
|
2.9
|
14.8
|
1.0
|
CD
|
B:GLU301
|
3.6
|
14.4
|
1.0
|
CA
|
B:CA402
|
3.9
|
12.8
|
1.0
|
CB
|
B:GLU301
|
4.2
|
17.6
|
1.0
|
O
|
B:HOH466
|
4.2
|
22.0
|
1.0
|
O
|
B:ASP297
|
4.3
|
16.4
|
1.0
|
CG
|
B:GLU301
|
4.3
|
15.2
|
1.0
|
OD1
|
B:ASP324
|
4.3
|
15.1
|
1.0
|
CB
|
B:ASP330
|
4.4
|
13.1
|
1.0
|
O
|
B:HOH580
|
4.4
|
35.6
|
1.0
|
OE2
|
B:GLU301
|
4.5
|
14.7
|
1.0
|
O
|
B:HOH487
|
4.6
|
25.3
|
1.0
|
OD1
|
B:ASP297
|
4.7
|
14.8
|
1.0
|
CA
|
B:GLU301
|
4.7
|
18.9
|
1.0
|
O
|
B:HOH578
|
4.8
|
38.7
|
1.0
|
OD2
|
B:ASP297
|
4.8
|
15.8
|
1.0
|
OD2
|
B:ASP324
|
4.9
|
16.6
|
1.0
|
CG
|
B:ASP297
|
5.0
|
14.5
|
1.0
|
|
Calcium binding site 7 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 7 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca401
b:13.0
occ:1.00
|
OD1
|
C:ASP342
|
2.3
|
10.8
|
1.0
|
OD1
|
C:ASN341
|
2.4
|
12.0
|
1.0
|
OE1
|
C:GLU329
|
2.4
|
12.6
|
1.0
|
OD1
|
C:ASN323
|
2.5
|
11.2
|
1.0
|
O3
|
C:GLC405
|
2.5
|
13.0
|
1.0
|
OE1
|
C:GLU321
|
2.6
|
12.0
|
1.0
|
O
|
C:ASP342
|
2.6
|
10.9
|
1.0
|
O4
|
C:GLC405
|
2.7
|
14.6
|
1.0
|
CG
|
C:ASP342
|
3.3
|
10.2
|
1.0
|
C3
|
C:GLC405
|
3.4
|
18.1
|
1.0
|
C4
|
C:GLC405
|
3.4
|
18.9
|
1.0
|
CG
|
C:ASN341
|
3.4
|
12.2
|
1.0
|
CD
|
C:GLU329
|
3.4
|
13.2
|
1.0
|
CD
|
C:GLU321
|
3.4
|
12.2
|
1.0
|
CG
|
C:ASN323
|
3.5
|
12.6
|
1.0
|
C
|
C:ASP342
|
3.7
|
11.6
|
1.0
|
OE2
|
C:GLU321
|
3.7
|
13.8
|
1.0
|
N
|
C:ASP342
|
3.7
|
11.2
|
1.0
|
OE2
|
C:GLU329
|
3.8
|
13.6
|
1.0
|
ND2
|
C:ASN341
|
3.8
|
12.1
|
1.0
|
ND2
|
C:ASN323
|
4.0
|
13.6
|
1.0
|
OD2
|
C:ASP342
|
4.1
|
10.4
|
1.0
|
CA
|
C:ASP342
|
4.1
|
11.4
|
1.0
|
N
|
C:ASN323
|
4.2
|
11.1
|
1.0
|
CB
|
C:ASP342
|
4.3
|
10.8
|
1.0
|
C
|
C:ASN341
|
4.5
|
11.5
|
1.0
|
CB
|
C:ASP325
|
4.6
|
17.0
|
1.0
|
CB
|
C:ASN323
|
4.7
|
11.3
|
1.0
|
CG
|
C:GLU321
|
4.7
|
10.8
|
1.0
|
N
|
C:ASP325
|
4.7
|
12.3
|
1.0
|
CB
|
C:ASN341
|
4.7
|
11.1
|
1.0
|
CG
|
C:GLU329
|
4.7
|
11.9
|
1.0
|
N
|
C:ASP324
|
4.8
|
11.6
|
1.0
|
C2
|
C:GLC405
|
4.8
|
19.6
|
1.0
|
CA
|
C:ASN323
|
4.8
|
11.1
|
1.0
|
C5
|
C:GLC405
|
4.8
|
21.7
|
1.0
|
N
|
C:ARG343
|
4.8
|
12.6
|
1.0
|
CA
|
C:ASN341
|
4.9
|
11.4
|
1.0
|
CB
|
C:GLU329
|
4.9
|
11.7
|
1.0
|
C
|
C:ASN323
|
5.0
|
12.1
|
1.0
|
|
Calcium binding site 8 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 8 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca402
b:15.0
occ:1.00
|
O
|
C:GLU329
|
2.4
|
12.6
|
1.0
|
O
|
C:HOH406
|
2.4
|
12.1
|
1.0
|
OD1
|
C:ASP330
|
2.4
|
14.4
|
1.0
|
OD1
|
C:ASP324
|
2.5
|
13.4
|
1.0
|
OD2
|
C:ASP297
|
2.5
|
14.7
|
1.0
|
OE2
|
C:GLU301
|
2.6
|
15.3
|
1.0
|
OE1
|
C:GLU301
|
2.6
|
16.0
|
1.0
|
OD1
|
C:ASP297
|
2.7
|
13.4
