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Calcium in PDB 1q5a: S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Calcium atom in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography (pdb code 1q5a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 24 binding sites of Calcium where determined in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography, PDB code: 1q5a:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 24 in 1q5a

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Calcium binding site 1 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca905

b:22.4
occ:1.00
 CA A:ASP134 0.6 47.4 1.0
CG A:ASP134 0.7 51.6 1.0
CG A:ASN102 0.8 55.7 1.0
CB A:ASP134 0.9 51.6 1.0
OD1 A:ASP134 1.0 51.6 1.0
N A:ASP134 1.1 47.4 1.0
OD1 A:ASN102 1.1 55.7 1.0
ND2 A:ASN102 1.2 55.7 1.0
C A:ASP134 1.3 47.4 1.0
CB A:THR133 1.3 57.5 1.0
CG2 A:THR133 1.3 57.5 1.0
OD2 A:ASP134 1.4 51.6 1.0
O A:ASP134 1.6 47.4 1.0
CB A:ASN102 1.7 55.7 1.0
C A:THR133 2.1 87.0 1.0
O A:ASN104 2.3 47.5 1.0
O A:ASN143 2.3 41.2 1.0
OD1 A:ASP195 2.4 34.4 1.0
CA A:THR133 2.4 87.0 1.0
OG1 A:THR133 2.4 57.5 1.0
N A:GLU135 2.5 26.0 1.0
O A:ASN102 2.7 33.5 1.0
CA A:ASN102 2.7 33.5 1.0
OD2 A:ASP136 2.7 42.7 1.0
OD2 A:ASP195 2.8 34.4 1.0
CG A:ASP195 3.0 34.4 1.0
O A:THR133 3.1 87.0 1.0
C A:ASN102 3.1 33.5 1.0
C A:ASN104 3.4 47.5 1.0
C A:ASN143 3.5 41.2 1.0
CA A:GLU135 3.6 26.0 1.0
CG A:ASP136 3.7 42.7 1.0
N A:ASP136 3.7 14.1 1.0
N A:THR133 3.8 87.0 1.0
CB A:ASP136 3.8 42.7 1.0
CA A:GLY144 3.9 31.3 1.0
N A:ASN102 4.0 33.5 1.0
N A:ASP103 4.0 73.5 1.0
N A:ASN104 4.0 47.5 1.0
CD1 A:LEU201 4.1 44.2 1.0
CA A:ASN104 4.1 47.5 1.0
CB A:ASN104 4.1 79.0 1.0
CA A:ASN143 4.1 41.2 1.0
C A:GLU135 4.3 26.0 1.0
N A:GLY144 4.3 31.3 1.0
CB A:ASN143 4.4 34.4 1.0
O A:ALA132 4.4 55.7 1.0
CA A:PRO106 4.5 47.0 1.0
C A:ALA132 4.5 55.7 1.0
O A:GLY144 4.5 31.3 1.0
CB A:ASP195 4.5 34.4 1.0
CA A:ASP136 4.5 14.1 1.0
N A:ARG105 4.6 90.2 1.0
C A:GLY144 4.6 31.3 1.0
C A:ARG105 4.6 90.2 1.0
N A:PRO106 4.7 47.0 1.0
CB A:PRO106 4.7 47.0 1.0
CD1 A:LEU146 4.7 22.8 1.0
O A:ARG105 4.7 90.2 1.0
CG A:LEU201 4.7 44.2 1.0
CB A:GLU135 4.8 99.1 1.0
OD1 A:ASP136 4.9 42.7 1.0
CA A:ARG105 4.9 90.2 1.0
O A:ASP136 5.0 14.1 1.0
CA A:ASP103 5.0 73.5 1.0
CD2 A:LEU146 5.0 22.8 1.0
C A:ASP103 5.0 73.5 1.0

Calcium binding site 2 out of 24 in 1q5a

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Calcium binding site 2 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca906

