Calcium in PDB 1q55: W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
48;
Binding sites:
The binding sites of Calcium atom in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
(pdb code 1q55). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 48 binding sites of Calcium where determined in the
W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography, PDB code: 1q55:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 1 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca905
b:22.4
occ:1.00
|
CA
|
B:SER508
|
0.2
|
0.0
|
1.0
|
CB
|
B:ARG443
|
0.7
|
95.2
|
1.0
|
N
|
B:ASN526
|
0.8
|
0.0
|
1.0
|
CG
|
B:ARG443
|
0.8
|
95.2
|
1.0
|
NZ
|
A:LYS107
|
0.9
|
100.0
|
1.0
|
CD
|
A:LYS107
|
1.0
|
100.0
|
1.0
|
C
|
B:VAL525
|
1.1
|
0.0
|
1.0
|
O
|
A:ARG105
|
1.1
|
90.2
|
1.0
|
CG
|
A:LYS107
|
1.2
|
100.0
|
1.0
|
CB
|
A:LYS107
|
1.2
|
100.0
|
1.0
|
CE
|
A:LYS107
|
1.2
|
100.0
|
1.0
|
N
|
B:SER508
|
1.2
|
0.0
|
1.0
|
OD1
|
A:ASN102
|
1.3
|
55.7
|
1.0
|
C
|
B:SER508
|
1.4
|
0.0
|
1.0
|
CA
|
B:VAL525
|
1.4
|
0.0
|
1.0
|
C
|
A:ARG105
|
1.5
|
90.2
|
1.0
|
O
|
A:ASN104
|
1.5
|
47.5
|
1.0
|
CB
|
B:SER508
|
1.5
|
76.8
|
1.0
|
OD1
|
A:ASN143
|
1.6
|
34.4
|
1.0
|
OD2
|
A:ASP134
|
1.6
|
51.6
|
1.0
|
CA
|
B:ARG443
|
1.7
|
83.8
|
1.0
|
O
|
B:SER508
|
1.7
|
0.0
|
1.0
|
CG
|
A:ASN143
|
1.8
|
34.4
|
1.0
|
CA
|
B:ASN526
|
1.8
|
0.0
|
1.0
|
NH1
|
B:ARG443
|
1.8
|
95.2
|
1.0
|
C
|
A:PRO106
|
1.9
|
47.0
|
1.0
|
CD
|
B:ARG443
|
1.9
|
95.2
|
1.0
|
N
|
A:PRO106
|
1.9
|
47.0
|
1.0
|
O
|
B:ARG443
|
1.9
|
83.8
|
1.0
|
CA
|
A:PRO106
|
1.9
|
47.0
|
1.0
|
CG
|
A:ASP134
|
1.9
|
51.6
|
1.0
|
O
|
A:PRO106
|
1.9
|
47.0
|
1.0
|
O
|
A:ASN143
|
2.0
|
41.2
|
1.0
|
OD1
|
A:ASP134
|
2.0
|
51.6
|
1.0
|
CB
|
A:ASN143
|
2.0
|
34.4
|
1.0
|
N
|
B:VAL525
|
2.0
|
0.0
|
1.0
|
O
|
B:VAL525
|
2.1
|
0.0
|
1.0
|
CA
|
A:ASN143
|
2.2
|
41.2
|
1.0
|
N
|
B:ILE509
|
2.3
|
85.9
|
1.0
|
CG
|
A:ASN102
|
2.3
|
55.7
|
1.0
|
ND2
|
A:ASN143
|
2.3
|
34.4
|
1.0
|
C
|
B:TYR507
|
2.3
|
0.0
|
1.0
|
CA
|
A:LYS107
|
2.3
|
33.5
|
1.0
|
N
|
A:LYS107
|
2.3
|
33.5
|
1.0
|
OG
|
B:SER508
|
2.4
|
76.8
|
1.0
|
C
|
B:ARG443
|
2.4
|
83.8
|
1.0
|
C
|
A:ASN104
|
2.5
|
47.5
|
1.0
|
OD1
|
B:ASN526
|
2.6
|
97.7
|
1.0
|
N
|
B:ARG443
|
2.6
|
83.8
|
1.0
|
CD2
|
B:LEU481
|
2.7
|
72.1
|
1.0
|
OD2
|
A:ASP136
|
2.7
|
42.7
|
1.0
|
C
|
A:ASN143
|
2.7
|
41.2
|
1.0
|
CA
|
A:ARG105
|
2.7
|
90.2
|
1.0
|
CB
|
B:VAL525
|
2.7
|
54.0
|
1.0
|
OD2
|
A:ASP195
|
2.8
|
34.4
|
1.0
|
CB
|
A:ASN102
|
2.8
|
55.7
|
1.0
|
C
|
B:VAL524
|
2.8
|
0.0
|
1.0
|
O
|
B:TYR507
|
2.8
|
0.0
|
1.0
|
CZ
|
B:ARG443
|
2.9
|
95.2
|
1.0
|
CB
|
B:ASN526
|
2.9
|
97.7
|
1.0
|
NE
|
B:ARG443
|
2.9
|
95.2
|
1.0
|
N
|
A:ARG105
|
2.9
|
90.2
|
1.0
|
OD1
|
A:ASP195
|
2.9
|
34.4
|
1.0
|
O
|
B:VAL524
|
3.0
|
0.0
|
1.0
|
C
|
B:ASN526
|
3.0
|
0.0
|
1.0
|
CG
|
B:ASN526
|
3.0
|
97.7
|
1.0
|
CG1
|
B:VAL525
|
3.1
|
54.0
|
1.0
|
O
|
B:SER441
|
3.1
|
0.0
|
1.0
|
CD
|
A:PRO106
|
3.2
|
47.0
|
1.0
|
CG
|
A:ASP195
|
3.2
|
34.4
|
1.0
|
N
|
A:ASN143
|
3.2
|
41.2
|
1.0
|
CB
|
B:TYR507
|
3.3
|
0.0
|
1.0
|
O
|
A:THR133
|
3.3
|
87.0
|
1.0
|
CB
|
A:ASP134
|
3.3
|
51.6
|
1.0
|
CA
|
A:ASN102
|
3.3
|
33.5
|
1.0
|
CG2
|
B:VAL525
|
3.3
|
54.0
|
1.0
|
CB
|
A:PRO106
|
3.3
|
47.0
|
1.0
|
CA
|
B:TYR507
|
3.3
|
0.0
|
1.0
|
ND2
|
A:ASN102
|
3.3
|
55.7
|
1.0
|
CD1
|
B:TYR507
|
3.4
|
0.0
|
1.0
|
CA
|
A:ASP134
|
3.4
|
47.4
|
1.0
|
O
|
B:ASN526
|
3.4
|
0.0
|
1.0
|
C
|
B:PRO442
|
3.5
|
82.0
|
1.0
|
CA
|
A:ASN104
|
3.5
|
47.5
|
1.0
|
CB
|
A:ASN104
|
3.5
|
79.0
|
1.0
|
C
|
A:LYS107
|
3.6
|
33.5
|
1.0
|
CG
|
A:ASP136
|
3.6
|
42.7
|
1.0
|
CD2
|
A:LEU196
|
3.6
|
32.8
|
1.0
|
CB
|
A:ASP136
|
3.6
|
42.7
|
1.0
|
CA
|
B:ILE509
|
3.7
|
85.9
|
1.0
|
O
|
B:PRO442
|
3.7
|
82.0
|
1.0
|
N
|
B:VAL444
|
3.7
|
0.0
|
1.0
|
N
|
B:ALA527
|
3.7
|
90.4
|
1.0
|
CG
|
B:TYR507
|
3.8
|
0.0
|
1.0
|
OD1
|
A:ASP111
|
3.8
|
85.6
|
1.0
|
CA
|
B:VAL524
|
3.8
|
0.0
|
1.0
|
CG
|
B:LEU481
|
3.9
|
72.1
|
1.0
|
CG
|
A:ASP111
|
3.9
|
85.6
|
1.0
|
N
|
A:ASN102
|
3.9
|
33.5
|
1.0
|
CB
|
A:ASP111
|
3.9
|
85.6
|
1.0
|
CG2
|
B:ILE509
|
3.9
|
50.8
|
1.0
|
CB
|
A:ARG105
|
4.0
|
71.2
|
1.0
|
CG
|
A:PRO106
|
4.0
|
47.0
|
1.0
|
NH2
|
B:ARG443
|
4.0
|
95.2
|
1.0
|
N
|
A:GLY144
|
4.0
|
31.3
|
1.0
|
N
|
A:PHE108
|
4.1
|
20.8
|
1.0
|
CB
|
B:VAL524
|
4.1
|
0.0
|
1.0
|
N
|
A:ASN104
|
4.1
|
47.5
|
1.0
|
N
|
A:GLU135
|
4.2
|
26.0
|
1.0
|
C
|
B:SER441
|
4.2
|
0.0
|
1.0
|
C
|
A:LEU142
|
4.2
|
73.0
|
1.0
|
O
|
A:LYS107
|
4.3
|
33.5
|
1.0
|
OD2
|
A:ASP111
|
4.3
|
85.6
|
1.0
|
O
|
A:PHE108
|
4.3
|
20.8
|
1.0
|
C
|
A:THR133
|
4.3
|
87.0
|
1.0
|
CA
|
B:PRO442
|
4.3
|
82.0
|
1.0
|
ND2
|
B:ASN526
|
4.3
|
97.7
|
1.0
|
O
|
B:ILE509
|
4.3
|
85.9
|
1.0
|
C
|
A:ASP134
|
4.3
|
47.4
|
1.0
|
OG
|
A:SER141
|
4.4
|
71.4
|
1.0
|
CG
|
A:ARG105
|
4.4
|
71.2
|
1.0
|
CB
|
A:SER141
|
4.4
|
71.4
|
1.0
|
C
|
A:ASN102
|
4.4
|
33.5
|
1.0
|
O
|
B:PRO440
|
4.4
|
75.5
|
1.0
|
O
|
A:LEU142
|
4.5
|
73.0
|
1.0
|
C
|
B:ILE509
|
4.5
|
85.9
|
1.0
|
N
|
A:ASP134
|
4.5
|
47.4
|
1.0
|
CB
|
B:ILE509
|
4.5
|
50.8
|
1.0
|
CE1
|
B:TYR507
|
4.5
|
0.0
|
1.0
|
CD1
|
B:LEU481
|
4.5
|
72.1
|
1.0
|
CA
|
B:VAL444
|
4.6
|
0.0
|
1.0
|
CB
|
A:ASP195
|
4.6
|
34.4
|
1.0
|
CA
|
A:GLY144
|
4.7
|
31.3
|
1.0
|
CG2
|
B:VAL444
|
4.7
|
56.0
|
1.0
|
N
|
B:TYR507
|
4.7
|
0.0
|
1.0
|
N
|
A:ASP136
|
4.7
|
14.1
|
1.0
|
CG1
|
B:VAL524
|
4.7
|
0.0
|
1.0
|
OD1
|
A:ASP136
|
4.8
|
42.7
|
1.0
|
C
|
A:GLN101
|
4.8
|
43.4
|
1.0
|
N
|
A:LEU142
|
4.8
|
73.0
|
1.0
|
OD1
|
A:ASP100
|
4.8
|
34.3
|
1.0
|
N
|
B:PRO442
|
4.9
|
82.0
|
1.0
|
CG
|
A:ASN104
|
4.9
|
79.0
|
1.0
|
N
|
A:ASP103
|
4.9
|
73.5
|
1.0
|
C1
|
B:NAG904
|
4.9
|
27.2
|
0.5
|
CB
|
B:LEU481
|
4.9
|
72.1
|
1.0
|
CG
|
A:LEU196
|
4.9
|
32.8
|
1.0
|
CA
|
A:ASP136
|
4.9
|
14.1
|
1.0
|
CA
|
A:ASP111
|
4.9
|
61.7
|
1.0
|
|
Calcium binding site 2 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 2 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca906
b:5.0
occ:1.00
|
O
|
A:ASP100
|
0.8
|
42.9
|
1.0
|
N
|
A:GLN101
|
0.9
|
43.4
|
1.0
|
ND2
|
A:ASN104
|
0.9
|
79.0
|
1.0
|
CG1
|
B:VAL444
|
0.9
|
56.0
|
1.0
|
C
|
A:ASP100
|
0.9
|
42.9
|
1.0
|
NZ
|
B:LYS503
|
1.0
|
100.0
|
1.0
|
CD
|
B:LYS503
|
1.2
|
100.0
|
1.0
|
CE
|
B:LYS503
|
1.3
|
100.0
|
1.0
|
O
|
B:ALA527
|
1.3
|
90.4
|
1.0
|
CB
|
B:VAL444
|
1.4
|
56.0
|
1.0
|
N
|
B:THR528
|
1.5
|
87.7
|
1.0
|
C
|
B:ALA527
|
1.5
|
90.4
|
1.0
|
O
|
B:GLY505
|
1.6
|
0.0
|
1.0
|
OD1
|
A:ASP136
|
1.7
|
42.7
|
1.0
|
CG
|
A:ASN104
|
1.8
|
79.0
|
1.0
|
OE2
|
A:GLU69
|
1.8
|
15.8
|
1.0
|
CA
|
A:ASP100
|
1.9
|
42.9
|
1.0
|
CD
|
A:GLU69
|
2.0
|
15.8
|
1.0
|
CA
|
A:GLN101
|
2.0
|
43.4
|
1.0
|
OD2
|
A:ASP103
|
2.0
|
33.9
|
1.0
|
O
|
A:GLN101
|
2.0
|
43.4
|
1.0
|
N
|
B:ASP506
|
2.0
|
0.0
|
1.0
|
OD1
|
A:ASN104
|
2.0
|
79.0
|
1.0
|
C
|
B:GLY505
|
2.1
|
0.0
|
1.0
|
CD2
|
B:TYR507
|
2.1
|
0.0
|
1.0
|
CA
|
B:VAL444
|
2.2
|
0.0
|
1.0
|
C
|
B:ASP506
|
2.2
|
0.0
|
1.0
|
OE1
|
A:GLU11
|
2.2
|
21.0
|
1.0
|
N
|
B:TYR507
|
2.2
|
0.0
|
1.0
|
OD1
|
A:ASP100
|
2.3
|
34.3
|
1.0
|
CA
|
B:ASP506
|
2.3
|
0.0
|
1.0
|
CA
|
B:THR528
|
2.4
|
87.7
|
1.0
|
CG
|
A:ASP100
|
2.4
|
34.3
|
1.0
|
CG2
|
B:VAL444
|
2.4
|
56.0
|
1.0
|
C
|
B:VAL444
|
2.4
|
0.0
|
1.0
|
CA
|
B:ALA527
|
2.5
|
90.4
|
1.0
|
OG1
|
B:THR528
|
2.5
|
88.7
|
1.0
|
OE1
|
A:GLU69
|
2.5
|
15.8
|
1.0
|
OE1
|
A:GLU135
|
2.5
|
99.1
|
1.0
|
CG
|
A:GLU69
|
2.6
|
15.8
|
1.0
|
C
|
A:GLN101
|
2.7
|
43.4
|
1.0
|
O
|
B:VAL444
|
2.7
|
0.0
|
1.0
|
CG
|
B:LYS503
|
2.7
|
100.0
|
1.0
|
N
|
B:ALA527
|
2.8
|
90.4
|
1.0
|
CG
|
A:ASP103
|
2.8
|
33.9
|
1.0
|
N
|
A:ASP100
|
2.8
|
42.9
|
1.0
|
OD2
|
A:ASP100
|
2.8
|
34.3
|
1.0
|
CB
|
A:GLN101
|
2.8
|
71.4
|
1.0
|
N
|
B:PHE445
|
2.8
|
97.2
|
1.0
|
CB
|
A:ASP100
|
2.8
|
34.3
|
1.0
|
CG
|
A:ASP136
|
2.9
|
42.7
|
1.0
|
CG2
|
A:ILE99
|
2.9
|
36.3
|
1.0
|
O
|
B:ASP506
|
2.9
|
0.0
|
1.0
|
CB
|
B:THR528
|
2.9
|
88.7
|
1.0
|
CB
|
B:LYS503
|
2.9
|
100.0
|
1.0
|
OD1
|
A:ASP103
|
3.0
|
33.9
|
1.0
|
O
|
B:PHE445
|
3.0
|
97.2
|
1.0
|
O
|
A:ILE99
|
3.0
|
22.6
|
1.0
|
CB
|
A:ASN104
|
3.0
|
79.0
|
1.0
|
CG
|
B:TYR507
|
3.0
|
0.0
|
1.0
|
C
|
A:ILE99
|
3.1
|
22.6
|
1.0
|
CE2
|
B:TYR507
|
3.1
|
0.0
|
1.0
|
N
|
B:VAL444
|
3.1
|
0.0
|
1.0
|
CA
|
B:GLY505
|
3.2
|
0.0
|
1.0
|
CB
|
B:TYR507
|
3.2
|
0.0
|
1.0
|
CA
|
B:TYR507
|
3.3
|
0.0
|
1.0
|
CG
|
A:GLN101
|
3.4
|
71.4
|
1.0
|
CD
|
A:GLU11
|
3.4
|
21.0
|
1.0
|
OE2
|
A:GLU11
|
3.5
|
21.0
|
1.0
|
CD
|
A:GLU135
|
3.5
|
99.1
|
1.0
|
CB
|
A:GLU135
|
3.5
|
99.1
|
1.0
|
C
|
B:ASN526
|
3.5
|
0.0
|
1.0
|
CB
|
A:ILE99
|
3.6
|
36.3
|
1.0
|
O
|
B:ASN526
|
3.6
|
0.0
|
1.0
|
C
|
B:THR528
|
3.6
|
87.7
|
1.0
|
CB
|
B:ASP506
|
3.7
|
100.0
|
1.0
|
OD2
|
A:ASP136
|
3.7
|
42.7
|
1.0
|
O
|
B:TYR507
|
3.7
|
0.0
|
1.0
|
CB
|
B:ALA527
|
3.8
|
90.4
|
1.0
|
CB
|
A:ASP136
|
3.8
|
42.7
|
1.0
|
N
|
B:GLY505
|
3.8
|
0.0
|
1.0
|
OD1
|
B:ASP506
|
3.8
|
100.0
|
1.0
|
N
|
A:ASN102
|
3.8
|
33.5
|
1.0
|
C
|
B:PHE445
|
3.8
|
97.2
|
1.0
|
CA
|
B:PHE445
|
3.9
|
97.2
|
1.0
|
N
|
B:VAL529
|
3.9
|
0.0
|
1.0
|
CA
|
A:ASP136
|
4.0
|
14.1
|
1.0
|
CD
|
A:ARG68
|
4.0
|
39.4
|
1.0
|
CG
|
B:ASP506
|
4.0
|
100.0
|
1.0
|
CB
|
A:GLU69
|
4.0
|
15.8
|
1.0
|
C
|
B:TYR507
|
4.0
|
0.0
|
1.0
|
N
|
A:ASN104
|
4.0
|
47.5
|
1.0
|
N
|
A:ASP103
|
4.1
|
73.5
|
1.0
|
CG
|
A:ARG68
|
4.1
|
39.4
|
1.0
|
CA
|
A:ASN104
|
4.1
|
47.5
|
1.0
|
N
|
A:ASP136
|
4.1
|
14.1
|
1.0
|
NE
|
A:ARG68
|
4.2
|
39.4
|
1.0
|
CA
|
A:CA907
|
4.2
|
15.4
|
1.0
|
CA
|
A:ILE99
|
4.2
|
22.6
|
1.0
|
C
|
B:ARG443
|
4.2
|
83.8
|
1.0
|
CG
|
A:GLU135
|
4.2
|
99.1
|
1.0
|
OE2
|
A:GLU135
|
4.2
|
99.1
|
1.0
|
CB
|
A:ASP103
|
4.2
|
33.9
|
1.0
|
CB
|
B:ASN526
|
4.2
|
97.7
|
1.0
|
CG2
|
B:THR528
|
4.3
|
88.7
|
1.0
|
ND2
|
A:ASN143
|
4.3
|
34.4
|
1.0
|
C
|