|
1.0
|
CD
|
C:GLU301
|
2.9
|
17.2
|
1.0
|
CG
|
C:ASP297
|
3.0
|
14.3
|
1.0
|
CG
|
C:ASP324
|
3.3
|
13.4
|
1.0
|
C
|
C:GLU329
|
3.3
|
13.4
|
1.0
|
CG
|
C:ASP330
|
3.6
|
16.8
|
1.0
|
CA
|
C:ASP330
|
3.8
|
13.5
|
1.0
|
O
|
C:HOH417
|
3.9
|
16.1
|
1.0
|
CA
|
C:CA403
|
3.9
|
17.8
|
1.0
|
CB
|
C:ASP324
|
3.9
|
12.4
|
1.0
|
N
|
C:ASP330
|
3.9
|
12.6
|
1.0
|
OD2
|
C:ASP324
|
4.2
|
13.3
|
1.0
|
CB
|
C:ASP330
|
4.3
|
14.4
|
1.0
|
CG
|
C:GLU301
|
4.4
|
17.1
|
1.0
|
N
|
C:GLU329
|
4.4
|
15.2
|
1.0
|
CA
|
C:ASP324
|
4.4
|
11.5
|
1.0
|
CA
|
C:GLU329
|
4.4
|
13.2
|
1.0
|
CZ
|
C:PHE304
|
4.5
|
15.2
|
1.0
|
OD2
|
C:ASP330
|
4.5
|
17.2
|
1.0
|
CB
|
C:ASP297
|
4.5
|
14.8
|
1.0
|
OD2
|
C:ASP342
|
4.6
|
10.4
|
1.0
|
N
|
C:GLY302
|
4.7
|
18.9
|
1.0
|
O
|
C:ASP297
|
4.8
|
17.5
|
1.0
|
CE1
|
C:PHE304
|
4.9
|
14.1
|
1.0
|
O
|
C:HOH433
|
4.9
|
20.4
|
1.0
|
O
|
C:HOH441
|
4.9
|
16.8
|
1.0
|
CB
|
C:GLU329
|
5.0
|
11.7
|
1.0
|
CA
|
C:GLU301
|
5.0
|
19.5
|
1.0
|
C
|
C:ASP330
|
5.0
|
12.3
|
1.0
|
O
|
C:HOH409
|
5.0
|
15.0
|
1.0
|
|
Calcium binding site 9 out
of 9 in 1pwb
Go back to
Calcium Binding Sites List in 1pwb
Calcium binding site 9 out
of 9 in the High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of High Resolution Crystal Structure of An Active Recombinant Fragment of Human Lung Surfactant Protein D with Maltose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca403
b:17.8
occ:1.00
|
OE1
|
C:GLU301
|
2.3
|
16.0
|
1.0
|
O
|
C:HOH417
|
2.3
|
16.1
|
1.0
|
O
|
C:HOH418
|
2.4
|
18.6
|
1.0
|
O
|
C:HOH441
|
2.4
|
16.8
|
1.0
|
OD2
|
C:ASP330
|
2.5
|
17.2
|
1.0
|
OD1
|
C:ASP330
|
2.5
|
14.4
|
1.0
|
O
|
C:HOH489
|
2.6
|
23.3
|
1.0
|
CG
|
C:ASP330
|
2.9
|
16.8
|
1.0
|
CD
|
C:GLU301
|
3.5
|
17.2
|
1.0
|
CA
|
C:CA402
|
3.9
|
15.0
|
1.0
|
CB
|
C:GLU301
|
4.1
|
18.8
|
1.0
|
CG
|
C:GLU301
|
4.2
|
17.1
|
1.0
|
O
|
C:HOH446
|
4.2
|
19.8
|
1.0
|
OD1
|
C:ASP324
|
4.2
|
13.4
|
1.0
|
O
|
C:ASP297
|
4.4
|
17.5
|
1.0
|
CB
|
C:ASP330
|
4.4
|
14.4
|
1.0
|
OE2
|
C:GLU301
|
4.4
|
15.3
|
1.0
|
CA
|
C:GLU301
|
4.6
|
19.5
|
1.0
|
O
|
C:HOH520
|
4.7
|
30.9
|
1.0
|
OD1
|
C:ASP297
|
4.7
|
13.4
|
1.0
|
OD2
|
C:ASP324
|
4.9
|
13.3
|
1.0
|
O
|
C:HOH422
|
4.9
|
19.2
|
1.0
|
OD2
|
C:ASP297
|
4.9
|
14.7
|
1.0
|
CG
|
C:ASP324
|
4.9
|
13.4
|
1.0
|
|
Reference:
A.K.Shrive,
H.A.Tharia,
P.Strong,
U.Kishore,
I.Burns,
P.J.Rizkallah,
K.B.Reid,
T.J.Greenhough.
High-Resolution Structural Insights Into Ligand Binding and Immune Cell Recognition By Human Lung Surfactant Protein D J.Mol.Biol. V. 331 509 2003.
ISSN: ISSN 0022-2836
PubMed: 12888356
DOI: 10.1016/S0022-2836(03)00761-7
Page generated: Thu Jul 11 13:54:14 2024
|