b:5.0
occ:1.00
 OE1 A:GLN101 0.4 71.4 1.0
CD A:GLN101 0.9 71.4 1.0
CB A:GLN101 1.0 71.4 1.0
OE2 A:GLU69 1.1 15.8 1.0
O A:GLU135 1.4 26.0 1.0
O A:GLN101 1.5 43.4 1.0
CG A:GLN101 1.6 71.4 1.0
NE2 A:GLN101 1.8 71.4 1.0
CA A:GLN101 1.8 43.4 1.0
OD1 A:ASP136 1.9 42.7 1.0
OE1 A:GLU11 1.9 21.0 1.0
C A:GLN101 1.9 43.4 1.0
CD A:GLU69 2.2 15.8 1.0
N A:GLN101 2.2 43.4 1.0
C A:GLU135 2.4 26.0 1.0
OD2 A:ASP103 2.5 33.9 1.0
OD1 A:ASP103 2.6 33.9 1.0
OD2 A:ASP100 2.7 34.3 1.0
CG A:ASP103 2.8 33.9 1.0
CA A:ASP136 2.8 14.1 1.0
OE1 A:GLU69 2.8 15.8 1.0
CG A:GLU69 2.9 15.8 1.0
CG A:GLU135 2.9 99.1 1.0
N A:ASN102 3.0 33.5 1.0
N A:ASP136 3.0 14.1 1.0
CG A:ASP136 3.0 42.7 1.0
CB A:GLU135 3.0 99.1 1.0
OD1 A:ASP100 3.1 34.3 1.0
CD A:GLU11 3.1 21.0 1.0
CA A:GLU135 3.1 26.0 1.0
NE A:ARG68 3.2 39.4 1.0
CG A:ASP100 3.2 34.3 1.0
NH2 A:ARG68 3.3 39.4 1.0
CB A:ASP136 3.4 42.7 1.0
OE2 A:GLU11 3.5 21.0 1.0
C A:ASP100 3.5 42.9 1.0
N A:ASP103 3.5 73.5 1.0
C A:ASP136 3.6 14.1 1.0
CD A:GLU135 3.7 99.1 1.0
ND2 A:ASN104 3.8 79.0 1.0
CZ A:ARG68 3.9 39.4 1.0
CB A:ASP103 3.9 33.9 1.0
CD A:ARG68 3.9 39.4 1.0
OD2 A:ASP136 4.0 42.7 1.0
CG A:ARG68 4.0 39.4 1.0
OE2 A:GLU135 4.0 99.1 1.0
O A:GLU11 4.0 30.1 1.0
CA A:ASN102 4.0 33.5 1.0
CG A:GLU11 4.0 21.0 1.0
C A:ASN102 4.1 33.5 1.0
CA A:ASP100 4.1 42.9 1.0
N A:ASP137 4.1 49.5 1.0
O A:ASP136 4.2 14.1 1.0
CB A:ASP100 4.2 34.3 1.0
O A:ASP100 4.3 42.9 1.0
CB A:GLU69 4.3 15.8 1.0
OE1 A:GLU135 4.3 99.1 1.0
CA A:ASP103 4.4 73.5 1.0
OD1 A:ASN12 4.4 43.9 1.0
CA A:CA907 4.5 15.4 1.0
N A:GLU135 4.6 26.0 1.0
CB A:GLU11 4.6 21.0 1.0
CA A:GLU69 4.6 33.9 1.0
CB A:ASN12 4.7 43.9 1.0
O A:ASN12 4.8 34.7 1.0
CG A:ASN104 4.8 79.0 1.0
C A:GLU11 4.9 30.1 1.0
OG A:SER10 4.9 46.9 1.0
N A:GLU69 4.9 33.9 1.0
CB A:ASN104 5.0 79.0 1.0
O A:ASN102 5.0 33.5 1.0

Calcium binding site 3 out of 24 in 1q5a

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Calcium binding site 3 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca907

b:15.4
occ:1.00
 OD1 A:ASN12 0.8 43.9 1.0
CG A:ASN12 0.9 43.9 1.0
CB A:ASN12 1.4 43.9 1.0
CB A:GLU69 1.4 15.8 1.0
CG A:GLU69 1.7 15.8 1.0
OD2 A:ASP67 1.8 32.7 1.0
OE1 A:GLU69 1.8 15.8 1.0
O A:ASN12 2.0 34.7 1.0
OD1 A:ASP103 2.1 33.9 1.0
ND2 A:ASN12 2.2 43.9 1.0
CD A:GLU69 2.5 15.8 1.0
OE2 A:GLU135 2.5 99.1 1.0
CG A:ASP67 2.5 32.7 1.0
OD1 A:ASP67 2.6 32.7 1.0
CA A:ASN12 2.7 34.7 1.0
OE2 A:GLU11 2.7 21.0 1.0
OE1 A:GLU135 2.7 99.1 1.0
CG A:ASP103 2.8 33.9 1.0
C A:ASN12 2.9 34.7 1.0
CA A:GLU69 2.9 33.9 1.0
CD A:GLU135 3.0 99.1 1.0
CD A:GLU11 3.2 21.0 1.0
CB A:ASP103 3.4 33.9 1.0
CG A:GLU11 3.4 21.0 1.0
O A:GLU69 3.5 33.9 1.0
CB A:ARG14 3.5 98.9 1.0
OD2 A:ASP103 3.5 33.9 1.0
C A:GLU69 3.5 33.9 1.0
ND2 A:ASN104 3.5 79.0 1.0
N A:ASN12 3.5 34.7 1.0
O A:ARG14 3.7 49.8 1.0
N A:GLU69 3.7 33.9 1.0
OE2 A:GLU69 3.7 15.8 1.0
O A:GLU11 3.7 30.1 1.0
CB A:ASP67 3.8 32.7 1.0
OE1 A:GLU11 3.9 21.0 1.0
C A:GLU11 4.0 30.1 1.0
CG A:GLU135 4.1 99.1 1.0
CG A:ARG14 4.2 98.9 1.0
N A:GLU13 4.2 53.1 1.0
CA A:ASP67 4.2 43.9 1.0
OE1 A:GLN101 4.2 71.4 1.0
N A:ARG14 4.3 49.8 1.0
N A:GLU70 4.4 47.5 1.0
CA A:ARG14 4.4 49.8 1.0
C A:GLU13 4.4 53.1 1.0
CA A:CA906 4.5 5.0 1.0
CB A:GLU135 4.6 99.1 1.0
O A:LEU66 4.6 41.6 1.0
C A:ARG14 4.6 49.8 1.0
O A:GLU13 4.6 53.1 1.0
CA A:GLU13 4.6 53.1 1.0
CG A:ASN104 4.7 79.0 1.0
C A:ASP67 4.8 43.9 1.0
CB A:GLU11 4.8 21.0 1.0
N A:ARG68 4.8 51.6 1.0
CA A:ASP103 4.9 73.5 1.0
CD A:GLN101 4.9 71.4 1.0