B:LYS504
|
4.3
|
0.0
|
1.0
|
OG
|
A:SER10
|
4.3
|
46.9
|
1.0
|
CA
|
B:LYS503
|
4.3
|
0.0
|
1.0
|
O
|
B:LYS503
|
4.3
|
0.0
|
1.0
|
C
|
B:LYS503
|
4.3
|
0.0
|
1.0
|
CD1
|
B:TYR507
|
4.3
|
0.0
|
1.0
|
CZ
|
B:TYR507
|
4.4
|
0.0
|
1.0
|
C
|
A:GLU135
|
4.4
|
26.0
|
1.0
|
CD1
|
A:ILE99
|
4.4
|
36.3
|
1.0
|
O
|
B:THR528
|
4.4
|
87.7
|
1.0
|
O
|
B:ARG443
|
4.5
|
83.8
|
1.0
|
OD2
|
B:ASP506
|
4.5
|
100.0
|
1.0
|
O
|
B:LYS504
|
4.5
|
0.0
|
1.0
|
N
|
B:LYS504
|
4.5
|
0.0
|
1.0
|
CA
|
B:ASN526
|
4.5
|
0.0
|
1.0
|
CG2
|
B:VAL529
|
4.6
|
80.4
|
1.0
|
C
|
A:ASP103
|
4.6
|
73.5
|
1.0
|
CG
|
A:GLU11
|
4.6
|
21.0
|
1.0
|
OD2
|
A:ASP67
|
4.6
|
32.7
|
1.0
|
CA
|
A:GLU135
|
4.6
|
26.0
|
1.0
|
CA
|
A:ASP103
|
4.6
|
73.5
|
1.0
|
CA
|
A:ASN102
|
4.7
|
33.5
|
1.0
|
CB
|
A:GLU11
|
4.7
|
21.0
|
1.0
|
CG1
|
A:ILE99
|
4.7
|
36.3
|
1.0
|
CD
|
A:GLN101
|
4.7
|
71.4
|
1.0
|
O
|
A:GLU135
|
4.8
|
26.0
|
1.0
|
CB
|
B:PHE445
|
4.8
|
0.0
|
1.0
|
CE1
|
B:TYR507
|
4.9
|
0.0
|
1.0
|
N
|
B:LYS503
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 3 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 3 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca907
b:15.4
occ:1.00
|
C
|
B:LYS503
|
0.5
|
0.0
|
1.0
|
O
|
B:LYS503
|
0.7
|
0.0
|
1.0
|
OG
|
A:SER10
|
0.8
|
46.9
|
1.0
|
O
|
B:THR528
|
0.9
|
87.7
|
1.0
|
C
|
B:THR528
|
1.0
|
87.7
|
1.0
|
N
|
B:VAL529
|
1.1
|
0.0
|
1.0
|
CA
|
B:LYS503
|
1.2
|
0.0
|
1.0
|
O
|
B:PHE445
|
1.2
|
97.2
|
1.0
|
CB
|
B:VAL529
|
1.3
|
80.4
|
1.0
|
CA
|
B:VAL529
|
1.3
|
0.0
|
1.0
|
CD
|
A:GLU11
|
1.3
|
21.0
|
1.0
|
N
|
B:LYS504
|
1.4
|
0.0
|
1.0
|
CG
|
A:GLU11
|
1.4
|
21.0
|
1.0
|
CB
|
B:LYS503
|
1.4
|
100.0
|
1.0
|
CB
|
A:SER10
|
1.4
|
46.9
|
1.0
|
C
|
B:PHE445
|
1.4
|
97.2
|
1.0
|
CG2
|
B:VAL529
|
1.6
|
80.4
|
1.0
|
OG1
|
B:THR446
|
1.7
|
0.0
|
1.0
|
CB
|
A:GLU11
|
1.7
|
21.0
|
1.0
|
CA
|
B:THR446
|
1.7
|
0.0
|
1.0
|
N
|
B:THR446
|
1.8
|
0.0
|
1.0
|
OD1
|
A:ASP103
|
1.8
|
33.9
|
1.0
|
CG
|
B:LYS503
|
1.8
|
100.0
|
1.0
|
N
|
A:GLU11
|
1.9
|
30.1
|
1.0
|
OE1
|
A:GLU11
|
2.0
|
21.0
|
1.0
|
OE2
|
A:GLU11
|
2.1
|
21.0
|
1.0
|
N
|
B:GLY505
|
2.1
|
0.0
|
1.0
|
CA
|
B:THR528
|
2.2
|
87.7
|
1.0
|
CA
|
A:GLU11
|
2.2
|
30.1
|
1.0
|
O
|
A:GLU11
|
2.2
|
30.1
|
1.0
|
OD2
|
A:ASP67
|
2.4
|
32.7
|
1.0
|
OE1
|
A:GLU69
|
2.4
|
15.8
|
1.0
|
CB
|
B:THR446
|
2.4
|
0.0
|
1.0
|
CA
|
B:LYS504
|
2.4
|
0.0
|
1.0
|
C
|
A:GLU11
|
2.4
|
30.1
|
1.0
|
OD1
|
A:ASN12
|
2.5
|
43.9
|
1.0
|
CA
|
A:SER10
|
2.5
|
38.6
|
1.0
|
N
|
B:LYS503
|
2.6
|
0.0
|
1.0
|
CG1
|
B:VAL529
|
2.6
|
80.4
|
1.0
|
C
|
B:VAL529
|
2.7
|
0.0
|
1.0
|
N
|
B:THR528
|
2.7
|
87.7
|
1.0
|
CA
|
B:GLY505
|
2.8
|
0.0
|
1.0
|
C
|
A:SER10
|
2.8
|
38.6
|
1.0
|
C
|
B:LYS504
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASP67
|
2.8
|
32.7
|
1.0
|
CG
|
A:ASP103
|
2.9
|
33.9
|
1.0
|
CB
|
B:THR528
|
2.9
|
88.7
|
1.0
|
CA
|
B:PHE445
|
2.9
|
97.2
|
1.0
|
N
|
B:MET447
|
2.9
|
86.8
|
1.0
|
CG
|
A:ASN12
|
2.9
|
43.9
|
1.0
|
NE2
|
A:GLN101
|
2.9
|
71.4
|
1.0
|
O
|
B:VAL529
|
3.0
|
0.0
|
1.0
|
OD1
|
A:ASP67
|
3.0
|
32.7
|
1.0
|
CD
|
B:LYS503
|
3.1
|
100.0
|
1.0
|
C
|
B:THR446
|
3.1
|
0.0
|
1.0
|
O
|
B:VAL444
|
3.1
|
0.0
|
1.0
|
CB
|
A:GLN101
|
3.1
|
71.4
|
1.0
|
ND2
|
A:ASN12
|
3.2
|
43.9
|
1.0
|
N
|
A:ASN12
|
3.2
|
34.7
|
1.0
|
CE
|
B:LYS503
|
3.2
|
100.0
|
1.0
|
CG
|
A:GLN101
|
3.2
|
71.4
|
1.0
|
O
|
A:ILE99
|
3.3
|
22.6
|
1.0
|
CD
|
A:GLN101
|
3.4
|
71.4
|
1.0
|
OD2
|
A:ASP103
|
3.5
|
33.9
|
1.0
|
C
|
B:LEU502
|
3.5
|
0.0
|
1.0
|
C
|
B:ALA527
|
3.5
|
90.4
|
1.0
|
CG2
|
B:THR446
|
3.5
|
0.0
|
1.0
|
CG2
|
B:THR528
|
3.5
|
88.7
|
1.0
|
O
|
B:ALA527
|
3.5
|
90.4
|
1.0
|
N
|
B:PHE445
|
3.5
|
97.2
|
1.0
|
CB
|
A:ASN12
|
3.6
|
43.9
|
1.0
|
N
|
A:SER10
|
3.6
|
38.6
|
1.0
|
CB
|
A:ASP103
|
3.6
|
33.9
|
1.0
|
CB
|
B:LYS504
|
3.7
|
100.0
|
1.0
|
CD
|
A:GLU69
|
3.7
|
15.8
|
1.0
|
N
|
B:CYS530
|
3.7
|
0.0
|
1.0
|
O
|
B:LEU502
|
3.7
|
0.0
|
1.0
|
C
|
B:VAL444
|
3.7
|
0.0
|
1.0
|
C
|
B:GLY505
|
3.8
|
0.0
|
1.0
|
O
|
B:LYS504
|
3.8
|
0.0
|
1.0
|
CB
|
B:PHE445
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASP67
|
3.9
|
32.7
|
1.0
|
O
|
A:SER10
|
3.9
|
38.6
|
1.0
|
CE2
|
B:TYR507
|
3.9
|
0.0
|
1.0
|
N
|
A:GLN101
|
4.0
|
43.4
|
1.0
|
CG
|
B:LYS504
|
4.0
|
100.0
|
1.0
|
CB
|
A:GLU69
|
4.0
|
15.8
|
1.0
|
CA
|
A:ASP67
|
4.0
|
43.9
|
1.0
|
CA
|
A:ASN12
|
4.1
|
34.7
|
1.0
|
O
|
B:THR446
|
4.1
|
0.0
|
1.0
|
CG
|
A:GLU69
|
4.1
|
15.8
|
1.0
|
CA
|
A:GLN101
|
4.1
|
43.4
|
1.0
|
O
|
B:MET447
|
4.1
|
86.8
|
1.0
|
ND2
|
A:ASN104
|
4.1
|
79.0
|
1.0
|
CA
|
A:CA906
|
4.2
|
5.0
|
1.0
|
NZ
|
B:LYS503
|
4.2
|
100.0
|
1.0
|
OE1
|
A:GLN101
|
4.2
|
71.4
|
1.0
|
O
|
B:GLY505
|
4.2
|
0.0
|
1.0
|
SG
|
B:CYS539
|
4.2
|
0.0
|
1.0
|
CA
|
B:MET447
|
4.2
|
86.8
|
1.0
|
O
|
A:LEU66
|
4.2
|
41.6
|
1.0
|
CB
|
B:MET447
|
4.3
|
57.0
|
1.0
|
OG1
|
B:THR528
|
4.3
|
88.7
|
1.0
|
N
|
B:ASP506
|
4.3
|
0.0
|
1.0
|
CG1
|
B:VAL444
|
4.4
|
56.0
|
1.0
|
C
|
A:ASP100
|
4.4
|
42.9
|
1.0
|
CD2
|
B:TYR507
|
4.5
|
0.0
|
1.0
|
OD1
|
A:ASN104
|
4.5
|
79.0
|
1.0
|
N
|
A:ARG68
|
4.5
|
51.6
|
1.0
|
C
|
A:ILE99
|
4.5
|
22.6
|
1.0
|
OE2
|
A:GLU69
|
4.6
|
15.8
|
1.0
|
O
|
A:GLN101
|
4.6
|
43.4
|
1.0
|
C
|
B:MET447
|
4.6
|
86.8
|
1.0
|
C
|
A:VAL9
|
4.6
|
14.4
|
1.0
|
O
|
A:ASP100
|
4.6
|
42.9
|
1.0
|
CA
|
B:ALA527
|
4.7
|
90.4
|
1.0
|
C
|
A:ASN12
|
4.7
|
34.7
|
1.0
|
CA
|
B:LEU502
|
4.7
|
0.0
|
1.0
|
C
|
A:ASP67
|
4.7
|
43.9
|
1.0
|
CG
|
A:ASN104
|
4.8
|
79.0
|
1.0
|
CD2
|
B:LEU502
|
4.8
|
100.0
|
1.0
|
O
|
A:VAL9
|
4.8
|
14.4
|
1.0
|
C
|
A:GLN101
|
4.8
|
43.4
|
1.0
|
CD
|
B:LYS504
|
4.9
|
100.0
|
1.0
|
CG
|
A:ARG68
|
4.9
|
39.4
|
1.0
|
CB
|
A:ILE99
|
4.9
|
36.3
|
1.0
|
CB
|
B:VAL444
|
5.0
|
56.0
|
1.0
|
CZ
|
B:TYR507
|
5.0
|
0.0
|
1.0
|
N
|
A:GLU69
|
5.0
|
33.9
|
1.0
|
CD1
|
A:ILE99
|
5.0
|
36.3
|
1.0
|
CG
|
B:MET447
|
5.0
|
57.0
|
1.0
|
|
Calcium binding site 4 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 4 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca908
b:10.5
occ:1.00
|
C
|
B:LEU298
|
0.3
|
69.5
|
1.0
|
CE2
|
B:PHE290
|
0.3
|
99.0
|
1.0
|
CA
|
A:ASP248
|
0.4
|
22.1
|
1.0
|
CA
|
B:ALA356
|
0.4
|
52.5
|
1.0
|
CD2
|
B:TYR296
|
0.4
|
99.4
|
1.0
|
CZ2
|
A:TRP255
|
0.4
|
53.1
|
1.0
|
N
|
B:GLN357
|
0.5
|
67.7
|
1.0
|
NE1
|
A:TRP255
|
0.6
|
53.1
|
1.0
|
N
|
B:GLU349
|
0.6
|
68.4
|
1.0
|
CB
|
B:PHE290
|
0.6
|
99.0
|
1.0
|
CD1
|
B:LEU354
|
0.6
|
26.1
|
1.0
|
CE2
|
A:TRP255
|
0.6
|
53.1
|
1.0
|
CB
|
B:THR316
|
0.7
|
60.3
|
1.0
|
CG
|
B:PHE290
|
0.7
|
99.0
|
1.0
|
CZ
|
B:TYR296
|
0.7
|
99.4
|
1.0
|
CA
|
B:LEU298
|
0.7
|
69.5
|
1.0
|
CD
|
A:GLU119
|
0.7
|
8.7
|
1.0
|
CD1
|
A:TRP255
|
0.8
|
53.1
|
1.0
|
CB
|
B:PRO313
|
0.8
|
49.6
|
1.0
|
CD2
|
B:PHE290
|
0.8
|
99.0
|
1.0
|
OG1
|
B:THR316
|
0.8
|
60.3
|
1.0
|
N
|
B:VAL388
|
0.9
|
60.0
|
1.0
|
O
|
A:GLU119
|
0.9
|
44.1
|
1.0
|
O
|
B:SER346
|
1.0
|
73.7
|
1.0
|
C
|
B:ALA356
|
1.0
|
52.5
|
1.0
|
C
|
A:ASP248
|
1.0
|
22.1
|
1.0
|
C
|
A:GLU276
|
1.0
|
78.0
|
1.0
|
OE2
|
A:GLU119
|
1.0
|
8.7
|
1.0
|
C
|
B:GLN357
|
1.0
|
67.7
|
1.0
|
CE1
|
B:TYR296
|
1.0
|
99.4
|
1.0
|
CA
|
B:GLN299
|
1.0
|
46.5
|
1.0
|
CG
|
B:TYR296
|
1.1
|
99.4
|
1.0
|
N
|
B:ALA356
|
1.1
|
52.5
|
1.0
|
CZ
|
B:PHE290
|
1.1
|
99.0
|
1.0
|
O
|
A:GLU276
|
1.1
|
78.0
|
1.0
|
O
|
B:LEU298
|
1.1
|
69.5
|
1.0
|
C
|
B:VAL388
|
1.2
|
60.0
|
1.0
|
CE2
|
B:TYR296
|
1.2
|
99.4
|
1.0
|
CD2
|
B:LEU298
|
1.2
|
25.3
|
1.0
|
N
|
B:LEU298
|
1.2
|
69.5
|
1.0
|
N
|
B:GLN299
|
1.2
|
46.5
|
1.0
|
CB
|
B:GLN299
|
1.2
|
0.0
|
1.0
|
CA
|
B:THR389
|
1.2
|
0.0
|
1.0
|
O
|
A:ASP248
|
1.2
|
22.1
|
1.0
|
CA
|
B:GLN357
|
1.2
|
67.7
|
1.0
|
CG
|
A:GLU119
|
1.2
|
8.7
|
1.0
|
O
|
B:GLN357
|
1.2
|
67.7
|
1.0
|
O
|
B:VAL388
|
1.3
|
60.0
|
1.0
|
CG2
|
B:THR316
|
1.4
|
60.3
|
1.0
|
N
|
A:SER277
|
1.4
|
84.8
|
1.0
|
OE1
|
A:GLU119
|
1.4
|
8.7
|
1.0
|
CG
|
B:PRO313
|
1.4
|
49.6
|
1.0
|
CB
|
A:PRO123
|
1.4
|
59.7
|
1.0
|
CB
|
B:LEU298
|
1.4
|
25.3
|
1.0
|
OH
|
B:TYR296
|
1.4
|
99.4
|
1.0
|
CB
|
A:ASP248
|
1.4
|
28.0
|
1.0
|
CH2
|
A:TRP255
|
1.4
|
53.1
|
1.0
|
OD1
|
A:ASP216
|
1.5
|
10.1
|
1.0
|
CB
|
B:ALA356
|
1.5
|
52.5
|
1.0
|
C
|
B:SER346
|
1.5
|
73.7
|
1.0
|
O
|
B:GLU349
|
1.5
|
68.4
|
1.0
|
C
|
B:GLY348
|
1.6
|
77.9
|
1.0
|
C
|
B:VAL355
|
1.6
|
83.7
|
1.0
|
CA
|
B:VAL388
|
1.6
|
60.0
|
1.0
|
N
|
A:ASP248
|
1.6
|
22.1
|
1.0
|
CA
|
A:SER277
|
1.7
|
84.8
|
1.0
|
O
|
B:THR314
|
1.7
|
71.9
|
1.0
|
N
|
B:THR389
|
1.7
|
0.0
|
1.0
|
CD1
|
B:TYR296
|
1.7
|
99.4
|
1.0
|
CG
|
B:LEU354
|
1.7
|
26.1
|
1.0
|
CD1
|
B:PHE290
|
1.7
|
99.0
|
1.0
|
C
|
A:GLU119
|
1.7
|
44.1
|
1.0
|
CA
|
B:THR316
|
1.7
|
79.8
|
1.0
|
CA
|
B:GLU349
|
1.7
|
68.4
|
1.0
|
N
|
B:THR316
|
1.7
|
79.8
|
1.0
|
CG
|
B:LEU298
|
1.7
|
25.3
|
1.0
|
CA
|
B:PRO359
|
1.8
|
92.7
|
1.0
|
CG
|
B:GLN299
|
1.8
|
0.0
|
1.0
|
OD2
|
A:ASP248
|
1.8
|
28.0
|
1.0
|
O5
|
B:NAG805
|
1.8
|
89.5
|
1.0
|
CB
|
A:GLU276
|
1.9
|
78.3
|
1.0
|
CB
|
B:TYR296
|
1.9
|
99.4
|
1.0
|
CD2
|
A:TRP255
|
1.9
|
53.1
|
1.0
|
C1
|
B:NAG805
|
1.9
|
89.5
|
1.0
|
CB
|
A:GLU119
|
1.9
|
8.7
|
1.0
|
CG
|
A:TRP255
|
1.9
|
53.1
|
1.0
|
C
|
B:GLU349
|
2.0
|
68.4
|
1.0
|
OE1
|
A:GLU182
|
2.0
|
17.1
|
1.0
|
CB
|
B:THR389
|
2.0
|
85.1
|
1.0
|
N
|
B:GLY348
|
2.0
|
77.9
|
1.0
|
O
|
A:GLY176
|
2.0
|
25.3
|
1.0
|
CB
|
B:PRO359
|
2.0
|
92.7
|
1.0
|
O
|
B:ASP289
|
2.0
|
0.0
|
1.0
|
C
|
B:ILE387
|
2.0
|
60.1
|
1.0
|
N
|
B:ASP358
|
2.0
|
99.7
|
1.0
|
CB
|
B:GLN357
|
2.0
|
96.0
|
1.0
|
CA
|
A:GLU276
|
2.1
|
78.0
|
1.0
|
CE1
|
B:PHE290
|
2.1
|
99.0
|
1.0
|
O
|
B:ILE352
|
2.1
|
76.5
|
1.0
|
CA
|
B:PHE290
|
2.1
|
52.9
|
1.0
|
CD
|
B:PRO313
|
2.1
|
49.6
|
1.0
|
N
|
B:PRO359
|
2.1
|
92.7
|
1.0
|
C
|
B:VAL297
|
2.1
|
58.8
|
1.0
|
CB
|
B:SER346
|
2.2
|
87.9
|
1.0
|
N
|
A:MET249
|
2.2
|
41.8
|
1.0
|
O
|
B:PHE331
|
2.2
|
76.3
|
1.0
|
O
|
B:ALA356
|
2.2
|
52.5
|
1.0
|
O
|
B:VAL355
|
2.2
|
83.7
|
1.0
|
CG
|
A:ASP248
|
2.2
|
28.0
|
1.0
|
OD2
|
A:ASP216
|
2.2
|
10.1
|
1.0
|
CA
|
B:PRO313
|
2.2
|
49.6
|
1.0
|
C
|
B:LEU354
|
2.2
|
62.9
|
1.0
|
CA
|
B:SER315
|
2.2
|
47.2
|
1.0
|
N
|
B:GLU291
|
2.2
|
99.8
|
1.0
|
CA
|
B:SER346
|
2.2
|
73.7
|
1.0
|
OG
|
B:SER315
|
2.2
|
41.5
|
1.0
|
O
|
A:ILE175
|
2.2
|
22.2
|
1.0
|
N
|
B:GLY390
|
2.2
|
68.6
|
1.0
|
CA
|
B:GLY348
|
2.2
|
77.9
|
1.0
|
CE2
|
B:PHE331
|
2.3
|
96.7
|
1.0
|
N
|
B:ARG347
|
2.3
|
56.1
|
1.0
|
CA
|
B:VAL355
|
2.3
|
83.7
|
1.0
|
CB
|
B:LEU354
|
2.3
|
26.1
|
1.0
|
C8
|
B:NAG806
|
2.3
|
64.2
|
0.8
|
O
|
A:ALA214
|
2.3
|
30.5
|
1.0
|
N
|
B:LEU292
|
2.4
|
96.5
|
1.0
|
O
|
B:LEU354
|
2.4
|
62.9
|
1.0
|
O
|
B:GLY386
|
2.4
|
57.8
|
1.0
|
CG
|
A:ASP216
|
2.4
|
10.1
|
1.0
|
N
|
B:VAL355
|
2.4
|
83.7
|
1.0
|
C
|
B:THR389
|
2.4
|
0.0
|
1.0
|
CA
|
B:TYR296
|
2.4
|
86.8
|
1.0
|
CG
|
A:PRO123
|
2.4
|
59.7
|
1.0
|
CG2
|
A:THR177
|
2.4
|
34.9
|
1.0
|
C
|
B:THR314
|
2.5
|
71.9
|
1.0
|
OE2
|
B:GLU291
|
2.5
|
52.9
|
1.0
|
C
|
B:ARG347
|
2.5
|
56.1
|
1.0
|
C
|
A:LEU247
|
2.5
|
48.5
|
1.0
|
OD1
|
A:ASP213
|
2.5
|
47.1
|
1.0
|
CA
|
A:GLU119
|
2.5
|
44.1
|
1.0
|
CB
|
B:GLU349
|
2.5
|
99.7
|
1.0
|
CB
|
B:VAL388
|
2.5
|
72.7
|
1.0
|
O
|
A:LEU179
|
2.5
|
22.6
|
1.0
|
CA
|
B:ILE387
|
2.5
|
60.1
|
1.0
|
C
|
B:GLN299
|
2.5
|
46.5
|
1.0
|
N
|
A:GLY120
|
2.6
|
54.5
|
1.0
|
C
|
B:ASP358
|
2.6
|
99.7
|
1.0
|
O
|
B:GLY348
|
2.6
|
77.9
|
1.0
|
CD
|
B:PRO359
|
2.6
|
92.7
|
1.0
|
CA
|
A:PRO123
|
2.6
|
59.7
|
1.0
|
CA
|
B:ASP358
|
2.6
|
99.7
|
1.0
|
CA
|
B:LEU354
|
2.6
|
62.9
|
1.0
|
O
|
B:ALA317
|
2.6
|
65.8
|
1.0
|
CD
|
A:GLU182
|
2.6
|
17.1
|
1.0
|
C
|
B:THR316
|
2.6
|
79.8
|
1.0
|
CG2
|
B:THR389
|
2.6
|
85.1
|
1.0
|
N
|
B:LEU354
|
2.6
|
62.9
|
1.0
|
CG2
|
B:VAL388
|
2.7
|
72.7
|
1.0
|
CZ3
|
A:TRP255
|
2.7
|
53.1
|
1.0
|
CB
|
B:ARG293
|
2.7
|
0.0
|
1.0
|
C
|
B:SER315
|
2.7
|
47.2
|
1.0
|
C
|
B:PRO313
|
2.7
|
49.6
|
1.0
|
CD
|
A:PRO123
|
2.7
|
59.7
|
1.0
|
CB
|
A:SER277
|
2.7
|
97.7
|
1.0
|
O
|
A:VAL121
|
2.7
|
44.7
|
1.0
|
CG
|
A:GLU276
|
2.7
|
78.3
|
1.0
|
O
|
B:VAL297
|
2.7
|
58.8
|
1.0
|
C
|
B:TYR296
|
2.7
|
86.8
|
1.0
|
OE1
|
A:GLU276
|
2.7
|
78.3
|
1.0
|
CZ
|
B:PHE331
|
2.8
|
96.7
|
1.0
|
C
|
B:ASP289
|
2.8
|
0.0
|
1.0
|
C
|
B:PHE290
|
2.8
|
52.9
|
1.0
|
OD2
|
A:ASP213
|
2.8
|
47.1
|
1.0
|
O
|
A:LEU247
|
2.8
|
48.5
|
1.0
|
N
|
B:ARG293
|
2.8
|
59.5
|
1.0
|
N
|
B:VAL297
|
2.8
|
58.8
|
1.0
|
C
|
A:GLY176
|
2.8
|
25.3
|
1.0
|
C
|
B:GLY386
|
2.8
|
57.8
|
1.0
|
N
|
B:PHE290
|
2.8
|
52.9
|
1.0
|
N
|
B:SER315
|
2.9
|
47.2
|
1.0
|
N
|
B:PRO313
|
2.9
|
49.6
|
1.0
|
CB
|
B:SER315
|
2.9
|
41.5
|
1.0
|
CD2
|
B:LEU354
|
2.9
|
26.1
|
1.0
|
CA
|
B:ARG347
|
2.9
|
56.1
|
1.0
|
CA
|
A:GLY120
|
2.9
|
54.5
|
1.0
|
C
|
A:SER277
|
2.9
|
84.8
|
1.0
|
N
|
B:ALA317
|
2.9
|
65.8
|
1.0
|
N
|
A:PRO123
|
2.9
|
59.7
|
1.0
|
CB
|
B:GLU291
|
2.9
|
52.9
|
1.0
|
N
|
B:ILE300
|
2.9
|
55.1
|
1.0
|
CD2
|
B:PHE331
|
2.9
|
96.7
|
1.0
|
CB
|
B:LEU292
|
2.9
|
73.5
|
1.0
|
CA
|
B:CA911
|
2.9
|
37.4
|
1.0
|
CE3
|
A:TRP255
|
2.9
|
53.1
|
1.0
|
O
|
B:GLY390
|
3.0
|
68.6
|
1.0
|
OE2
|
A:GLU182
|
3.0
|
17.1
|
1.0
|
N
|
B:LYS350
|
3.0
|
96.1
|
1.0
|
CG
|
A:ASP213
|
3.0
|
47.1
|
1.0
|
O
|
B:ARG347
|
3.0
|
56.1
|
1.0
|
O
|
B:ARG293
|
3.0
|
59.5
|
1.0
|
O
|
B:ILE387
|
3.0
|
60.1
|
1.0
|
CA
|
A:THR177
|
3.0
|
44.7
|
1.0
|
N
|
A:ALA214
|
3.0
|
30.5
|
1.0
|
CD1
|
B:LEU298
|
3.0
|
25.3
|
1.0
|
C
|
B:PRO359
|
3.0
|
92.7
|
1.0
|
CB
|
A:TRP255
|
3.1
|
53.1
|
1.0
|
OD2
|
B:ASP289
|
3.1
|
99.7
|
1.0
|
O
|
B:PRO313
|
3.1
|
49.6
|
1.0
|
C5
|
B:NAG805
|
3.1
|
89.5
|
1.0
|
O
|
B:GLN295
|
3.1
|
91.9
|
1.0
|
CG
|
B:GLU349
|
3.1
|
99.7
|
1.0
|
CD
|
B:GLN299
|
3.1
|
0.0
|
1.0
|
OG
|
B:SER346
|
3.1
|
87.9
|
1.0
|
N
|
B:ILE387
|
3.1
|
60.1
|
1.0
|
CA
|
B:VAL297
|
3.1
|
58.8
|
1.0
|
CG
|
B:PRO359
|
3.2
|
92.7
|
1.0
|
C
|
B:GLU291
|
3.2
|
99.8
|
1.0
|
N
|
B:THR314
|
3.2
|
71.9
|
1.0
|
CA
|
B:GLU291
|
3.2
|
99.8
|
1.0
|
O
|
B:THR316
|
3.2
|
79.8
|
1.0
|
N
|
A:ASN278
|
3.2
|
54.3
|
1.0
|
CB
|
A:ALA214
|
3.2
|
30.5
|
1.0
|
CA
|
B:LEU292
|
3.2
|
96.5
|
1.0
|
CG
|
B:LEU292
|
3.2
|
73.5
|
1.0
|
C
|
B:ALA317
|
3.2
|
65.8
|
1.0
|
C
|
B:ILE352
|
3.2
|
76.5
|
1.0
|
CB
|
A:THR177
|
3.2
|
34.9
|
1.0
|
O
|
B:ASP358
|
3.2
|
99.7
|
1.0
|
OG
|
A:SER277
|
3.2
|
97.7
|
1.0
|
OG1
|
B:THR389
|
3.3
|
85.1
|
1.0
|
N
|
A:GLU276
|
3.3
|
78.0
|
1.0
|
CA
|
A:CA909
|
3.3
|
12.9
|
1.0
|
CA
|
B:ARG293
|
3.3
|
59.5
|
1.0
|
C
|
A:ALA214
|
3.3
|
30.5
|
1.0
|
C
|
B:PHE331
|
3.3
|
76.3
|
1.0
|
O
|
B:TYR296
|
3.3
|
86.8
|
1.0
|
CD2
|
A:LEU174
|
3.3
|
39.9
|
1.0
|
NE2
|
B:GLN299
|
3.3
|
0.0
|
1.0
|
CA
|
A:MET249
|
3.3
|
41.8
|
1.0
|
CB
|
A:LEU179
|
3.3
|
33.9
|
1.0
|
CA
|
B:LYS350
|
3.3
|
96.1
|
1.0
|
N
|
B:ILE351
|
3.3
|
42.0
|
1.0
|
C
|
A:ILE175
|
3.3
|
22.2
|
1.0
|
CG
|
B:ARG293
|
3.3
|
0.0
|
1.0
|
CD
|
B:GLU291
|
3.4
|
52.9
|
1.0
|
N
|
A:PRO250
|
3.4
|
34.0
|
1.0
|
CD
|
A:GLU276
|
3.4
|
78.3
|
1.0
|
CG
|
B:GLN357
|
3.4
|
96.0
|
1.0
|
N2
|
B:NAG806
|
3.4
|
64.2
|
0.8
|
C2
|
B:NAG805
|
3.4
|
89.5
|
1.0
|
CE2
|
B:TYR369
|
3.4
|
55.3
|
1.0
|
O
|
B:THR389
|
3.4
|
0.0
|
1.0
|
OD1
|
A:ASP248
|
3.4
|
28.0
|
1.0
|
N
|
A:THR177
|
3.4
|
44.7
|
1.0
|
C
|
B:ARG293
|
3.4
|
59.5
|
1.0
|
C
|
A:LEU179
|
3.5
|
22.6
|
1.0
|
N
|
B:PHE331
|
3.5
|
76.3
|
1.0
|
CA
|
A:ALA214
|
3.5
|
30.5
|
1.0
|
O
|
B:GLN299
|
3.5
|
46.5
|
1.0
|
CG2
|
B:ILE387
|
3.5
|
73.5
|
1.0
|
CA
|
B:GLY390
|
3.5
|
68.6
|
1.0
|
O
|
B:PRO359
|
3.5
|
92.7
|
1.0
|
C7
|
B:NAG806
|
3.5
|
64.2
|
0.8
|
CG
|
B:ASP289
|
3.5
|
99.7
|
1.0
|
CA
|
A:PRO250
|
3.5
|
34.0
|
1.0
|
CE1
|
B:PHE331
|
3.5
|
96.7
|
1.0
|
C
|
A:MET249
|
3.6
|
41.8
|
1.0
|
N
|
B:TYR296
|
3.6
|
86.8
|
1.0
|
O6
|
B:NAG805
|
3.6
|
89.5
|
1.0
|
CA
|
B:PHE332
|
3.6
|
0.0
|
1.0
|
CG
|
A:GLU182
|
3.6
|
17.1
|
1.0
|
C
|
B:LEU292
|
3.6
|
96.5
|
1.0
|
CG
|
B:PHE331
|
3.6
|
96.7
|
1.0
|
CA
|
B:THR318
|
3.6
|
63.9
|
1.0
|
C
|
A:GLY120
|
3.6
|
54.5
|
1.0
|
N
|
B:SER346
|
3.6
|
73.7
|
1.0
|
O
|
B:VAL319
|
3.6
|
48.1
|
1.0
|
CA
|
B:GLY386
|
3.6
|
57.8
|
1.0
|
N
|
A:LEU179
|
3.6
|
22.6
|
1.0
|
CA
|
B:THR314
|
3.6
|
71.9
|
1.0
|
C
|
B:GLY390
|
3.7
|
68.6
|
1.0
|
O
|
A:ASP246
|
3.7
|
85.4
|
1.0
|
CD
|
A:PRO250
|
3.7
|
34.0
|
1.0
|
CB
|
B:VAL355
|
3.7
|
82.9
|
1.0
|
CG
|
B:GLU291
|
3.7
|
52.9
|
1.0
|
CA
|
A:LEU247
|
3.7
|
48.5
|
1.0
|
CB
|
B:ILE387
|
3.7
|
73.5
|
1.0
|
NH2
|
A:ARG181
|
3.7
|
47.9
|
1.0
|
ND2
|
A:ASN278
|
3.7
|
62.2
|
1.0
|
CD1
|
B:PHE331
|
3.7
|
96.7
|
1.0
|
C
|
B:GLN295
|
3.7
|
91.9
|
1.0
|
CA
|
A:GLY176
|
3.7
|
25.3
|
1.0
|
C
|
B:SER353
|
3.7
|
79.6
|
1.0
|
N
|
B:THR318
|
3.7
|
63.9
|
1.0
|
CA
|
B:SER353
|
3.8
|
79.6
|
1.0
|
CA
|
A:LEU179
|
3.8
|
22.6
|
1.0
|
CB
|
A:ASP216
|
3.8
|
10.1
|
1.0
|
C
|
B:LYS350
|
3.8
|
96.1
|
1.0
|
OD1
|
B:ASP289
|
3.8
|
99.7
|
1.0
|
CG1
|
B:VAL388
|
3.8
|
72.7
|
1.0
|
OD1
|
A:ASP246
|
3.8
|
13.3
|
1.0
|
N
|
A:GLU119
|
3.8
|
44.1
|
1.0
|
C
|
A:PRO123
|
3.8
|
59.7
|
1.0
|
CG
|
A:PRO250
|
3.8
|
34.0
|
1.0
|
O
|
B:SER315
|
3.8
|
47.2
|
1.0
|
N
|
A:GLY178
|
3.8
|
67.1
|
1.0
|
N
|
A:VAL121
|
3.9
|
44.7
|
1.0
|
C6
|
B:NAG805
|
3.9
|
89.5
|
1.0
|
NE
|
A:ARG181
|
3.9
|
47.9
|
1.0
|
CA
|
B:ALA317
|
3.9
|
65.8
|
1.0
|
CG
|
A:LEU179
|
3.9
|
33.9
|
1.0
|
CD1
|
B:LEU292
|
3.9
|
73.5
|
1.0
|
C
|
A:GLN122
|
3.9
|
41.9
|
1.0
|
O
|
B:PHE290
|
3.9
|
52.9
|
1.0
|
N
|
B:SER353
|
3.9
|
79.6
|
1.0
|
O
|
A:SER277
|
3.9
|
84.8
|
1.0
|
N
|
A:GLY176
|
3.9
|
25.3
|
1.0
|
N
|
B:ASP360
|
3.9
|
65.5
|
1.0
|
C
|
A:VAL121
|
3.9
|
44.7
|
1.0
|
OD1
|
A:ASP180
|
4.0
|
24.0
|
1.0
|
N
|
B:ILE352
|
4.0
|
76.5
|
1.0
|
ND2
|
A:ASN217
|
4.0
|
53.4
|
1.0
|
O
|
B:ILE300
|
4.0
|
55.1
|
1.0
|
CA
|
B:ASP289
|
4.0
|
0.0
|
1.0
|
N
|
A:LEU247
|
4.0
|
48.5
|
1.0
|
N
|
B:PHE332
|
4.0
|
0.0
|
1.0
|
C
|
B:LEU312
|
4.0
|
45.9
|
1.0
|
CG2
|
B:THR318
|
4.0
|
70.0
|
1.0
|
CA
|
A:TRP255
|
4.0
|
50.6
|
1.0
|
CA
|
B:PHE331
|
4.0
|
76.3
|
1.0
|
N
|
B:VAL319
|
4.0
|
48.1
|
1.0
|
N
|
A:ASP216
|
4.0
|
48.2
|
1.0
|
CB
|
B:ARG347
|
4.1
|
99.5
|
1.0
|
C
|
A:ASP246
|
4.1
|
85.4
|
1.0
|
OE1
|
B:GLN299
|
4.1
|
0.0
|
1.0
|
CD2
|
B:TYR369
|
4.1
|
55.3
|
1.0
|
CB
|
B:ASP358
|
4.1
|
96.2
|
1.0
|
O
|
A:ALA254
|
4.1
|
24.4
|
1.0
|
N
|
A:ARG181
|
4.1
|
27.8
|
1.0
|
CD1
|
A:LEU179
|
4.1
|
33.9
|
1.0
|
CG
|
A:LEU174
|
4.1
|
39.9
|
1.0
|
N2
|
B:NAG805
|
4.1
|
89.5
|
1.0
|
CB
|
B:ASP289
|
4.1
|
99.7
|
1.0
|
C
|
A:ASP213
|
4.1
|
43.1
|
1.0
|
C
|
A:THR177
|
4.2
|
44.7
|
1.0
|
CD1
|
B:PHE332
|
4.2
|
99.8
|
1.0
|
C
|
B:PHE332
|
4.2
|
0.0
|
1.0
|
O
|
A:GLY120
|
4.2
|
54.5
|
1.0
|
CB
|
A:PRO250
|
4.2
|
34.0
|
1.0
|
CA
|
A:ASP180
|
4.2
|
28.1
|
1.0
|
NZ
|
B:LYS224
|
4.2
|
100.0
|
1.0
|
C4
|
B:NAG805
|
4.2
|
89.5
|
1.0
|
O
|
A:MET249
|
4.2
|
41.8
|
1.0
|
CA
|
B:ILE352
|
4.2
|
76.5
|
1.0
|
O
|
B:GLU291
|
4.2
|
99.8
|
1.0
|
OH
|
B:TYR369
|
4.2
|
55.3
|
1.0
|
O
|
B:THR380
|
4.2
|
80.3
|
1.0
|
C3
|
B:NAG805
|
4.3
|
89.5
|
1.0
|
N
|
B:VAL333
|
4.3
|
82.6
|
1.0
|
CA
|
B:ILE300
|
4.3
|
55.1
|
1.0
|
NH1
|
A:ARG241
|
4.3
|
47.5
|
1.0
|
CB
|
A:ARG181
|
4.3
|
47.9
|
1.0
|
N
|
B:ASP289
|
4.3
|
0.0
|
1.0
|
CZ
|
B:TYR369
|
4.3
|
55.3
|
1.0
|
CG1
|
B:ILE352
|
4.3
|
72.5
|
1.0
|
C
|
B:ILE300
|
4.3
|
55.1
|
1.0
|
O
|
A:TRP255
|
4.3
|
50.6
|
1.0
|
CB
|
B:THR318
|
4.3
|
70.0
|
1.0
|
O
|
A:PRO250
|
4.3
|
34.0
|
1.0
|
CA
|
A:ILE175
|
4.3
|
22.2
|
1.0
|
C
|
A:PRO275
|
4.3
|
57.9
|
1.0
|
CZ
|
A:ARG181
|
4.3
|
47.9
|
1.0
|
CG2
|
B:THR301
|
4.3
|
71.7
|
1.0
|
CG1
|
B:ILE351
|
4.3
|
27.4
|
1.0
|
CA
|
A:GLN122
|
4.4
|
41.9
|
1.0
|
CG2
|
B:VAL323
|
4.4
|
37.3
|
1.0
|
CB
|
B:ILE351
|
4.4
|
27.4
|
1.0
|
CA
|
B:PRO330
|
4.4
|
43.9
|
1.0
|
CA
|
B:ILE351
|
4.4
|
42.0
|
1.0
|
CB
|
A:ASP213