Calcium binding site 4 out of 24 in 1q5a

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Calcium binding site 4 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca908

b:10.5
occ:1.00
 C A:PRO253 0.6 55.7 1.0
OE1 A:GLU182 0.7 17.1 1.0
N A:ALA254 0.7 24.4 1.0
CB A:ALA254 0.9 24.4 1.0
CA A:PRO253 0.9 55.7 1.0
N A:PRO158 1.1 43.1 1.0
CB A:ASP180 1.1 24.0 1.0
OD1 A:ASP180 1.2 24.0 1.0
CA A:ALA254 1.2 24.4 1.0
CA A:PRO158 1.3 43.1 1.0
CG A:ASP180 1.4 24.0 1.0
CG A:PRO158 1.4 43.1 1.0
CD A:GLU182 1.5 17.1 1.0
CD A:PRO158 1.5 43.1 1.0
CA A:ASP180 1.5 28.1 1.0
CB A:ASP248 1.6 28.0 1.0
O A:PRO253 1.7 55.7 1.0
C A:PRO158 1.8 43.1 1.0
C A:ASP180 1.8 28.1 1.0
OD2 A:ASP248 1.9 28.0 1.0
O A:PRO158 1.9 43.1 1.0
OD2 A:ASP213 2.0 47.1 1.0
C A:ALA254 2.0 24.4 1.0
O A:ALA214 2.0 30.5 1.0
CG A:ASP248 2.0 28.0 1.0
OE1 A:GLU119 2.0 8.7 1.0
CD2 A:PHE184 2.1 49.3 1.0
N A:PRO253 2.1 55.7 1.0
C A:GLU157 2.1 70.7 1.0
CA A:GLU157 2.1 70.7 1.0
CB A:PRO253 2.2 55.7 1.0
CE2 A:PHE184 2.2 49.3 1.0
OE2 A:GLU182 2.2 17.1 1.0
OD1 A:ASP216 2.2 10.1 1.0
OE2 A:GLU119 2.2 8.7 1.0
N A:ARG181 2.3 27.8 1.0
O A:ASP180 2.3 28.1 1.0
OD2 A:ASP180 2.3 24.0 1.0
CB A:PRO158 2.3 43.1 1.0
N A:TRP255 2.4 50.6 1.0
N A:GLU182 2.4 40.6 1.0
OE2 A:GLU157 2.5 79.2 1.0
N A:ASP180 2.5 28.1 1.0
CG A:GLU157 2.6 79.2 1.0
CA A:CA909 2.6 12.9 1.0
CD A:GLU119 2.7 8.7 1.0
O A:ALA254 2.7 24.4 1.0
CG A:GLU182 2.7 17.1 1.0
O A:THR252 2.7 38.9 1.0
CB A:ALA305 2.7 99.8 1.0
OD1 A:ASP213 2.7 47.1 1.0
CD A:GLU157 2.7 79.2 1.0
N A:ILE159 2.7 86.8 1.0
CG A:ASP213 2.7 47.1 1.0
C A:THR252 2.7 38.9 1.0
CB A:GLU157 2.8 79.2 1.0
OD1 A:ASP248 2.8 28.0 1.0
O A:GLU156 2.8 24.3 1.0
CA A:ASP248 2.9 22.1 1.0
CG A:PRO253 3.0 55.7 1.0
O A:GLU157 3.0 70.7 1.0
CZ A:PHE184 3.0 49.3 1.0
OE1 A:GLU157 3.1 79.2 1.0
C A:ARG181 3.1 27.8 1.0
CB A:GLN256 3.1 100.0 1.0
C A:ALA214 3.1 30.5 1.0
CA A:ARG181 3.2 27.8 1.0
CB A:GLU182 3.2 17.1 1.0
CG A:ASP216 3.2 10.1 1.0
CG A:PHE184 3.2 49.3 1.0