|
4.4
|
47.1
|
1.0
|
C
|
B:PRO330
|
4.4
|
43.9
|
1.0
|
N
|
A:ASP180
|
4.4
|
28.1
|
1.0
|
CD2
|
B:LEU292
|
4.4
|
73.5
|
1.0
|
CA
|
A:ASP213
|
4.4
|
43.1
|
1.0
|
CD
|
B:GLU349
|
4.4
|
99.7
|
1.0
|
OG1
|
B:THR318
|
4.4
|
70.0
|
1.0
|
O
|
A:PRO123
|
4.4
|
59.7
|
1.0
|
OE1
|
B:GLU291
|
4.4
|
52.9
|
1.0
|
CD
|
B:GLN357
|
4.5
|
96.0
|
1.0
|
CB
|
A:ASP246
|
4.5
|
13.3
|
1.0
|
CB
|
B:PHE332
|
4.5
|
99.8
|
1.0
|
N
|
A:ASN215
|
4.5
|
34.3
|
1.0
|
CD1
|
B:ILE300
|
4.5
|
30.9
|
1.0
|
C
|
A:PRO250
|
4.5
|
34.0
|
1.0
|
N
|
A:GLY124
|
4.5
|
65.0
|
1.0
|
N
|
B:LYS294
|
4.5
|
0.0
|
1.0
|
CG
|
A:ASN278
|
4.5
|
62.2
|
1.0
|
CB
|
B:PHE331
|
4.5
|
96.7
|
1.0
|
CE2
|
B:PHE269
|
4.5
|
54.5
|
1.0
|
OE1
|
B:GLU349
|
4.5
|
99.7
|
1.0
|
C
|
B:THR318
|
4.5
|
63.9
|
1.0
|
CG2
|
B:VAL355
|
4.5
|
82.9
|
1.0
|
CB
|
B:VAL297
|
4.5
|
77.0
|
1.0
|
OG1
|
A:THR177
|
4.5
|
34.9
|
1.0
|
CB
|
B:THR314
|
4.6
|
29.6
|
1.0
|
O7
|
B:NAG806
|
4.6
|
64.2
|
0.8
|
ND2
|
B:ASN391
|
4.6
|
0.0
|
1.0
|
CB
|
A:MET249
|
4.6
|
52.2
|
1.0
|
O
|
A:ARG118
|
4.6
|
36.5
|
1.0
|
CA
|
A:ASP216
|
4.6
|
48.2
|
1.0
|
CB
|
B:PRO330
|
4.6
|
43.9
|
1.0
|
C
|
B:LEU345
|
4.6
|
52.2
|
1.0
|
CG
|
A:ASP246
|
4.6
|
13.3
|
1.0
|
CA
|
B:LEU312
|
4.6
|
45.9
|
1.0
|
CA
|
A:ASN278
|
4.6
|
54.3
|
1.0
|
CG1
|
B:VAL355
|
4.6
|
82.9
|
1.0
|
O
|
A:PRO275
|
4.6
|
57.9
|
1.0
|
OE1
|
B:GLN357
|
4.6
|
96.0
|
1.0
|
C2
|
B:NAG806
|
4.6
|
64.2
|
0.8
|
CB
|
B:LYS350
|
4.6
|
100.0
|
1.0
|
OE2
|
A:GLU276
|
4.6
|
78.3
|
1.0
|
CA
|
A:VAL121
|
4.7
|
44.7
|
1.0
|
CG1
|
B:VAL297
|
4.7
|
77.0
|
1.0
|
CB
|
B:ILE352
|
4.7
|
72.5
|
1.0
|
C
|
A:GLY178
|
4.7
|
67.1
|
1.0
|
O
|
A:GLN122
|
4.7
|
41.9
|
1.0
|
C
|
B:VAL319
|
4.7
|
48.1
|
1.0
|
OD1
|
A:ASP274
|
4.7
|
0.0
|
1.0
|
O
|
B:LEU312
|
4.7
|
45.9
|
1.0
|
CD
|
A:ARG181
|
4.7
|
47.9
|
1.0
|
N
|
B:ASN391
|
4.7
|
85.3
|
1.0
|
NE2
|
A:GLN279
|
4.7
|
47.4
|
1.0
|
O
|
B:LEU292
|
4.8
|
96.5
|
1.0
|
C
|
A:ARG118
|
4.8
|
36.5
|
1.0
|
CD
|
B:ARG293
|
4.8
|
0.0
|
1.0
|
C
|
A:TRP255
|
4.8
|
50.6
|
1.0
|
N
|
A:GLN122
|
4.8
|
41.9
|
1.0
|
CD1
|
A:LEU174
|
4.8
|
39.9
|
1.0
|
CE
|
B:LYS224
|
4.8
|
100.0
|
1.0
|
OE2
|
B:GLU328
|
4.8
|
0.0
|
1.0
|
O
|
B:LEU345
|
4.8
|
52.2
|
1.0
|
C
|
A:ALA254
|
4.8
|
24.4
|
1.0
|
C3
|
B:NAG806
|
4.8
|
64.2
|
0.8
|
C
|
A:ASP180
|
4.8
|
28.1
|
1.0
|
CD2
|
B:LEU345
|
4.8
|
0.0
|
1.0
|
CZ
|
B:PHE269
|
4.8
|
54.5
|
1.0
|
CG
|
B:ARG262
|
4.8
|
61.2
|
1.0
|
C
|
B:ILE351
|
4.8
|
42.0
|
1.0
|
CG1
|
B:ILE387
|
4.8
|
73.5
|
1.0
|
OE2
|
B:GLU232
|
4.8
|
49.7
|
1.0
|
O
|
B:SER353
|
4.8
|
79.6
|
1.0
|
CA
|
A:GLY178
|
4.9
|
67.1
|
1.0
|
CG
|
B:PHE332
|
4.9
|
99.8
|
1.0
|
N
|
A:GLU182
|
4.9
|
40.6
|
1.0
|
CA
|
B:VAL319
|
4.9
|
48.1
|
1.0
|
CZ
|
B:ARG293
|
4.9
|
0.0
|
1.0
|
CB
|
A:LEU247
|
4.9
|
11.6
|
1.0
|
O
|
B:LYS350
|
4.9
|
96.1
|
1.0
|
O
|
B:PHE332
|
4.9
|
0.0
|
1.0
|
N
|
A:TRP255
|
4.9
|
50.6
|
1.0
|
CG1
|
A:ILE175
|
4.9
|
20.3
|
1.0
|
O
|
A:LEU174
|
4.9
|
17.0
|
1.0
|
O7
|
B:NAG805
|
4.9
|
89.5
|
1.0
|
CA
|
A:ASN215
|
4.9
|
34.3
|
1.0
|
CA
|
A:ARG181
|
4.9
|
27.8
|
1.0
|
CA
|
A:ASP246
|
4.9
|
85.4
|
1.0
|
N
|
B:THR301
|
4.9
|
27.7
|
1.0
|
NH1
|
B:ARG293
|
4.9
|
0.0
|
1.0
|
CD
|
B:GLU232
|
4.9
|
49.7
|
1.0
|
NE
|
B:ARG293
|
4.9
|
0.0
|
1.0
|
CG
|
B:ASP358
|
4.9
|
96.2
|
1.0
|
CG2
|
B:VAL321
|
4.9
|
44.5
|
1.0
|
O3
|
B:NAG806
|
5.0
|
64.2
|
0.8
|
CG
|
B:LYS350
|
5.0
|
100.0
|
1.0
|
CB
|
A:ASN278
|
5.0
|
62.2
|
1.0
|
O
|
B:ASN385
|
5.0
|
70.8
|
1.0
|
C7
|
B:NAG805
|
5.0
|
89.5
|
1.0
|
O
|
A:ASP274
|
5.0
|
85.4
|
1.0
|
N
|
B:GLY386
|
5.0
|
57.8
|
1.0
|
CG
|
A:ASP180
|
5.0
|
24.0
|
1.0
|
CD2
|
B:LEU312
|
5.0
|
28.0
|
1.0
|
CG2
|
A:VAL121
|
5.0
|
45.8
|
1.0
|
CG2
|
B:VAL333
|
5.0
|
68.3
|
1.0
|
|
Calcium binding site 5 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 5 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca909
b:12.9
occ:1.00
|
OG
|
A:SER277
|
0.1
|
97.7
|
1.0
|
CA
|
B:LYS350
|
0.2
|
96.1
|
1.0
|
CG
|
B:ARG293
|
0.3
|
0.0
|
1.0
|
CD
|
B:GLN299
|
0.4
|
0.0
|
1.0
|
OE2
|
A:GLU182
|
0.4
|
17.1
|
1.0
|
CB
|
A:THR177
|
0.4
|
34.9
|
1.0
|
CA
|
A:LEU247
|
0.5
|
48.5
|
1.0
|
CA
|
B:SER353
|
0.5
|
79.6
|
1.0
|
CG
|
B:GLU349
|
0.6
|
99.7
|
1.0
|
O
|
B:VAL297
|
0.7
|
58.8
|
1.0
|
CA
|
B:LEU292
|
0.8
|
96.5
|
1.0
|
N
|
B:LEU354
|
0.8
|
62.9
|
1.0
|
CG
|
B:GLN357
|
0.8
|
96.0
|
1.0
|
N
|
B:LYS350
|
0.8
|
96.1
|
1.0
|
C5
|
B:NAG805
|
0.9
|
89.5
|
1.0
|
C
|
A:LEU247
|
0.9
|
48.5
|
1.0
|
CB
|
B:LEU292
|
0.9
|
73.5
|
1.0
|
C
|
B:SER353
|
0.9
|
79.6
|
1.0
|
C4
|
B:NAG805
|
1.0
|
89.5
|
1.0
|
NE2
|
B:GLN299
|
1.1
|
0.0
|
1.0
|
CB
|
A:SER277
|
1.1
|
97.7
|
1.0
|
O
|
A:ASP246
|
1.1
|
85.4
|
1.0
|
C
|
B:LEU354
|
1.2
|
62.9
|
1.0
|
CA
|
B:VAL355
|
1.2
|
83.7
|
1.0
|
N
|
B:VAL355
|
1.3
|
83.7
|
1.0
|
CB
|
B:VAL355
|
1.3
|
82.9
|
1.0
|
CB
|
B:GLN357
|
1.3
|
96.0
|
1.0
|
CD
|
B:GLU349
|
1.3
|
99.7
|
1.0
|
CA
|
A:THR177
|
1.3
|
44.7
|
1.0
|
CA
|
B:LEU354
|
1.3
|
62.9
|
1.0
|
CB
|
B:GLU349
|
1.3
|
99.7
|
1.0
|
C
|
B:GLU349
|
1.4
|
68.4
|
1.0
|
CG2
|
A:THR177
|
1.4
|
34.9
|
1.0
|
OG
|
B:SER346
|
1.4
|
87.9
|
1.0
|
C
|
B:LEU292
|
1.4
|
96.5
|
1.0
|
N
|
B:SER353
|
1.4
|
79.6
|
1.0
|
O5
|
B:NAG805
|
1.5
|
89.5
|
1.0
|
CD
|
A:GLU182
|
1.5
|
17.1
|
1.0
|
CG2
|
B:VAL355
|
1.5
|
82.9
|
1.0
|
CB
|
B:ARG293
|
1.5
|
0.0
|
1.0
|
N
|
A:GLY178
|
1.5
|
67.1
|
1.0
|
OG1
|
A:THR177
|
1.5
|
34.9
|
1.0
|
CG
|
B:GLN299
|
1.5
|
0.0
|
1.0
|
CB
|
B:LYS350
|
1.6
|
100.0
|
1.0
|
CB
|
A:LEU247
|
1.6
|
11.6
|
1.0
|
CD2
|
B:LEU292
|
1.6
|
73.5
|
1.0
|
OE1
|
B:GLN299
|
1.7
|
0.0
|
1.0
|
CA
|
B:GLU349
|
1.7
|
68.4
|
1.0
|
CD
|
B:GLN357
|
1.7
|
96.0
|
1.0
|
CD
|
B:ARG293
|
1.7
|
0.0
|
1.0
|
N
|
A:LEU247
|
1.7
|
48.5
|
1.0
|
C
|
B:LYS350
|
1.7
|
96.1
|
1.0
|
NE
|
B:ARG293
|
1.7
|
0.0
|
1.0
|
C
|
A:THR177
|
1.7
|
44.7
|
1.0
|
CG
|
B:LEU292
|
1.8
|
73.5
|
1.0
|
C
|
B:VAL355
|
1.8
|
83.7
|
1.0
|
O
|
B:LEU354
|
1.8
|
62.9
|
1.0
|
ND2
|
A:ASN217
|
1.8
|
53.4
|
1.0
|
O
|
A:LEU247
|
1.8
|
48.5
|
1.0
|
NH2
|
B:ARG293
|
1.9
|
0.0
|
1.0
|
N
|
A:ASP248
|
1.9
|
22.1
|
1.0
|
O
|
B:SER353
|
1.9
|
79.6
|
1.0
|
C3
|
B:NAG805
|
1.9
|
89.5
|
1.0
|
C
|
B:VAL297
|
1.9
|
58.8
|
1.0
|
N
|
B:ARG293
|
1.9
|
59.5
|
1.0
|
CB
|
B:SER346
|
1.9
|
87.9
|
1.0
|
CZ
|
B:ARG293
|
2.0
|
0.0
|
1.0
|
N
|
B:LEU292
|
2.0
|
96.5
|
1.0
|
C6
|
B:NAG805
|
2.0
|
89.5
|
1.0
|
C
|
A:ASP246
|
2.0
|
85.4
|
1.0
|
CG
|
A:GLU182
|
2.0
|
17.1
|
1.0
|
OE1
|
B:GLU349
|
2.0
|
99.7
|
1.0
|
C
|
B:ILE352
|
2.1
|
76.5
|
1.0
|
CB
|
B:SER353
|
2.1
|
59.3
|
1.0
|
N
|
A:THR177
|
2.1
|
44.7
|
1.0
|
O
|
A:LEU179
|
2.1
|
22.6
|
1.0
|
OD1
|
A:ASP180
|
2.2
|
24.0
|
1.0
|
O
|
B:LEU292
|
2.2
|
96.5
|
1.0
|
CA
|
A:GLY178
|
2.2
|
67.1
|
1.0
|
O
|
B:VAL355
|
2.2
|
83.7
|
1.0
|
O4
|
B:NAG805
|
2.3
|
89.5
|
1.0
|
OE2
|
B:GLU349
|
2.3
|
99.7
|
1.0
|
C2
|
B:NAG805
|
2.3
|
89.5
|
1.0
|
N
|
B:ILE351
|
2.3
|
42.0
|
1.0
|
C1
|
B:NAG805
|
2.3
|
89.5
|
1.0
|
NE2
|
B:GLN357
|
2.3
|
96.0
|
1.0
|
O6
|
B:NAG805
|
2.3
|
89.5
|
1.0
|
OE1
|
A:GLU182
|
2.4
|
17.1
|
1.0
|
O
|
B:ILE352
|
2.4
|
76.5
|
1.0
|
NH1
|
B:ARG293
|
2.4
|
0.0
|
1.0
|
OD2
|
A:ASP216
|
2.4
|
10.1
|
1.0
|
CG
|
B:LYS350
|
2.4
|
100.0
|
1.0
|
CG1
|
B:VAL355
|
2.4
|
82.9
|
1.0
|
CA
|
B:ARG293
|
2.4
|
59.5
|
1.0
|
N
|
B:ALA356
|
2.5
|
52.5
|
1.0
|
O
|
B:GLU349
|
2.5
|
68.4
|
1.0
|
CA
|
A:SER277
|
2.5
|
84.8
|
1.0
|
O
|
A:THR177
|
2.5
|
44.7
|
1.0
|
OE1
|
A:GLU119
|
2.5
|
8.7
|
1.0
|
OE1
|
B:GLN357
|
2.6
|
96.0
|
1.0
|
CG
|
A:ASN217
|
2.6
|
53.4
|
1.0
|
CG
|
A:ASP216
|
2.6
|
10.1
|
1.0
|
CB
|
B:GLN299
|
2.6
|
0.0
|
1.0
|
CA
|
B:GLN357
|
2.6
|
67.7
|
1.0
|
N
|
A:LEU179
|
2.7
|
22.6
|
1.0
|
C
|
A:GLY178
|
2.7
|
67.1
|
1.0
|
C
|
B:GLU291
|
2.7
|
99.8
|
1.0
|
O
|
B:LYS350
|
2.7
|
96.1
|
1.0
|
N
|
B:LEU298
|
2.7
|
69.5
|
1.0
|
O
|
B:GLU291
|
2.7
|
99.8
|
1.0
|
OG
|
B:SER353
|
2.7
|
59.3
|
1.0
|
C
|
B:ALA356
|
2.7
|
52.5
|
1.0
|
CG
|
A:ASP180
|
2.8
|
24.0
|
1.0
|
O
|
B:GLN295
|
2.8
|
91.9
|
1.0
|
N
|
B:VAL297
|
2.8
|
58.8
|
1.0
|
CB
|
A:ASP216
|
2.8
|
10.1
|
1.0
|
N
|
B:GLN357
|
2.8
|
67.7
|
1.0
|
CB
|
B:LEU354
|
2.8
|
26.1
|
1.0
|
O
|
B:ALA356
|
2.8
|
52.5
|
1.0
|
OD2
|
A:ASP248
|
2.9
|
28.0
|
1.0
|
C
|
A:GLY176
|
2.9
|
25.3
|
1.0
|
OD1
|
A:ASP216
|
2.9
|
10.1
|
1.0
|
OG1
|
B:THR316
|
2.9
|
60.3
|
1.0
|
NE1
|
A:TRP255
|
2.9
|
53.1
|
1.0
|
CA
|
B:LEU298
|
2.9
|
69.5
|
1.0
|
N
|
B:GLU349
|
2.9
|
68.4
|
1.0
|
OD1
|
A:ASN217
|
3.0
|
53.4
|
1.0
|
CA
|
A:ASP248
|
3.0
|
22.1
|
1.0
|
CA
|
B:VAL297
|
3.0
|
58.8
|
1.0
|
CG1
|
B:VAL297
|
3.0
|
77.0
|
1.0
|
CB
|
A:GLU182
|
3.0
|
17.1
|
1.0
|
CD1
|
B:LEU292
|
3.1
|
73.5
|
1.0
|
O3
|
B:NAG805
|
3.1
|
89.5
|
1.0
|
CG
|
A:LEU247
|
3.1
|
11.6
|
1.0
|
C
|
A:LEU179
|
3.1
|
22.6
|
1.0
|
CA
|
B:ALA356
|
3.1
|
52.5
|
1.0
|
O3
|
B:NAG806
|
3.1
|
64.2
|
0.8
|
CB
|
A:ASP180
|
3.1
|
24.0
|
1.0
|
CB
|
B:VAL297
|
3.1
|
77.0
|
1.0
|
O
|
A:GLY176
|
3.2
|
25.3
|
1.0
|
O
|
B:VAL388
|
3.2
|
60.0
|
1.0
|
N
|
A:ASP246
|
3.3
|
85.4
|
1.0
|
CE2
|
B:TYR296
|
3.3
|
99.4
|
1.0
|
CA
|
A:CA908
|
3.3
|
10.5
|
1.0
|
NE2
|
A:GLN279
|
3.3
|
47.4
|
1.0
|
CA
|
A:ASP246
|
3.3
|
85.4
|
1.0
|
CD2
|
B:TYR296
|
3.3
|
99.4
|
1.0
|
N
|
B:ILE352
|
3.3
|
76.5
|
1.0
|
CA
|
B:ILE352
|
3.3
|
76.5
|
1.0
|
C
|
B:LEU298
|
3.3
|
69.5
|
1.0
|
N
|
B:GLN299
|
3.3
|
46.5
|
1.0
|
CB
|
B:PRO313
|
3.3
|
49.6
|
1.0
|
OD2
|
A:ASP180
|
3.3
|
24.0
|
1.0
|
CE2
|
B:PHE290
|
3.4
|
99.0
|
1.0
|
CD2
|
B:PHE290
|
3.4
|
99.0
|
1.0
|
N
|
A:SER277
|
3.4
|
84.8
|
1.0
|
CA
|
A:ASP180
|
3.4
|
28.1
|
1.0
|
O
|
B:SER346
|
3.4
|
73.7
|
1.0
|
CA
|
B:SER346
|
3.4
|
73.7
|
1.0
|
O
|
A:ASP248
|
3.5
|
22.1
|
1.0
|
OH
|
B:TYR296
|
3.5
|
99.4
|
1.0
|
C
|
A:SER277
|
3.5
|
84.8
|
1.0
|
CZ
|
B:TYR296
|
3.5
|
99.4
|
1.0
|
CB
|
A:ASN217
|
3.5
|
53.4
|
1.0
|
CD1
|
A:TRP255
|
3.5
|
53.1
|
1.0
|
CA
|
B:TYR296
|
3.5
|
86.8
|
1.0
|
O
|
B:GLY386
|
3.5
|
57.8
|
1.0
|
CZ2
|
A:TRP255
|
3.5
|
53.1
|
1.0
|
CD1
|
A:LEU247
|
3.5
|
11.6
|
1.0
|
O
|
B:GLY348
|
3.6
|
77.9
|
1.0
|
CZ
|
B:PHE331
|
3.6
|
96.7
|
1.0
|
CA
|
A:GLY176
|
3.6
|
25.3
|
1.0
|
CA
|
A:LEU179
|
3.6
|
22.6
|
1.0
|
N2
|
B:NAG805
|
3.6
|
89.5
|
1.0
|
O
|
A:GLY178
|
3.6
|
67.1
|
1.0
|
CB
|
B:THR316
|
3.6
|
60.3
|
1.0
|
CD
|
A:GLU119
|
3.6
|
8.7
|
1.0
|
CG
|
A:ASP248
|
3.6
|
28.0
|
1.0
|
O
|
B:THR314
|
3.7
|
71.9
|
1.0
|
O
|
A:VAL244
|
3.7
|
0.0
|
1.0
|
CG2
|
B:THR316
|
3.7
|
60.3
|
1.0
|
O
|
A:SER277
|
3.7
|
84.8
|
1.0
|
CB
|
B:GLU291
|
3.7
|
52.9
|
1.0
|
CG
|
B:PHE290
|
3.7
|
99.0
|
1.0
|
CG2
|
B:ILE387
|
3.7
|
73.5
|
1.0
|
CG
|
B:LEU354
|
3.7
|
26.1
|
1.0
|
C
|
B:GLY348
|
3.7
|
77.9
|
1.0
|
CA
|
B:ILE351
|
3.7
|
42.0
|
1.0
|
C
|
B:ILE351
|
3.7
|
42.0
|
1.0
|
C
|
B:GLN357
|
3.7
|
67.7
|
1.0
|
C8
|
B:NAG806
|
3.7
|
64.2
|
0.8
|
OD1
|
A:ASP246
|
3.7
|
13.3
|
1.0
|
C3
|
B:NAG806
|
3.8
|
64.2
|
0.8
|
CG2
|
B:VAL333
|
3.8
|
68.3
|
1.0
|
CE2
|
A:TRP255
|
3.8
|
53.1
|
1.0
|
CA
|
B:GLN299
|
3.8
|
46.5
|
1.0
|
CA
|
A:THR245
|
3.8
|
71.2
|
1.0
|
CB
|
B:PHE290
|
3.8
|
99.0
|
1.0
|
CD
|
B:LYS350
|
3.8
|
100.0
|
1.0
|
N
|
A:ASP180
|
3.8
|
28.1
|
1.0
|
C
|
B:GLN295
|
3.8
|
91.9
|
1.0
|
C
|
B:TYR296
|
3.8
|
86.8
|
1.0
|
C
|
A:THR245
|
3.8
|
71.2
|
1.0
|
CD1
|
B:LEU354
|
3.8
|
26.1
|
1.0
|
O
|
A:ILE175
|
3.8
|
22.2
|
1.0
|
C
|
B:ARG293
|
3.8
|
59.5
|
1.0
|
CG2
|
A:THR245
|
3.9
|
93.2
|
1.0
|
C
|
A:ASP248
|
3.9
|
22.1
|
1.0
|
CZ
|
B:PHE290
|
3.9
|
99.0
|
1.0
|
CB
|
B:LEU298
|
3.9
|
25.3
|
1.0
|
N2
|
B:NAG806
|
3.9
|
64.2
|
0.8
|
C
|
B:SER346
|
3.9
|
73.7
|
1.0
|
CA
|
B:GLU291
|
4.0
|
99.8
|
1.0
|
N
|
B:SER346
|
4.0
|
73.7
|
1.0
|
CG
|
B:TYR296
|
4.0
|
99.4
|
1.0
|
CB
|
A:ASP246
|
4.0
|
13.3
|
1.0
|
OE2
|
A:GLU119
|
4.0
|
8.7
|
1.0
|
N
|
B:VAL388
|
4.0
|
60.0
|
1.0
|
CD2
|
B:LEU345
|
4.0
|
0.0
|
1.0
|
CG2
|
B:THR318
|
4.0
|
70.0
|
1.0
|
CB
|
A:ASP248
|
4.0
|
28.0
|
1.0
|
C7
|
B:NAG806
|
4.0
|
64.2
|
0.8
|
CD
|
A:GLN279
|
4.0
|
47.4
|
1.0
|
O
|
B:LEU298
|
4.0
|
69.5
|
1.0
|
CB
|
A:THR245
|
4.0
|
93.2
|
1.0
|
N
|
B:ASP358
|
4.1
|
99.7
|
1.0
|
CE1
|
B:TYR296
|
4.1
|
99.4
|
1.0
|
CE1
|
B:PHE331
|
4.1
|
96.7
|
1.0
|
N
|
B:GLU291
|
4.1
|
99.8
|
1.0
|
CA
|
B:PRO313
|
4.1
|
49.6
|
1.0
|
OE1
|
A:GLU276
|
4.1
|
78.3
|
1.0
|
CD2
|
A:LEU247
|
4.1
|
11.6
|
1.0
|
C
|
A:GLU276
|
4.2
|
78.0
|
1.0
|
O
|
B:PRO359
|
4.2
|
92.7
|
1.0
|
O
|
A:GLU119
|
4.2
|
44.1
|
1.0
|
C
|
B:VAL388
|
4.2
|
60.0
|
1.0
|
O
|
A:GLU276
|
4.2
|
78.0
|
1.0
|
CG
|
A:GLN279
|
4.2
|
47.4
|
1.0
|
CE2
|
B:PHE331
|
4.2
|
96.7
|
1.0
|
N
|
A:GLU182
|
4.2
|
40.6
|
1.0
|
CA
|
B:PRO359
|
4.2
|
92.7
|
1.0
|
N
|
B:TYR296
|
4.2
|
86.8
|
1.0
|
O
|
B:ASP358
|
4.3
|
99.7
|
1.0
|
CA
|
B:ILE387
|
4.3
|
60.1
|
1.0
|
N
|
A:ASN217
|
4.3
|
65.3
|
1.0
|
CD2
|
B:LEU298
|
4.3
|
25.3
|
1.0
|
CG1
|
B:VAL333
|
4.3
|
68.3
|
1.0
|
CA
|
A:ASP216
|
4.3
|
48.2
|
1.0
|
CB
|
A:LEU179
|
4.3
|
33.9
|
1.0
|
CD1
|
B:PHE290
|
4.3
|
99.0
|
1.0
|
O
|
B:ARG293
|
4.4
|
59.5
|
1.0
|
O
|
B:ILE351
|
4.4
|
42.0
|
1.0
|
NH1
|
B:ARG338
|
4.4
|
100.0
|
1.0
|
CA
|
A:GLU182
|
4.4
|
40.6
|
1.0
|
CG
|
A:GLU276
|
4.4
|
78.3
|
1.0
|
CB
|
B:TYR296
|
4.4
|
99.4
|
1.0
|
O
|
A:THR245
|
4.4
|
71.2
|
1.0
|
CG
|
A:GLU119
|
4.4
|
8.7
|
1.0
|
C2
|
B:NAG806
|
4.5
|
64.2
|
0.8
|
OD1
|
A:ASP248
|
4.5
|
28.0
|
1.0
|
CD1
|
B:TYR296
|
4.5
|
99.4
|
1.0
|
CA
|
B:THR389
|
4.5
|
0.0
|
1.0
|
N
|
A:ARG181
|
4.5
|
27.8
|
1.0
|
OE2
|
B:GLU265
|
4.5
|
85.5
|
1.0
|
C
|
B:ASP358
|
4.5
|
99.7
|
1.0
|
O
|
B:GLN357
|
4.5
|
67.7
|
1.0
|
CG
|
A:ASP246
|
4.5
|
13.3
|
1.0
|
C
|
A:ASP180
|
4.5
|
28.1
|
1.0
|
CB
|
B:ILE352
|
4.5
|
72.5
|
1.0
|
CE1
|
B:PHE290
|
4.5
|
99.0
|
1.0
|
CH2
|
A:TRP255
|
4.6
|
53.1
|
1.0
|
N
|
B:LYS294
|
4.6
|
0.0
|
1.0
|
CB
|
A:PRO123
|
4.6
|
59.7
|
1.0
|
ND2
|
A:ASN278
|
4.6
|
62.2
|
1.0
|
CB
|
A:GLU276
|
4.6
|
78.3
|
1.0
|
NH1
|
A:ARG241
|
4.6
|
47.5
|
1.0
|
CB
|
A:GLU119
|
4.6
|
8.7
|
1.0
|
CB
|
B:ALA356
|
4.6
|
52.5
|
1.0
|
CG
|
B:PRO313
|
4.6
|
49.6
|
1.0
|
NE
|
B:ARG262
|
4.6
|
61.2
|
1.0
|
O7
|
B:NAG805
|
4.6
|
89.5
|
1.0
|
O
|
B:PHE331
|
4.6
|
76.3
|
1.0
|
N
|
B:PRO359
|
4.6
|
92.7
|
1.0
|
C
|
B:ILE387
|
4.6
|
60.1
|
1.0
|
CA
|
A:ASN217
|
4.7
|
65.3
|
1.0
|
C
|
B:PRO359
|
4.7
|
92.7
|
1.0
|
C7
|
B:NAG805
|
4.7
|
89.5
|
1.0
|
C
|
A:ASP216
|
4.7
|
48.2
|
1.0
|
N
|
A:GLY176
|
4.7
|
25.3
|
1.0
|
N
|
A:ASN278
|
4.7
|
54.3
|
1.0
|
N
|
A:ASP216
|
4.7
|
48.2
|
1.0
|
C8
|
A:NAG802
|
4.7
|
99.3
|
0.8
|
CB
|
B:ILE387
|
4.7
|
73.5
|
1.0
|
CD
|
B:GLU265
|
4.7
|
85.5
|
1.0
|
O7
|
B:NAG806
|
4.7
|
64.2
|
0.8
|
CG2
|
B:VAL297
|
4.7
|
77.0
|
1.0
|
CD
|
A:GLU276
|
4.7
|
78.3
|
1.0
|
C
|
A:ILE175
|
4.7
|
22.2
|
1.0
|
CG2
|
B:THR389
|
4.7
|
85.1
|
1.0
|
C
|
A:VAL244
|
4.8
|
0.0
|
1.0
|
C
|
B:GLY386
|
4.8
|
57.8
|
1.0
|
CG
|
A:PRO123
|
4.8
|
59.7
|
1.0
|
CB
|
B:ILE351
|
4.8
|
27.4
|
1.0
|
CG
|
A:TRP255
|
4.8
|
53.1
|
1.0
|
NH2
|
A:ARG181
|
4.8
|
47.9
|
1.0
|
O4
|
B:NAG806
|
4.8
|
64.2
|
0.8
|
N
|
B:VAL333
|
4.8
|
82.6
|
1.0
|
OE1
|
A:GLN279
|
4.8
|
47.4
|
1.0
|
O
|
A:ALA214
|
4.8
|
30.5
|
1.0
|
CG
|
B:GLU265
|
4.8
|
85.5
|
1.0
|
CA
|
B:VAL388
|
4.8
|
60.0
|
1.0
|
CB
|
B:VAL333
|
4.8
|
68.3
|
1.0
|
N
|
B:PRO313
|
4.8
|
49.6
|
1.0
|
N
|
B:THR314
|
4.8
|
71.9
|
1.0
|
CG
|
B:ARG262
|
4.8
|
61.2
|
1.0
|
CB
|
B:THR389
|
4.8
|
85.1
|
1.0
|
O
|
B:TYR296
|
4.8
|
86.8
|
1.0
|
N
|
B:THR389
|
4.9
|
0.0
|
1.0
|
N
|
B:THR316
|
4.9
|
79.8
|
1.0
|
C
|
B:THR314
|
4.9
|
71.9
|
1.0
|
N
|
A:THR245
|
4.9
|
71.2
|
1.0
|
CD
|
B:PRO313
|
4.9
|
49.6
|
1.0
|
CG
|
B:LEU298
|
4.9
|
25.3
|
1.0
|
CE
|
B:LYS350
|
4.9
|
100.0
|
1.0
|
CD2
|
A:TRP255
|
4.9
|
53.1
|
1.0
|
C
|
B:PRO313
|
4.9
|
49.6
|
1.0
|
CD
|
B:ARG262
|
5.0
|
61.2
|
1.0
|
C
|
A:GLU119
|
5.0
|
44.1
|
1.0
|
C
|
B:GLN299
|
5.0
|
46.5
|
1.0
|
CG
|
B:GLU291
|
5.0
|
52.9
|
1.0
|
CA
|
B:THR316
|
5.0
|
79.8
|
1.0
|
|
Calcium binding site 6 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 6 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca910
b:10.5
occ:1.00
|
C
|
B:LYS294
|
0.2
|
0.0
|
1.0
|
O
|
B:ASN385
|
0.4
|
70.8
|
1.0
|
C
|
A:ASN278
|
0.4
|
54.3
|
1.0
|
CZ
|
A:ARG241
|
0.4
|
47.5
|
1.0
|
CA
|
B:LYS294
|
0.5
|
0.0
|
1.0
|
C
|
A:ASN215
|
0.5
|
34.3
|
1.0
|
C1
|
B:NAG806
|
0.6
|
64.2
|
0.8
|
CG1
|
B:ILE387
|
0.7
|
73.5
|
1.0
|
OE2
|
A:GLU276
|
0.7
|
78.3
|
1.0
|
N
|
A:GLN279
|
0.7
|
65.4
|
1.0
|
CB
|
B:THR318
|
0.8
|
70.0
|
1.0
|
OG1
|
B:THR318
|
0.9
|
70.0
|
1.0
|
C
|
B:ASN385
|
0.9
|
70.8
|
1.0
|
OD2
|
A:ASP246
|
1.0
|
13.3
|
1.0
|
O
|
B:LYS294
|
1.0
|
0.0
|
1.0
|
CG
|
A:ASN278
|
1.0
|
62.2
|
1.0
|
N
|
B:LYS361
|
1.1
|
71.2
|
1.0
|
NH2
|
A:ARG241
|
1.1
|
47.5
|
1.0
|
C
|
B:ASP360
|
1.1
|
65.5
|
1.0
|
OD1
|
A:ASN278
|
1.1
|
62.2
|
1.0
|
O
|
A:ASN215
|
1.1
|
34.3
|
1.0
|
CA
|
A:ASN278
|
1.2
|
54.3
|
1.0
|
N
|
A:ASP216
|
1.2
|
48.2
|
1.0
|
NH1
|
A:ARG241
|
1.3
|
47.5
|
1.0
|
OH
|
B:TYR369
|
1.3
|
55.3
|
1.0
|
O
|
A:ASN278
|
1.3
|
54.3
|
1.0
|
N
|
B:GLN295
|
1.3
|
91.9
|
1.0
|
CD1
|
B:ILE387
|
1.4
|
73.5
|
1.0
|
CA
|
B:GLN295
|
1.4
|
91.9
|
1.0
|
O7
|
B:NAG806
|
1.4
|
64.2
|
0.8
|
CB
|
B:ILE387
|
1.4
|
73.5
|
1.0
|
ND2
|
A:ASN278
|
1.5
|
62.2
|
1.0
|
CG
|
B:GLU291
|
1.5
|
52.9
|
1.0
|
N
|
B:LYS294
|
1.5
|
0.0
|
1.0
|
O5
|
B:NAG806
|
1.6
|
64.2
|
0.8
|
CB
|
B:LYS294
|
1.6
|
100.0
|
1.0
|
CG
|
A:ASP246
|
1.6
|
13.3
|
1.0
|
CA
|
B:ASP360
|
1.7
|
65.5
|
1.0
|
N
|
B:TYR296
|
1.7
|
86.8
|
1.0
|
C2
|
B:NAG806
|
1.7
|
64.2
|
0.8
|
CA
|
A:ASN215
|
1.7
|
34.3
|
1.0
|
NE
|
A:ARG241
|
1.7
|
47.5
|
1.0
|
CB
|
A:ASN278
|
1.8
|
62.2
|
1.0
|
OD1
|
A:ASP248
|
1.8
|
28.0
|
1.0
|
CD
|
A:GLU276
|
1.8
|
78.3
|
1.0
|
O
|
B:PRO359
|
1.8
|
92.7
|
1.0
|
OG1
|
B:THR320
|
1.8
|
82.8
|
1.0
|
O
|
B:ASP360
|
1.8
|
65.5
|
1.0
|
C7
|
B:NAG806
|
1.9
|
64.2
|
0.8
|
CG2
|
B:THR318
|
1.9
|
70.0
|
1.0
|
O
|
B:ASP358
|
2.0
|
99.7
|
1.0
|
OD1
|
A:ASN215
|
2.0
|
28.6
|
1.0
|
N
|
B:GLY386
|
2.0
|
57.8
|
1.0
|
O
|
B:TYR296
|
2.0
|
86.8
|
1.0
|
CA
|
A:ASP216
|
2.0
|
48.2
|
1.0
|
O
|
A:ASN217
|
2.0
|
65.3
|
1.0
|
N
|
A:ASN278
|
2.0
|
54.3
|
1.0
|
CA
|
B:ASN385
|
2.1
|
70.8
|
1.0
|
C
|
B:GLN295
|
2.1
|
91.9
|
1.0
|
CA
|
A:GLN279
|
2.1
|
65.4
|
1.0
|
O
|
A:ALA254
|
2.1
|
24.4
|
1.0
|
CE
|
B:LYS224
|
2.1
|
100.0
|
1.0
|
O
|
B:ARG293
|
2.1
|
59.5
|
1.0
|
CA
|
B:THR318
|
2.1
|
63.9
|
1.0
|
N2
|
B:NAG806
|
2.1
|
64.2
|
0.8
|
C
|
B:ARG293
|
2.1
|
59.5
|
1.0
|
O
|
B:VAL321
|
2.2
|
0.0
|
1.0
|
OD1
|
A:ASN304
|
2.2
|
57.1
|
1.0
|
OD1
|
A:ASP246
|
2.2
|
13.3
|
1.0
|
CA
|
B:GLU291
|
2.2
|
99.8
|
1.0
|
O
|
A:TRP255
|
2.2
|
50.6
|
1.0
|
CG2
|
B:ILE387
|
2.2
|
73.5
|
1.0
|
C
|
B:PRO359
|
2.2
|
92.7
|
1.0
|
N
|
B:ASP360
|
2.3
|
65.5
|
1.0
|
CB
|
A:ASP246
|
2.3
|
13.3
|
1.0
|
C
|
B:THR318
|
2.3
|
63.9
|
1.0
|
CB
|
A:GLN279
|
2.4
|
47.4
|
1.0
|
CB
|
B:GLU291
|
2.4
|
52.9
|
1.0
|
CZ
|
B:TYR369
|
2.4
|
55.3
|
1.0
|
OE1
|
A:GLU276
|
2.4
|
78.3
|
1.0
|
CA
|
B:LYS361
|
2.4
|
71.2
|
1.0
|
O
|
A:SER277
|
2.4
|
84.8
|
1.0
|
CA
|
B:THR320
|
2.5
|
81.8
|
1.0
|
C
|
B:TYR296
|
2.5
|
86.8
|
1.0
|
ND2
|
A:ASN304
|
2.5
|
57.1
|
1.0
|
N
|
B:ILE387
|
2.5
|
60.1
|
1.0
|
C
|
A:SER277
|
2.5
|
84.8
|
1.0
|
C
|
B:GLY386
|
2.5
|
57.8
|
1.0
|
N
|
A:ASN217
|
2.5
|
65.3
|
1.0
|
C5
|
B:NAG806
|
2.6
|
64.2
|
0.8
|
O
|
B:PHE290
|
2.6
|
52.9
|
1.0
|
CG
|
B:LYS294
|
2.6
|
100.0
|
1.0
|
CB
|
B:ASN385
|
2.6
|
0.0
|
1.0
|
CB
|
B:GLN295
|
2.6
|
77.0
|
1.0
|
CG
|
A:GLU276
|
2.6
|
78.3
|
1.0
|
O
|
B:VAL319
|
2.6
|
48.1
|
1.0
|
C
|
B:VAL319
|
2.6
|
48.1
|
1.0
|
CB
|
B:THR320
|
2.6
|
82.8
|
1.0
|
ND2
|
B:ASN385
|
2.6
|
0.0
|
1.0
|
CB
|
A:ASN215
|
2.6
|
28.6
|
1.0
|
O
|
B:THR318
|
2.6
|
63.9
|
1.0
|
CG
|
A:ASN215
|
2.6
|
28.6
|
1.0
|
CA
|
B:GLY386
|
2.6
|
57.8
|
1.0
|
CA
|
B:ILE387
|
2.6
|
60.1
|
1.0
|
O5
|
B:NAG807
|
2.6
|
62.6
|
0.5
|
O
|
B:GLY348
|
2.7
|
77.9
|
1.0
|
CE1
|
B:TYR369
|
2.7
|
55.3
|
1.0
|
CG
|
B:GLN363
|
2.7
|
0.0
|
1.0
|
O
|
A:GLN279
|
2.7
|
65.4
|
1.0
|
C
|
A:ASP216
|
2.7
|
48.2
|
1.0
|
CD
|
B:GLU291
|
2.7
|
52.9
|
1.0
|
N
|
A:ASN215
|
2.7
|
34.3
|
1.0
|
N
|
B:VAL319
|
2.8
|
48.1
|
1.0
|
C
|
A:GLN279
|
2.8
|
65.4
|
1.0
|
CD
|
A:ARG241
|
2.8
|
47.5
|
1.0
|
N
|
B:THR318
|
2.8
|
63.9
|
1.0
|
NZ
|
B:LYS224
|
2.8
|
100.0
|
1.0
|
C
|
A:TRP255
|
2.8
|
50.6
|
1.0
|
CA
|
B:TYR296
|
2.8
|
86.8
|
1.0
|
N
|
B:THR320
|
2.8
|
81.8
|
1.0
|
CG
|
B:ASN385
|
2.9
|
0.0
|
1.0
|
C
|
B:ASP358
|
2.9
|
99.7
|
1.0
|
CB
|
A:SER309
|
2.9
|
93.3
|
1.0
|
C8
|
B:NAG806
|
2.9
|
64.2
|
0.8
|
CG2
|
B:VAL297
|
2.9
|
77.0
|
1.0
|
O
|
B:GLY386
|
2.9
|
57.8
|
1.0
|
CG
|
A:ASN304
|
2.9
|
57.1
|
1.0
|
O
|
A:ASP274
|
2.9
|
85.4
|
1.0
|
CG
|
B:LYS224
|
2.9
|
100.0
|
1.0
|
N
|
B:GLU291
|
2.9
|
99.8
|
1.0
|
C1
|
B:NAG807
|
2.9
|
62.6
|
0.5
|
CB
|
B:ASP358
|
2.9
|
96.2
|
1.0
|
OE1
|
B:GLU291
|
3.0
|
52.9
|
1.0
|
CG
|
A:ASP248
|
3.0
|
28.0
|
1.0
|
CA
|
A:TRP255
|
3.0
|
50.6
|
1.0
|
C3
|
B:NAG806
|
3.0
|
64.2
|
0.8
|
C
|
A:ALA254
|
3.0
|
24.4
|
1.0
|
CG
|
A:GLN279
|
3.0
|
47.4
|
1.0
|
CG
|
B:GLN295
|
3.0
|
77.0
|
1.0
|
CG2
|
B:THR389
|
3.0
|
85.1
|
1.0
|
CA
|
B:VAL297
|
3.0
|
58.8
|
1.0
|
N
|
B:VAL321
|
3.0
|
0.0
|
1.0
|
C
|
A:ASN217
|
3.0
|
65.3
|
1.0
|
CG2
|
B:THR320
|
3.1
|
82.8
|
1.0
|
CG2
|
B:THR225
|
3.1
|
68.6
|
1.0
|
CB
|
B:ASP360
|
3.1
|
90.8
|
1.0
|
C
|
B:PHE290
|
3.1
|
52.9
|
1.0
|
O
|
A:SER309
|
3.1
|
59.9
|
1.0
|
N
|
B:VAL297
|
3.1
|
58.8
|
1.0
|
CD
|
B:LYS224
|
3.1
|
100.0
|
1.0
|
O
|
A:GLY120
|
3.1
|
54.5
|
1.0
|
N
|
B:ASP358
|
3.2
|
99.7
|
1.0
|
OG
|
A:SER309
|
3.2
|
93.3
|
1.0
|
CA
|
B:VAL319
|
3.2
|
48.1
|
1.0
|
OD1
|
B:ASP358
|
3.2
|
96.2
|
1.0
|
N
|
B:ASN385
|
3.2
|
70.8
|
1.0
|
C
|
B:LYS361
|
3.2
|
71.2
|
1.0
|
O
|
B:GLN295
|
3.2
|
91.9
|
1.0
|
C
|
B:GLU291
|
3.2
|
99.8
|
1.0
|
CB
|
B:ASN382
|
3.2
|
64.0
|
1.0
|
CD
|
B:GLN363
|
3.2
|
0.0
|
1.0
|
CB
|
A:ASP216
|
3.3
|
10.1
|
1.0
|
CB
|
A:ALA257
|
3.3
|
51.8
|
1.0
|
CA
|
B:ASP358
|
3.3
|
99.7
|
1.0
|
CB
|
B:LYS361
|
3.3
|
99.8
|
1.0
|
CD
|
A:PRO123
|
3.3
|
59.7
|
1.0
|
N
|
A:ALA257
|
3.3
|
51.8
|
1.0
|
CA
|
A:ASN217
|
3.3
|
65.3
|
1.0
|
CG
|
A:PRO123
|
3.3
|
59.7
|
1.0
|
OD1
|
A:ASP274
|
3.3
|
0.0
|
1.0
|
O
|
B:ALA356
|
3.3
|
52.5
|
1.0
|
C
|
B:VAL321
|
3.4
|
0.0
|
1.0
|
C4
|
B:NAG806
|
3.4
|
64.2
|
0.8
|
C
|
A:ALA214
|
3.4
|
30.5
|
1.0
|
CB
|
A:ASP274
|
3.4
|
0.0
|
1.0
|
C
|
B:THR320
|
3.4
|
81.8
|
1.0
|
N
|
A:TRP255
|
3.5
|
50.6
|
1.0
|
O
|
B:LYS224
|
3.5
|
96.8
|
1.0
|
CB
|
B:VAL297
|
3.5
|
77.0
|
1.0
|
O
|
B:LYS361
|
3.5
|
71.2
|
1.0
|
O
|
A:ALA214
|
3.5
|
30.5
|
1.0
|
OE2
|
A:GLU238
|
3.5
|
84.3
|
1.0
|
CD2
|
B:LEU367
|
3.5
|
55.1
|
1.0
|
CG
|
A:ASP216
|
3.5
|
10.1
|
1.0
|
CA
|
B:ARG293
|
3.5
|
59.5
|
1.0
|
CA
|
B:PRO359
|
3.5
|
92.7
|
1.0
|
CE2
|
B:TYR369
|
3.5
|
55.3
|
1.0
|
CB
|
B:GLN363
|
3.6
|
0.0
|
1.0
|
O
|
A:ASP216
|
3.6
|
48.2
|
1.0
|
C
|
B:GLY348
|
3.6
|
77.9
|
1.0
|
OD2
|
A:ASP248
|
3.6
|
28.0
|
1.0
|
OE1
|
B:GLN363
|
3.6
|
0.0
|
1.0
|
CB
|
B:TYR296
|
3.6
|
99.4
|
1.0
|
NE2
|
A:GLN279
|
3.6
|
47.4
|
1.0
|
CG
|
B:ASN382
|
3.6
|
64.0
|
1.0
|
ND2
|
A:ASN215
|
3.7
|
28.6
|
1.0
|
N
|
A:GLN256
|
3.7
|
30.5
|
1.0
|
NE2
|
B:GLN363
|
3.7
|
0.0
|
1.0
|
C6
|
B:NAG806
|
3.7
|
64.2
|
0.8
|
N
|
B:PRO359
|
3.7
|
92.7
|
1.0
|
C
|
A:SER309
|
3.7
|
59.9
|
1.0
|
OD1
|
B:ASN385
|
3.7
|
0.0
|
1.0
|
CG
|
A:GLN122
|
3.7
|
73.0
|
1.0
|
O6
|
B:NAG805
|
3.7
|
89.5
|
1.0
|
CD1
|
A:ILE281
|
3.7
|
71.3
|
1.0
|
OD2
|
A:ASP216
|
3.7
|
10.1
|
1.0
|
O
|
B:GLU291
|
3.7
|
99.8
|
1.0
|
C
|
B:ILE387
|
3.7
|
60.1
|
1.0
|
CG
|
B:ASP358
|
3.7
|
96.2
|
1.0
|
C
|
A:GLN256
|
3.7
|
30.5
|
1.0
|
CG2
|
A:VAL310
|
3.7
|
67.6
|
1.0
|
CG2
|
A:VAL244
|
3.8
|
58.7
|
1.0
|
N
|
A:SER277
|
3.8
|
84.8
|
1.0
|
N
|
B:GLN362
|
3.8
|
0.0
|
1.0
|
C5
|
B:NAG807
|
3.8
|
62.6
|
0.5
|
OD1
|
B:ASN382
|
3.8
|
64.0
|
1.0
|
CD
|
B:LYS294
|
3.8
|
100.0
|
1.0
|
OE1
|
A:GLN122
|
3.8
|
73.0
|
1.0
|
CD1
|
B:TYR369
|
3.8
|
55.3
|
1.0
|
CD
|
A:GLN122
|
3.8
|
73.0
|
1.0
|
CA
|
A:ASP246
|
3.8
|
85.4
|
1.0
|
O
|
B:THR316
|
3.8
|
79.8
|
1.0
|
OE2
|
B:GLU291
|
3.8
|
52.9
|
1.0
|
CA
|
A:GLY120
|
3.8
|
54.5
|
1.0
|
OD1
|
A:ASP216
|
3.8
|
10.1
|
1.0
|
O
|
B:ILE387
|
3.9
|
60.1
|
1.0
|
CA
|
A:SER309
|
3.9
|
59.9
|
1.0
|
CA
|
A:ALA257
|
3.9
|
51.8
|
1.0
|
CB
|
A:ASP248
|
3.9
|
28.0
|
1.0
|
C
|
A:ASP274
|
3.9
|
85.4
|
1.0
|
CA
|
A:ALA254
|
3.9
|
24.4
|
1.0
|
CG
|
A:ASP274
|
3.9
|
0.0
|
1.0
|
CD
|
A:GLN279
|
3.9
|
47.4
|
1.0
|
CA
|
B:VAL321
|
3.9
|
0.0
|
1.0
|
CA
|
B:GLY348
|
3.9
|
77.9
|
1.0
|
N
|
A:ASP274
|
3.9
|
85.4
|
1.0
|
N
|
B:ARG293
|
3.9
|
59.5
|
1.0
|
CA
|
A:GLN256
|
4.0
|
30.5
|
1.0
|
CG
|
A:ARG241
|
4.0
|
47.5
|
1.0
|
CA
|
A:SER277
|
4.0
|
84.8
|
1.0
|
CG1
|
B:VAL297
|
4.0
|
77.0
|
1.0
|
CD1
|
B:TYR296
|
4.0
|
99.4
|
1.0
|
N
|
B:LEU292
|
4.0
|
96.5
|
1.0
|
CB
|
A:GLU276
|
4.0
|
78.3
|
1.0
|
CG
|
A:PRO219
|
4.0
|
52.0
|
1.0
|
C
|
B:ALA317
|
4.0
|
65.8
|
1.0
|
C
|
A:GLY120
|
4.0
|
54.5
|
1.0
|
N
|
A:GLY280
|
4.0
|
0.0
|
1.0
|
CB
|
A:ALA214
|
4.0
|
30.5
|
1.0
|
CB
|
A:ASN217
|
4.1
|
53.4
|
1.0
|
CA
|
A:ASP274
|
4.1
|
85.4
|
1.0
|
CB
|
A:ALA254
|
4.1
|
24.4
|
1.0
|
OG
|
B:SER315
|
4.1
|
41.5
|
1.0
|
O3
|
B:NAG806
|
4.1
|
64.2
|
0.8
|
O
|
B:LEU354
|
4.1
|
62.9
|
1.0
|
O
|
B:ASN382
|
4.1
|
65.2
|
1.0
|
C6
|
B:NAG807
|
4.1
|
62.6
|
0.5
|
CB
|
A:TRP255
|
4.2
|
53.1
|
1.0
|
C2
|
B:NAG807
|
4.2
|
62.6
|
0.5
|
O6
|
B:NAG806
|
4.2
|
64.2
|
0.8
|
CA
|
B:THR322
|
4.2
|
85.2
|
1.0
|
CD
|
B:GLN295
|
4.2
|
77.0
|
1.0
|
CG
|
B:ASP360
|
4.2
|
90.8
|
1.0
|
OE1
|
A:GLU238
|
4.2
|
84.3
|
1.0
|
C
|
B:VAL297
|
4.2
|
58.8
|
1.0
|
C
|
B:GLN357
|
4.2
|
67.7
|
1.0
|
ND2
|
B:ASN382
|
4.2
|
64.0
|
1.0
|
N
|
A:SER309
|
4.2
|
59.9
|
1.0
|
CD
|
B:LYS366
|
4.2
|
78.0
|
1.0
|
N
|
A:ALA218
|
4.2
|
45.7
|
1.0
|
N
|
B:LEU298
|
4.2
|
69.5
|
1.0
|
CB
|
B:THR225
|
4.2
|
68.6
|
1.0
|
CG
|
A:TRP255
|
4.2
|
53.1
|
1.0
|
N
|
B:VAL323
|
4.2
|
0.0
|
1.0
|
CB
|
B:THR389
|
4.2
|
85.1
|
1.0
|
CG2
|
B:VAL323
|
4.3
|
37.3
|
1.0
|
C
|
B:ASP384
|
4.3
|
76.5
|
1.0
|
CB
|
A:VAL310
|
4.3
|
67.6
|
1.0
|
C6
|
B:NAG805
|
4.3
|
89.5
|
1.0
|
NE2
|
A:GLN122
|
4.3
|
73.0
|
1.0
|
CD1
|
B:LEU367
|
4.3
|
55.1
|
1.0
|
O
|
A:GLN256
|
4.3
|
30.5
|
1.0
|
O
|
B:LEU298
|
4.3
|
69.5
|
1.0
|
CA
|
B:GLN357
|
4.3
|
67.7
|
1.0
|
C
|
B:LYS224
|
4.3
|
96.8
|
1.0
|
CG
|
B:TYR296
|
4.4
|
99.4
|
1.0
|
CD
|
A:GLU238
|
4.4
|
84.3
|
1.0
|
CB
|
B:LYS224
|
4.4
|
100.0
|
1.0
|
CG
|
B:LEU367
|
4.4
|
55.1
|
1.0
|
N
|
B:THR322
|
4.4
|
85.2
|
1.0
|
C
|
B:ALA356
|
4.4
|
52.5
|
1.0
|
CD1
|
A:TRP255
|
4.4
|
53.1
|
1.0
|
CB
|
B:VAL323
|
4.4
|
37.3
|
1.0
|
N
|
A:ASP246
|
4.4
|
85.4
|
1.0
|
N
|
B:GLN363
|
4.4
|
0.0
|
1.0
|
CB
|
A:PRO219
|
4.4
|
52.0
|
1.0
|
CA
|
B:GLN363
|
4.4
|
0.0
|
1.0
|
CB
|
A:ASN304
|
4.4
|
57.1
|
1.0
|
N
|
A:GLU276
|
4.4
|
78.0
|
1.0
|
CD2
|
B:PHE290
|
4.5
|
99.0
|
1.0
|
CB
|
A:GLN122
|
4.5
|
73.0
|
1.0
|
OE1
|
B:GLN295
|
4.5
|
77.0
|
1.0
|
CB
|
B:ARG293
|
4.5
|
0.0
|
1.0
|
N
|
A:VAL310
|
4.5
|
53.9
|
1.0
|
O
|
B:ASP384
|
4.5
|
76.5
|
1.0
|
CA
|
B:PHE290
|
4.5
|
52.9
|
1.0
|
CA
|
A:GLN122
|
4.5
|
41.9
|
1.0
|
O4
|
B:NAG806
|
4.5
|
64.2
|
0.8
|
CA
|
B:ASN382
|
4.5
|
65.2
|
1.0
|
CD2
|
A:TRP255
|
4.5
|
53.1
|
1.0
|
CA
|
A:ALA214
|
4.5
|
30.5
|
1.0
|
OE1
|
B:GLN357
|
4.5
|
96.0
|
1.0
|
ND2
|
A:ASN217
|
4.6
|
53.4
|
1.0
|
O
|
B:VAL323
|
4.6
|
0.0
|
1.0
|
CD2
|
B:TYR369
|
4.6
|
55.3
|
1.0
|
CG2
|
A:THR177
|
4.6
|
34.9
|
1.0
|
N
|
B:ASN382
|
4.6
|
65.2
|
1.0
|
CA
|
B:THR225
|
4.6
|
79.0
|
1.0
|
O
|
B:THR320
|
4.6
|
81.8
|
1.0
|
OD1
|
B:ASP360
|
4.6
|
90.8
|
1.0
|
CB
|
B:VAL321
|
4.6
|
44.5
|
1.0
|
CA
|
A:ALA218
|
4.6
|
45.7
|
1.0
|
O
|
B:ARG347
|
4.6
|
56.1
|
1.0
|
O
|
A:VAL121
|
4.6
|
44.7
|
1.0
|
CG
|
B:TYR369
|
4.6
|
55.3
|
1.0
|
N
|
B:ALA356
|
4.6
|
52.5
|
1.0
|
C
|
A:ASP246
|
4.6
|
85.4
|
1.0
|
CA
|
B:ALA317
|
4.6
|
65.8
|
1.0
|
CE1
|
B:TYR296
|
4.7
|
99.4
|
1.0
|
OH
|
A:TYR259
|
4.7
|
39.1
|
1.0
|
OG1
|
B:THR322
|
4.7
|
99.7
|
1.0
|
N
|
B:GLU349
|
4.7
|
68.4
|
1.0
|
CG1
|
B:VAL355
|
4.7
|
82.9
|
1.0
|
N
|
A:ASP248
|
4.7
|
22.1
|
1.0
|
CB
|
B:VAL319
|
4.7
|
20.8
|
1.0
|
N
|
A:PRO123
|
4.7
|
59.7
|
1.0
|
C
|
B:THR316
|
4.7
|
79.8
|
1.0
|
CB
|
B:PRO359
|
4.7
|
92.7
|
1.0
|
CG
|
B:LYS361
|
4.7
|
99.8
|
1.0
|
C
|
A:ALA218
|
4.7
|
45.7
|
1.0
|
CB
|
A:PRO123
|
4.8
|
59.7
|
1.0
|
OD1
|
B:ASP325
|
4.8
|
64.5
|
1.0
|
CB
|
A:ILE281
|
4.8
|
71.3
|
1.0
|
CG1
|
A:ILE281
|
4.8
|
71.3
|
1.0
|
N
|
A:PRO219
|
4.8
|
52.0
|
1.0
|
CD
|
A:PRO219
|
4.8
|
52.0
|
1.0
|
C
|
B:LEU292
|
4.8
|
96.5
|
1.0
|
O
|
B:ALA317
|
4.8
|
65.8
|
1.0
|
C
|
A:GLU276
|
4.8
|
78.0
|
1.0
|
CB
|
A:SER277
|
4.8
|
97.7
|
1.0
|
OD2
|
B:ASP360
|
4.8
|
90.8
|
1.0
|
CD1
|
A:LEU312
|
4.8
|
28.0
|
1.0
|
N
|
A:LEU247
|
4.8
|
48.5
|
1.0
|
CA
|
A:GLU276
|
4.8
|
78.0
|
1.0
|
N
|
B:VAL388
|
4.8
|
60.0
|
1.0
|
CD1
|
A:PHE308
|
4.8
|
0.0
|
1.0
|
CE2
|
A:TRP255
|
4.8
|
53.1
|
1.0
|
CB
|
B:PHE290
|
4.8
|
99.0
|
1.0
|
CE3
|
A:TRP255
|
4.8
|
53.1
|
1.0
|
C
|
B:ASN382
|
4.8
|
65.2
|
1.0
|
CA
|
A:PRO219
|
4.8
|
52.0
|
1.0
|
NE2
|
B:GLN365
|
4.9
|
0.0
|
1.0
|
CE2
|
B:PHE290
|
4.9
|
99.0
|
1.0
|
OG1
|
B:THR389
|
4.9
|
85.1
|
1.0
|
OE1
|
B:GLN365
|
4.9
|
0.0
|
1.0
|
N2
|
B:NAG807
|
4.9
|
62.6
|
0.5
|
CD
|
B:GLN365
|
4.9
|
0.0
|
1.0
|
CG2
|
A:THR273
|
4.9
|
77.4
|
1.0
|
O
|
A:LEU242
|
4.9
|
98.3
|
1.0
|
CA
|
B:CA915
|
4.9
|
70.2
|
1.0
|
NE1
|
A:TRP255
|
4.9
|
53.1
|
1.0
|
C
|
B:THR322
|
4.9
|
85.2
|
1.0
|
CG
|
B:LYS366
|
4.9
|
78.0
|
1.0
|
CB
|
B:GLN362
|
4.9
|
0.0
|
1.0
|
CA
|
B:VAL355
|
4.9
|
83.7
|
1.0
|
CD
|
B:PRO359
|
4.9
|
92.7
|
1.0
|
OE1
|
A:GLN279
|
4.9
|
47.4
|
1.0
|
CA
|
B:VAL323
|
5.0
|
0.0
|
1.0
|
N
|
B:GLN357
|
5.0
|
67.7
|
1.0
|
N
|
B:THR225
|
5.0
|
79.0
|
1.0
|
OD2
|
B:ASP358
|
5.0
|
96.2
|
1.0
|
CG
|
B:GLN299
|
5.0
|
0.0
|
1.0
|
CA
|
B:LYS224
|
5.0
|
96.8
|
1.0
|
CG
|
A:ASN217
|
5.0
|
53.4
|
1.0
|
CB
|
A:ARG241
|
5.0
|
47.5
|
1.0
|
CA
|
A:ASP248
|
5.0
|
22.1
|
1.0
|
|
Calcium binding site 7 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 7 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca911
b:37.4
occ:1.00
|
O
|
A:ASP289
|
0.5
|
0.0
|
1.0
|
N
|
A:ASP414
|
0.5
|
82.6
|
1.0
|
CD1
|
A:PHE290
|
0.6
|
99.0
|
1.0
|
CG2
|
A:THR413
|
0.6
|
0.0
|
1.0
|
O
|
A:GLU328
|
0.7
|
0.0
|
1.0
|
CB
|
A:ASP414
|
0.9
|
82.2
|
1.0
|
C
|
A:GLU328
|
0.9
|
0.0
|
1.0
|
CG
|
A:PHE290
|
1.0
|
99.0
|
1.0
|
CZ
|
A:PHE370
|
1.0
|
98.2
|
1.0
|
CB
|
A:THR413
|
1.0
|
0.0
|
1.0
|
OE2
|
A:GLU265
|
1.2
|
85.5
|
1.0
|
C
|
A:THR413
|
1.2
|
99.8
|
1.0
|
C
|
A:ASP289
|
1.2
|
0.0
|
1.0
|
CE1
|
A:PHE290
|
1.2
|
99.0
|
1.0
|
OG1
|
A:THR413
|
1.3
|
0.0
|
1.0
|
CZ
|
A:PHE290
|
1.3
|
99.0
|
1.0
|
CB
|
A:PHE290
|
1.4
|
99.0
|
1.0
|
CA
|
A:ASP414
|
1.4
|
82.6
|
1.0
|
CG
|
A:GLU265
|
1.4
|
85.5
|
1.0
|
CA
|
A:GLU328
|
1.4
|
0.0
|
1.0
|
CD
|
A:GLU328
|
1.5
|
0.0
|
1.0
|
OE1
|
A:GLU328
|
1.5
|
0.0
|
1.0
|
OE2
|
A:GLU328
|
1.5
|
0.0
|
1.0
|
CD
|
A:GLU265
|
1.6
|
85.5
|
1.0
|
CA
|
A:THR413
|
1.6
|
99.8
|
1.0
|
N
|
A:GLU328
|
1.7
|
0.0
|
1.0
|
CE2
|
A:PHE370
|
1.7
|
98.2
|
1.0
|
CA
|
A:PHE290
|
1.8
|
52.9
|
1.0
|
CB
|
A:GLU328
|
1.9
|
0.0
|
1.0
|
CB
|
A:GLU265
|
1.9
|
85.5
|
1.0
|
N
|
A:PHE290
|
1.9
|
52.9
|
1.0
|
CE1
|
A:PHE370
|
1.9
|
98.2
|
1.0
|
OH
|
A:TYR296
|
2.0
|
99.4
|
1.0
|
OE2
|
A:GLU291
|
2.0
|
52.9
|
1.0
|
CG1
|
A:VAL263
|
2.0
|
60.8
|
1.0
|
CE2
|
A:PHE290
|
2.0
|
99.0
|
1.0
|
N
|
A:ALA329
|
2.0
|
93.5
|
1.0
|
CG
|
A:ASP414
|
2.1
|
82.2
|
1.0
|
CD2
|
A:PHE290
|
2.1
|
99.0
|
1.0
|
CG2
|
A:VAL263
|
2.1
|
60.8
|
1.0
|
OE2
|
A:GLU232
|
2.1
|
49.7
|
1.0
|
O
|
A:THR413
|
2.1
|
99.8
|
1.0
|
OD2
|
A:ASP289
|
2.2
|
99.7
|
1.0
|
OD2
|
A:ASP414
|
2.3
|
82.2
|
1.0
|
CA
|
A:CA912
|
2.3
|
90.9
|
1.0
|
CA
|
A:ALA329
|
2.3
|
93.5
|
1.0
|
CG
|
A:GLU328
|
2.4
|
0.0
|
1.0
|
C
|
A:ASP414
|
2.4
|
82.6
|
1.0
|
OG
|
A:SER368
|
2.5
|
0.0
|
1.0
|
NH1
|
A:ARG293
|
2.5
|
0.0
|
1.0
|
CA
|
A:ASP289
|
2.6
|
0.0
|
1.0
|
CB
|
A:VAL263
|
2.6
|
60.8
|
1.0
|
OE1
|
A:GLU265
|
2.6
|
85.5
|
1.0
|
CD
|
A:GLU232
|
2.6
|
49.7
|
1.0
|
OD2
|
A:ASP360
|
2.7
|
90.8
|
1.0
|
CD
|
A:PRO330
|
2.7
|
43.9
|
1.0
|
CG
|
A:ASP289
|
2.7
|
99.7
|
1.0
|
CA
|
A:GLY420
|
2.8
|
93.4
|
1.0
|
OD1
|
A:ASP360
|
2.8
|
90.8
|
1.0
|
CA
|
A:GLU265
|
2.8
|
67.9
|
1.0
|
CG
|
A:PRO359
|
2.8
|
92.7
|
1.0
|
OD2
|
A:ASP358
|
2.9
|
96.2
|
1.0
|
O
|
A:ASP414
|
2.9
|
82.6
|
1.0
|
CB
|
A:ASP289
|
2.9
|
99.7
|
1.0
|
OE1
|
A:GLU232
|
2.9
|
49.7
|
1.0
|
CA
|
A:CA915
|
2.9
|
70.2
|
1.0
|
O
|
A:VAL419
|
2.9
|
0.0
|
1.0
|
NZ
|
A:LYS383
|
2.9
|
100.0
|
1.0
|
N
|
A:THR413
|
2.9
|
99.8
|
1.0
|
C
|
A:ASN327
|
2.9
|
0.0
|
1.0
|
C
|
A:ALA329
|
3.0
|
93.5
|
1.0
|
C
|
A:PHE290
|
3.0
|
52.9
|
1.0
|
N
|
A:GLU291
|
3.0
|
99.8
|
1.0
|
CG
|
A:ARG293
|
3.0
|
0.0
|
1.0
|
O
|
A:GLY420
|
3.1
|
93.4
|
1.0
|
CE2
|
A:TYR296
|
3.1
|
99.4
|
1.0
|
CD
|
A:GLU291
|
3.1
|
52.9
|
1.0
|
OD1
|
A:ASP414
|
3.1
|
82.2
|
1.0
|
CZ
|
A:TYR296
|
3.1
|
99.4
|
1.0
|
CD1
|
A:PHE370
|
3.1
|
98.2
|
1.0
|
CD2
|
A:PHE370
|
3.1
|
98.2
|
1.0
|
CG
|
A:PRO330
|
3.1
|
43.9
|
1.0
|
N
|
A:ASP289
|
3.2
|
0.0
|
1.0
|
OD1
|
A:ASN327
|
3.2
|
0.0
|
1.0
|
CZ
|
A:ARG293
|
3.2
|
0.0
|
1.0
|
CG
|
A:ASP360
|
3.2
|
90.8
|
1.0
|
NH2
|
A:ARG293
|
3.2
|
0.0
|
1.0
|
N
|
A:GLY420
|
3.2
|
93.4
|
1.0
|
N
|
A:PRO330
|
3.3
|
43.9
|
1.0
|
C
|
A:GLY420
|
3.3
|
93.4
|
1.0
|
CZ
|
A:PHE268
|
3.3
|
68.6
|
1.0
|
OE1
|
A:GLU291
|
3.4
|
52.9
|
1.0
|
CB
|
A:LEU292
|
3.4
|
73.5
|
1.0
|
N
|
A:ASP415
|
3.5
|
66.8
|
1.0
|
C
|
A:VAL419
|
3.5
|
0.0
|
1.0
|
O
|
A:ALA329
|
3.5
|
93.5
|
1.0
|
CB
|
A:ARG293
|
3.5
|
0.0
|
1.0
|
CG
|
A:GLU232
|
3.5
|
49.7
|
1.0
|
N
|
A:GLU265
|
3.6
|
67.9
|
1.0
|
CB
|
A:PRO359
|
3.6
|
92.7
|
1.0
|
OD1
|
A:ASP289
|
3.6
|
99.7
|
1.0
|
O
|
A:ASN327
|
3.6
|
0.0
|
1.0
|
N
|
A:LEU292
|
3.7
|
96.5
|
1.0
|
CB
|
A:ALA329
|
3.7
|
93.5
|
1.0
|
CG
|
A:PHE370
|
3.7
|
98.2
|
1.0
|
CB
|
A:SER368
|
3.8
|
0.0
|
1.0
|
CE2
|
A:PHE268
|
3.8
|
68.6
|
1.0
|
N
|
A:ARG293
|
3.9
|
59.5
|
1.0
|
CA
|
A:ASN327
|
3.9
|
0.0
|
1.0
|
O
|
A:SER368
|
3.9
|
99.5
|
1.0
|
C
|
A:GLU265
|
3.9
|
67.9
|
1.0
|
CG
|
A:ASP358
|
4.0
|
96.2
|
1.0
|
O
|
A:VAL326
|
4.0
|
0.0
|
1.0
|
CG
|
A:LEU292
|
4.0
|
73.5
|
1.0
|
CD
|
A:PRO359
|
4.0
|
92.7
|
1.0
|
CA
|
A:VAL263
|
4.0
|
65.6
|
1.0
|
CD1
|
A:LEU292
|
4.0
|
73.5
|
1.0
|
C
|
A:VAL412
|
4.0
|
0.0
|
1.0
|
CA
|
A:LEU292
|
4.1
|
96.5
|
1.0
|
O
|
A:PHE290
|
4.1
|
52.9
|
1.0
|
NE
|
A:ARG293
|
4.1
|
0.0
|
1.0
|
CE1
|
A:PHE268
|
4.2
|
68.6
|
1.0
|
N
|
A:ASP360
|
4.2
|
65.5
|
1.0
|
OD1
|
A:ASP358
|
4.2
|
96.2
|
1.0
|
N
|
A:THR421
|
4.2
|
0.0
|
1.0
|
CE1
|
A:TYR296
|
4.2
|
99.4
|
1.0
|
CD2
|
A:TYR296
|
4.2
|
99.4
|
1.0
|
CD
|
A:ARG293
|
4.2
|
0.0
|
1.0
|
O
|
A:VAL412
|
4.2
|
0.0
|
1.0
|
N
|
A:SER368
|
4.3
|
99.5
|
1.0
|
CA
|
A:GLU291
|
4.3
|
99.8
|
1.0
|
CE
|
A:LYS383
|
4.3
|
100.0
|
1.0
|
CB
|
A:GLU291
|
4.3
|
52.9
|
1.0
|
CG
|
A:ASN327
|
4.3
|
0.0
|
1.0
|
CG
|
A:GLU291
|
4.4
|
52.9
|
1.0
|
NH2
|
A:ARG262
|
4.4
|
61.2
|
1.0
|
C
|
A:LEU292
|
4.4
|
96.5
|
1.0
|
O
|
A:VAL263
|
4.4
|
65.6
|
1.0
|
C
|
A:LEU288
|
4.4
|
0.0
|
1.0
|
C
|
A:VAL263
|
4.4
|
65.6
|
1.0
|
CA
|
A:ARG293
|
4.4
|
59.5
|
1.0
|
CD
|
A:LYS383
|
4.5
|
100.0
|
1.0
|
N
|
A:GLY266
|
4.5
|
19.2
|
1.0
|
CA
|
A:PRO330
|
4.5
|
43.9
|
1.0
|
O
|
A:GLU265
|
4.5
|
67.9
|
1.0
|
CB
|
A:PRO330
|
4.5
|
43.9
|
1.0
|
CB
|
A:LEU367
|
4.6
|
55.1
|
1.0
|
CA
|
A:SER368
|
4.6
|
99.5
|
1.0
|
C
|
A:GLU291
|
4.6
|
99.8
|
1.0
|
CB
|
A:ASP360
|
4.6
|
90.8
|
1.0
|
CA
|
A:ASP415
|
4.6
|
66.8
|
1.0
|
C
|
A:SER368
|
4.6
|
99.5
|
1.0
|
O
|
A:ARG293
|
4.6
|
59.5
|
1.0
|
CA
|
A:VAL419
|
4.7
|
0.0
|
1.0
|
C
|
A:ASN264
|
4.7
|
46.2
|
1.0
|
OE1
|
A:GLN365
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP415
|
4.8
|
100.0
|
1.0
|
CA
|
A:PRO359
|
4.8
|
92.7
|
1.0
|
CB
|
A:ASN327
|
4.8
|
0.0
|
1.0
|
N
|
A:VAL263
|
4.8
|
65.6
|
1.0
|
CA
|
A:ASP360
|
4.9
|
65.5
|
1.0
|
C
|
A:VAL326
|
4.9
|
0.0
|
1.0
|
N
|
A:ASN327
|
4.9
|
0.0
|
1.0
|
CA
|
A:LEU367
|
4.9
|
89.4
|
1.0
|
NE2
|
A:GLN365
|
4.9
|
0.0
|
1.0
|
CB
|
A:GLU232
|
4.9
|
49.7
|
1.0
|
CB
|
A:LEU288
|
4.9
|
56.4
|
1.0
|
OD2
|
A:ASP325
|
4.9
|
64.5
|
1.0
|
N
|
A:PRO359
|
5.0
|
92.7
|
1.0
|
C
|
A:PRO359
|
5.0
|
92.7
|
1.0
|
|
Calcium binding site 8 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 8 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca912
b:90.9
occ:1.00
|
CD2
|
A:PHE290
|
0.8
|
99.0
|
1.0
|
OD1
|
A:ASP360
|
0.8
|
90.8
|
1.0
|
CG
|
A:ASP414
|
0.9
|
82.2
|
1.0
|
OD2
|
A:ASP360
|
0.9
|
90.8
|
1.0
|
OD1
|
A:ASP414
|
0.9
|
82.2
|
1.0
|
N
|
A:GLU291
|
0.9
|
99.8
|
1.0
|
CA
|
A:ASP414
|
0.9
|
82.6
|
1.0
|
OE2
|
A:GLU291
|
0.9
|
52.9
|
1.0
|
CG
|
A:ASP360
|
1.0
|
90.8
|
1.0
|
CD
|
A:GLU291
|
1.0
|
52.9
|
1.0
|
OE1
|
A:GLU291
|
1.1
|
52.9
|
1.0
|
CB
|
A:PHE290
|
1.1
|
99.0
|
1.0
|
C
|
A:ASP414
|
1.1
|
82.6
|
1.0
|
C
|
A:PHE290
|
1.1
|
52.9
|
1.0
|
CB
|
A:ARG293
|
1.2
|
0.0
|
1.0
|
CA
|
A:PHE290
|
1.3
|
52.9
|
1.0
|
N
|
A:ASP415
|
1.3
|
66.8
|
1.0
|
CE2
|
A:PHE290
|
1.3
|
99.0
|
1.0
|
CG
|
A:PHE290
|
1.4
|
99.0
|
1.0
|
NH2
|
A:ARG293
|
1.5
|
0.0
|
1.0
|
CB
|
A:ASP414
|
1.5
|
82.2
|
1.0
|
OD1
|
A:ASN327
|
1.5
|
0.0
|
1.0
|
CG
|
A:ARG293
|
1.5
|
0.0
|
1.0
|
CA
|
A:CA915
|
1.6
|
70.2
|
1.0
|
OG
|
A:SER368
|
1.7
|
0.0
|
1.0
|
OD2
|
A:ASP414
|
1.7
|
82.2
|
1.0
|
CZ
|
A:ARG293
|
1.7
|
0.0
|
1.0
|
N
|
A:ARG293
|
1.7
|
59.5
|
1.0
|
O
|
A:THR413
|
1.9
|
99.8
|
1.0
|
N
|
A:ASP414
|
2.1
|
82.6
|
1.0
|
NH1
|
A:ARG293
|
2.1
|
0.0
|
1.0
|
CA
|
A:ARG293
|
2.2
|
59.5
|
1.0
|
N
|
A:LEU292
|
2.2
|
96.5
|
1.0
|
O
|
A:GLU328
|
2.2
|
0.0
|
1.0
|
CG2
|
A:THR413
|
2.2
|
0.0
|
1.0
|
C
|
A:THR413
|
2.2
|
99.8
|
1.0
|
CA
|
A:GLU291
|
2.2
|
99.8
|
1.0
|
CA
|
A:CA911
|
2.3
|
37.4
|
1.0
|
O
|
A:PHE290
|
2.3
|
52.9
|
1.0
|
O
|
A:ASP414
|
2.3
|
82.6
|
1.0
|
NE
|
A:ARG293
|
2.4
|
0.0
|
1.0
|
CZ
|
A:PHE290
|
2.4
|
99.0
|
1.0
|
OE1
|
A:GLU328
|
2.4
|
0.0
|
1.0
|
CB
|
A:ASP360
|
2.4
|
90.8
|
1.0
|
CG
|
A:GLU291
|
2.4
|
52.9
|
1.0
|
N
|
A:GLU328
|
2.4
|
0.0
|
1.0
|
OE2
|
A:GLU265
|
2.5
|
85.5
|
1.0
|
OE1
|
A:GLN365
|
2.6
|
0.0
|
1.0
|
CB
|
A:GLU291
|
2.6
|
52.9
|
1.0
|
N
|
A:PHE290
|
2.6
|
52.9
|
1.0
|
OD2
|
A:ASP358
|
2.6
|
96.2
|
1.0
|
CD
|
A:ARG293
|
2.6
|
0.0
|
1.0
|
OH
|
A:TYR296
|
2.7
|
99.4
|
1.0
|
CA
|
A:ASP415
|
2.7
|
66.8
|
1.0
|
CG
|
A:ASN327
|
2.7
|
0.0
|
1.0
|
CB
|
A:ASP415
|
2.7
|
100.0
|
1.0
|
O
|
A:ASP289
|
2.7
|
0.0
|
1.0
|
CD1
|
A:PHE290
|
2.8
|
99.0
|
1.0
|
O
|
A:ARG293
|
2.8
|
59.5
|
1.0
|
C
|
A:LEU292
|
2.8
|
96.5
|
1.0
|
CZ
|
A:PHE370
|
2.8
|
98.2
|
1.0
|
C
|
A:GLU291
|
2.9
|
99.8
|
1.0
|
C
|
A:ARG293
|
2.9
|
59.5
|
1.0
|
CB
|
A:SER368
|
2.9
|
0.0
|
1.0
|
OE1
|
A:GLU232
|
2.9
|
49.7
|
1.0
|
N
|
A:ASP360
|
3.0
|
65.5
|
1.0
|
CA
|
A:LEU292
|
3.0
|
96.5
|
1.0
|
CA
|
A:ASP360
|
3.0
|
65.5
|
1.0
|
NE2
|
A:GLN365
|
3.0
|
0.0
|
1.0
|
OD1
|
A:ASP358
|
3.0
|
96.2
|
1.0
|
CZ
|
A:TYR296
|
3.1
|
99.4
|
1.0
|
CE1
|
A:PHE290
|
3.1
|
99.0
|
1.0
|
C
|
A:ASN327
|
3.1
|
0.0
|
1.0
|
C
|
A:GLU328
|
3.1
|
0.0
|
1.0
|
CD
|
A:GLU265
|
3.1
|
85.5
|
1.0
|
CA
|
A:ASN327
|
3.1
|
0.0
|
1.0
|
C
|
A:ASP289
|
3.1
|
0.0
|
1.0
|
CB
|
A:LEU292
|
3.2
|
73.5
|
1.0
|
OG1
|
A:THR413
|
3.2
|
0.0
|
1.0
|
CE2
|
A:TYR296
|
3.2
|
99.4
|
1.0
|
CB
|
A:THR413
|
3.2
|
0.0
|
1.0
|
CD
|
A:GLN365
|
3.3
|
0.0
|
1.0
|
CE1
|
A:PHE370
|
3.3
|
98.2
|
1.0
|
CG
|
A:ASP358
|
3.3
|
96.2
|
1.0
|
CA
|
A:GLU328
|
3.3
|
0.0
|
1.0
|
CD
|
A:GLU328
|
3.3
|
0.0
|
1.0
|
O
|
A:VAL326
|
3.4
|
0.0
|
1.0
|
O
|
A:ASP415
|
3.4
|
66.8
|
1.0
|
ND2
|
A:ASN327
|
3.4
|
0.0
|
1.0
|
CD
|
A:GLU232
|
3.5
|
49.7
|
1.0
|
N
|
A:SER368
|
3.5
|
99.5
|
1.0
|
CA
|
A:THR413
|
3.5
|
99.8
|
1.0
|
OD2
|
A:ASP325
|
3.5
|
64.5
|
1.0
|
CA
|
A:LEU367
|
3.5
|
89.4
|
1.0
|
CB
|
A:ASN327
|
3.5
|
0.0
|
1.0
|
O
|
A:LYS366
|
3.6
|
87.4
|
1.0
|
CG
|
A:PRO359
|
3.6
|
92.7
|
1.0
|
C
|
A:ASP415
|
3.6
|
66.8
|
1.0
|
CG
|
A:GLU265
|
3.7
|
85.5
|
1.0
|
OE2
|
A:GLU328
|
3.7
|
0.0
|
1.0
|
O
|
A:GLN295
|
3.7
|
91.9
|
1.0
|
OE2
|
A:GLU232
|
3.7
|
49.7
|
1.0
|
CE1
|
A:TYR296
|
3.7
|
99.4
|
1.0
|
OE1
|
A:GLU265
|
3.7
|
85.5
|
1.0
|
O
|
A:LEU292
|
3.7
|
96.5
|
1.0
|
CB
|
A:LEU367
|
3.8
|
55.1
|
1.0
|
O
|
A:VAL419
|
3.8
|
0.0
|
1.0
|
CE2
|
A:PHE370
|
3.9
|
98.2
|
1.0
|
CG2
|
A:VAL263
|
3.9
|
60.8
|
1.0
|
CD2
|
A:TYR296
|
3.9
|
99.4
|
1.0
|
CA
|
A:SER368
|
4.0
|
99.5
|
1.0
|
O
|
A:ASN327
|
4.0
|
0.0
|
1.0
|
CB
|
A:GLU265
|
4.0
|
85.5
|
1.0
|
CG
|
A:ASP415
|
4.0
|
100.0
|
1.0
|
N
|
A:LYS294
|
4.1
|
0.0
|
1.0
|
CG
|
A:PRO330
|
4.1
|
43.9
|
1.0
|
C
|
A:LEU367
|
4.1
|
89.4
|
1.0
|
CB
|
A:PRO359
|
4.1
|
92.7
|
1.0
|
CB
|
A:GLU328
|
4.1
|
0.0
|
1.0
|
O
|
A:GLU291
|
4.1
|
99.8
|
1.0
|
C
|
A:PRO359
|
4.1
|
92.7
|
1.0
|
CG1
|
A:VAL263
|
4.1
|
60.8
|
1.0
|
NZ
|
A:LYS383
|
4.2
|
100.0
|
1.0
|
CG
|
A:LEU292
|
4.2
|
73.5
|
1.0
|
CB
|
A:VAL263
|
4.2
|
60.8
|
1.0
|
OD1
|
A:ASP325
|
4.3
|
64.5
|
1.0
|
OD2
|
A:ASP415
|
4.3
|
100.0
|
1.0
|
N
|
A:ALA329
|
4.3
|
93.5
|
1.0
|
OD2
|
A:ASP289
|
4.3
|
99.7
|
1.0
|
CD
|
A:PRO330
|
4.3
|
43.9
|
1.0
|
CG
|
A:ASP325
|
4.4
|
64.5
|
1.0
|
N
|
A:ASN327
|
4.4
|
0.0
|
1.0
|
C
|
A:LYS366
|
4.4
|
87.4
|
1.0
|
C
|
A:VAL419
|
4.4
|
0.0
|
1.0
|
NH2
|
A:ARG262
|
4.4
|
61.2
|
1.0
|
CG
|
A:GLU328
|
4.4
|
0.0
|
1.0
|
CG
|
A:GLU232
|
4.4
|
49.7
|
1.0
|
C
|
A:VAL326
|
4.4
|
0.0
|
1.0
|
N
|
A:LEU367
|
4.4
|
89.4
|
1.0
|
C
|
A:ASP360
|
4.5
|
65.5
|
1.0
|
N
|
A:THR413
|
4.5
|
99.8
|
1.0
|
CA
|
A:ASP289
|
4.5
|
0.0
|
1.0
|
CA
|
A:ALA329
|
4.6
|
93.5
|
1.0
|
CD
|
A:PRO359
|
4.6
|
92.7
|
1.0
|
CD
|
A:LYS383
|
4.6
|
100.0
|
1.0
|
CA
|
A:PRO359
|
4.6
|
92.7
|
1.0
|
O
|
A:SER368
|
4.6
|
99.5
|
1.0
|
CD1
|
A:TYR296
|
4.6
|
99.4
|
1.0
|
CD1
|
A:PHE370
|
4.7
|
98.2
|
1.0
|
CG
|
A:GLN365
|
4.7
|
0.0
|
1.0
|
N
|
A:GLY420
|
4.7
|
93.4
|
1.0
|
CG
|
A:TYR296
|
4.7
|
99.4
|
1.0
|
CB
|
A:ASP358
|
4.8
|
96.2
|
1.0
|
O
|
A:VAL297
|
4.8
|
58.8
|
1.0
|
C
|
A:SER368
|
4.8
|
99.5
|
1.0
|
CA
|
A:GLY420
|
4.8
|
93.4
|
1.0
|
C
|
A:ALA329
|
4.8
|
93.5
|
1.0
|
N
|
A:PRO330
|
4.9
|
43.9
|
1.0
|
N
|
A:GLY416
|
4.9
|
99.5
|
1.0
|
C
|
A:GLN295
|
4.9
|
91.9
|
1.0
|
CG
|
A:ASP289
|
4.9
|
99.7
|
1.0
|
N
|
A:PRO359
|
4.9
|
92.7
|
1.0
|
N
|
A:ASP289
|
4.9
|
0.0
|
1.0
|
CB
|
A:GLN365
|
5.0
|
0.0
|
1.0
|
O
|
A:ASP360
|
5.0
|
65.5
|
1.0
|
CE
|
A:LYS383
|
5.0
|
100.0
|
1.0
|
|
Calcium binding site 9 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 9 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca913
b:34.6
occ:1.00
|
CB
|
A:ARG396
|
0.4
|
100.0
|
1.0
|
ND2
|
A:ASN404
|
0.8
|
100.0
|
1.0
|
CG
|
A:ARG396
|
0.9
|
100.0
|
1.0
|
OE1
|
A:GLU397
|
1.3
|
75.5
|
1.0
|
CD
|
A:ARG396
|
1.4
|
100.0
|
1.0
|
CG
|
A:ASN404
|
1.6
|
100.0
|
1.0
|
CA
|
A:ARG396
|
1.6
|
89.7
|
1.0
|
OE1
|
A:GLU343
|
1.8
|
72.9
|
1.0
|
CE1
|
A:HIS429
|
1.8
|
69.8
|
1.0
|
OD2
|
A:ASP395
|
1.9
|
88.0
|
1.0
|
N
|
A:ARG396
|
2.0
|
89.7
|
1.0
|
OD1
|
A:ASN404
|
2.0
|
100.0
|
1.0
|
ND1
|
A:HIS429
|
2.0
|
69.8
|
1.0
|
O
|
A:VAL430
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS429
|
2.1
|
69.8
|
1.0
|
N
|
A:GLU397
|
2.2
|
0.0
|
1.0
|
OD1
|
A:ASP435
|
2.3
|
64.9
|
1.0
|
CD2
|
A:HIS429
|
2.3
|
69.8
|
1.0
|
CG
|
A:ASP395
|
2.4
|
88.0
|
1.0
|
C
|
A:ARG396
|
2.4
|
89.7
|
1.0
|
OD1
|
A:ASP395
|
2.4
|
88.0
|
1.0
|
CG
|
A:ASP435
|
2.5
|
64.9
|
1.0
|
CD
|
A:GLU397
|
2.5
|
75.5
|
1.0
|
OE2
|
A:GLU343
|
2.6
|
72.9
|
1.0
|
CG
|
A:HIS429
|
2.7
|
69.8
|
1.0
|
OD2
|
A:ASP435
|
2.7
|
64.9
|
1.0
|
CD
|
A:GLU343
|
2.7
|
72.9
|
1.0
|
C
|
A:VAL430
|
2.7
|
0.0
|
1.0
|
NE
|
A:ARG396
|
2.7
|
100.0
|
1.0
|
CB
|
A:ASN404
|
2.8
|
100.0
|
1.0
|
O
|
A:ASN404
|
2.8
|
0.0
|
1.0
|
C
|
A:ASP395
|
2.9
|
76.5
|
1.0
|
CA
|
A:CA916
|
2.9
|
85.4
|
1.0
|
O
|
A:LEU431
|
2.9
|
0.0
|
1.0
|
CB
|
A:ASP435
|
3.1
|
64.9
|
1.0
|
N
|
A:LEU431
|
3.2
|
0.0
|
1.0
|
CB
|
A:GLU397
|
3.2
|
75.5
|
1.0
|
CB
|
A:VAL430
|
3.3
|
99.6
|
1.0
|
CA
|
A:ASP395
|
3.3
|
76.5
|
1.0
|
O
|
A:ARG396
|
3.3
|
89.7
|
1.0
|
OE2
|
A:GLU397
|
3.3
|
75.5
|
1.0
|
CG1
|
A:VAL430
|
3.3
|
99.6
|
1.0
|
CG
|
A:GLU397
|
3.3
|
75.5
|
1.0
|
CA
|
A:GLU397
|
3.4
|
0.0
|
1.0
|
C
|
A:LEU431
|
3.4
|
0.0
|
1.0
|
CA
|
A:VAL430
|
3.4
|
0.0
|
1.0
|
CB
|
A:ASP395
|
3.5
|
88.0
|
1.0
|
N
|
A:VAL430
|
3.5
|
0.0
|
1.0
|
CA
|
A:LEU431
|
3.5
|
0.0
|
1.0
|
C
|
A:ASN404
|
3.6
|
0.0
|
1.0
|
CZ
|
A:ARG396
|
3.6
|
100.0
|
1.0
|
NH1
|
A:ARG396
|
3.7
|
100.0
|
1.0
|
O
|
A:ASP395
|
3.7
|
76.5
|
1.0
|
CA
|
A:ASN404
|
3.8
|
0.0
|
1.0
|
CB
|
A:HIS429
|
3.8
|
69.8
|
1.0
|
CG
|
A:GLU343
|
3.9
|
72.9
|
1.0
|
CA
|
A:HIS429
|
4.1
|
0.0
|
1.0
|
OD1
|
A:ASP432
|
4.1
|
99.7
|
1.0
|
C
|
A:HIS429
|
4.1
|
0.0
|
1.0
|
N
|
A:ASP432
|
4.2
|
0.0
|
1.0
|
CB
|
A:GLU343
|
4.4
|
72.9
|
1.0
|
CG2
|
A:VAL433
|
4.5
|
38.3
|
1.0
|
CA
|
A:ASP432
|
4.5
|
0.0
|
1.0
|
CG2
|
A:VAL430
|
4.6
|
99.6
|
1.0
|
CA
|
A:ASP435
|
4.6
|
99.6
|
1.0
|
N
|
A:ASP395
|
4.6
|
76.5
|
1.0
|
C
|
A:GLU397
|
4.7
|
0.0
|
1.0
|
OD1
|
A:ASN436
|
4.7
|
72.3
|
1.0
|
ND2
|
A:ASN436
|
4.8
|
72.3
|
1.0
|
NH2
|
A:ARG396
|
4.8
|
100.0
|
1.0
|
N
|
A:THR405
|
4.9
|
0.0
|
1.0
|
CB
|
A:ASP432
|
4.9
|
99.7
|
1.0
|
O
|
A:HIS429
|
5.0
|
0.0
|
1.0
|
CB
|
A:LEU431
|
5.0
|
65.8
|
1.0
|
|
Calcium binding site 10 out
of 48 in 1q55
Go back to
Calcium Binding Sites List in 1q55
Calcium binding site 10 out
of 48 in the W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of W-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca914
b:69.9
occ:1.00
|
CG
|
A:PRO520
|
0.3
|
95.2
|
1.0
|
CG
|
A:GLN521
|
0.6
|
0.0
|
1.0
|
C
|
A:ILE464
|
0.6
|
88.0
|
1.0
|
O
|
A:ILE464
|
0.7
|
88.0
|
1.0
|
CD
|
A:GLN521
|
1.0
|
0.0
|
1.0
|
N
|
A:PRO465
|
1.3
|
91.0
|
1.0
|
CD
|
A:PRO520
|
1.4
|
95.2
|
1.0
|
NE2
|
A:GLN521
|
1.5
|
0.0
|
1.0
|
CB
|
A:GLN521
|
1.6
|
0.0
|
1.0
|
CA
|
A:GLY437
|
1.6
|
93.1
|
1.0
|
O
|
A:ASN436
|
1.7
|
56.8
|
1.0
|
CB
|
A:PRO520
|
1.7
|
95.2
|
1.0
|
OD1
|
A:ASN434
|
1.9
|
68.5
|
1.0
|
CB
|
A:ASP463
|
1.9
|
90.9
|
1.0
|
O
|
A:PRO465
|
2.0
|
91.0
|
1.0
|
CB
|
A:ASN467
|
2.0
|
73.4
|
1.0
|
CA
|
A:ILE464
|
2.0
|
88.0
|
1.0
|
CG1
|
A:ILE464
|
2.1
|
100.0
|
1.0
|
CA
|
A:PRO520
|
2.1
|
95.2
|
1.0
|
OE1
|
A:GLN521
|
2.1
|
0.0
|
1.0
|
CA
|
A:PRO465
|
2.1
|
91.0
|
1.0
|
O
|
A:ASN467
|
2.2
|
44.5
|
1.0
|
OD2
|
A:ASP515
|
2.3
|
0.0
|
1.0
|
N
|
A:PRO520
|
2.3
|
95.2
|
1.0
|
N
|
A:GLY437
|
2.3
|
93.1
|
1.0
|
N
|
A:GLN521
|
2.3
|
0.0
|
1.0
|
N
|
A:ILE464
|
2.3
|
88.0
|
1.0
|
OD1
|
A:ASP463
|
2.4
|
90.9
|
1.0
|
C
|
A:PRO465
|
2.4
|
91.0
|
1.0
|
C
|
A:ASN436
|
2.4
|
56.8
|
1.0
|
OD1
|
A:ASP461
|
2.5
|
0.0
|
1.0
|
CA
|
A:GLN521
|
2.5
|
0.0
|
1.0
|
CD1
|
A:ILE464
|
2.5
|
100.0
|
1.0
|
CB
|
A:ILE464
|
2.6
|
100.0
|
1.0
|
C
|
A:ASN467
|
2.6
|
44.5
|
1.0
|
CG
|
A:ASP463
|
2.7
|
90.9
|
1.0
|
CD
|
A:PRO465
|
2.7
|
91.0
|
1.0
|
CA
|
A:ASN467
|
2.8
|
44.5
|
1.0
|
C
|
A:ASP463
|
2.9
|
0.0
|
1.0
|
CG2
|
A:ILE464
|
3.0
|
100.0
|
1.0
|
C
|
A:GLY437
|
3.0
|
93.1
|
1.0
|
CG2
|
A:THR468
|
3.0
|
0.0
|
1.0
|
CG
|
A:ASN434
|
3.0
|
68.5
|
1.0
|
CG
|
A:ASP461
|
3.1
|
0.0
|
1.0
|
CB
|
A:PRO465
|
3.1
|
91.0
|
1.0
|
CA
|
A:ASP463
|
3.2
|
0.0
|
1.0
|
C
|
A:PRO520
|
3.2
|
95.2
|
1.0
|
ND2
|
A:ASN434
|
3.2
|
68.5
|
1.0
|
C
|
A:ASN519
|
3.3
|
0.0
|
1.0
|
OD2
|
A:ASP461
|
3.3
|
0.0
|
1.0
|
CG
|
A:ASN467
|
3.3
|
73.4
|
1.0
|
CD
|
A:PRO438
|
3.3
|
75.9
|
1.0
|
CG
|
A:ASP515
|
3.4
|
0.0
|
1.0
|
N
|
A:ASN467
|
3.4
|
44.5
|
1.0
|
O
|
A:ASN519
|
3.5
|
0.0
|
1.0
|
N
|
A:THR468
|
3.5
|
0.0
|
1.0
|
O
|
A:ASP463
|
3.5
|
0.0
|
1.0
|
OD1
|
A:ASN467
|
3.5
|
73.4
|
1.0
|
O
|
A:ASN518
|
3.5
|
0.0
|
1.0
|
CB
|
A:ASN518
|
3.5
|
88.3
|
1.0
|
C
|
A:GLN521
|
3.6
|
0.0
|
1.0
|
N
|
A:PRO466
|
3.6
|
0.0
|
1.0
|
N
|
A:PRO438
|
3.6
|
75.9
|
1.0
|
O
|
A:GLN521
|
3.6
|
0.0
|
1.0
|
CG
|
A:PRO465
|
3.7
|
91.0
|
1.0
|
OD2
|
A:ASP432
|
3.8
|
99.7
|
1.0
|
OD1
|
A:ASP515
|
3.9
|
0.0
|
1.0
|
OD2
|
A:ASP463
|
3.9
|
90.9
|
1.0
|
C
|
A:ASN518
|
3.9
|
0.0
|
1.0
|
ND2
|
A:ASN518
|
3.9
|
88.3
|
1.0
|
CA
|
A:ASN436
|
3.9
|
56.8
|
1.0
|
N
|
A:ASP463
|
4.0
|
0.0
|
1.0
|
O
|
A:GLY437
|
4.0
|
93.1
|
1.0
|
CA
|
A:THR468
|
4.1
|
0.0
|
1.0
|
O
|
A:ASP435
|
4.2
|
99.6
|
1.0
|
CB
|
A:THR468
|
4.2
|
0.0
|
1.0
|
CB
|
A:ASN434
|
4.2
|
68.5
|
1.0
|
N
|
A:ASN519
|
4.2
|
0.0
|
1.0
|
CB
|
A:ASP461
|
4.2
|
0.0
|
1.0
|
CG
|
A:ASN518
|
4.2
|
88.3
|
1.0
|
CA
|
A:ASN519
|
4.2
|
0.0
|
1.0
|
CD
|
A:PRO466
|
4.3
|
0.0
|
1.0
|
C
|
A:PRO466
|
4.3
|
0.0
|
1.0
|
O
|
A:PRO520
|
4.4
|
95.2
|
1.0
|
ND2
|
A:ASN467
|
4.4
|
73.4
|
1.0
|
CA
|
A:ASN518
|
4.4
|
0.0
|
1.0
|
N
|
A:ASN436
|
4.5
|
56.8
|
1.0
|
CA
|
A:ASN434
|
4.5
|
0.0
|
1.0
|
CG
|
A:PRO438
|
4.6
|
75.9
|
1.0
|
CB
|
A:ASP515
|
4.6
|
0.0
|
1.0
|
C
|
A:ASP435
|
4.6
|
99.6
|
1.0
|
CB
|
A:ASN519
|
4.6
|
100.0
|
1.0
|
CA
|
A:PRO466
|
4.6
|
0.0
|
1.0
|
N
|
A:LEU522
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASN436
|
4.8
|
72.3
|
1.0
|
O
|
A:PRO466
|
4.8
|
0.0
|
1.0
|
C
|
A:ASN434
|
4.9
|
0.0
|
1.0
|
OG1
|
A:THR468
|
4.9
|
0.0
|
1.0
|
|
Reference:
W.He,
P.Cowin,
D.L.Stokes.
Untangling Desmosomal Knots with Electron Tomography Science V. 302 109 2003.
ISSN: ISSN 0036-8075
PubMed: 14526082
DOI: 10.1126/SCIENCE.1086957
Page generated: Thu Jul 11 13:58:47 2024
|