CA A:GLU182 3.3 40.6 1.0
N A:GLU157 3.4 70.7 1.0
OE2 A:GLU306 3.4 91.8 1.0
CD A:PRO253 3.4 55.7 1.0
N A:LYS183 3.4 45.1 1.0
CA A:ILE159 3.5 86.8 1.0
CB A:ARG181 3.5 47.9 1.0
N A:MET249 3.5 41.8 1.0
OD1 A:ASN215 3.5 28.6 1.0
O A:GLY178 3.6 67.1 1.0
N A:ALA214 3.6 30.5 1.0
CB A:LYS183 3.6 56.8 1.0
C A:LEU179 3.6 22.6 1.0
CG2 A:THR252 3.7 81.4 1.0
C A:GLU156 3.7 24.3 1.0
N A:GLN256 3.7 30.5 1.0
OD2 A:ASP216 3.7 10.1 1.0
C A:ASP248 3.7 22.1 1.0
CE1 A:PHE184 3.7 49.3 1.0
CA A:TRP255 3.8 50.6 1.0
CA A:ASN215 3.9 34.3 1.0
N A:PHE184 3.9 62.0 1.0
NE A:ARG181 3.9 47.9 1.0
CB A:THR252 3.9 81.4 1.0
N A:ASN215 3.9 34.3 1.0
CD1 A:PHE184 3.9 49.3 1.0
CG A:GLN256 3.9 100.0 1.0
CA A:ALA214 4.0 30.5 1.0
ND2 A:ASN217 4.0 53.4 1.0
O A:LEU179 4.0 22.6 1.0
CA A:THR252 4.0 38.9 1.0
N A:ALA305 4.0 99.8 1.0
CA A:CA910 4.0 10.5 1.0
N A:ASP248 4.0 22.1 1.0
CA A:ALA305 4.0 99.8 1.0
OE1 A:GLN256 4.1 100.0 1.0
CB A:PHE184 4.1 49.3 1.0
C A:GLU182 4.1 40.6 1.0
C A:ILE159 4.1 86.8 1.0
CA A:GLN256 4.1 30.5 1.0
CB A:ASP216 4.1 10.1 1.0
CD A:GLN256 4.1 100.0 1.0
CA A:LYS183 4.1 45.1 1.0
CG A:GLU119 4.2 8.7 1.0
CB A:ASP213 4.2 47.1 1.0
O A:ILE159 4.2 86.8 1.0
N A:ASP216 4.2 48.2 1.0
CB A:TRP255 4.3 53.1 1.0
OH A:TYR187 4.3 32.2 1.0
O A:ARG181 4.3 27.8 1.0
O A:GLN256 4.4 30.5 1.0
CD A:GLU306 4.4 91.8 1.0
CG A:ASN215 4.4 28.6 1.0
CD A:PRO160 4.4 38.1 1.0
C A:LYS183 4.4 45.1 1.0
C A:TRP255 4.5 50.6 1.0
OD1 A:ASN304 4.5 57.1 1.0
CD A:LYS183 4.5 56.8 1.0
CG A:GLU306 4.5 91.8 1.0
O A:PHE184 4.6 62.0 1.0
CG A:LYS183 4.6 56.8 1.0
C A:ASP213 4.6 43.1 1.0
CA A:PHE184 4.6 62.0 1.0
O A:MET249 4.6 41.8 1.0
CD A:ARG181 4.6 47.9 1.0
CG A:ARG181 4.6 47.9 1.0
CA A:ASP213 4.6 43.1 1.0
CA A:LEU179 4.6 22.6 1.0
CB A:GLU119 4.6 8.7 1.0
C A:ASN215 4.7 34.3 1.0
CB A:ASN215 4.7 28.6 1.0
O7 A:NAG803 4.7 63.9 0.5
NH2 A:ARG181 4.7 47.9 1.0
C A:GLN256 4.7 30.5 1.0
CA A:MET249 4.7 41.8 1.0
C A:GLY178 4.7 67.1 1.0
NE2 A:GLN256 4.8 100.0 1.0
CG A:ASN304 4.8 57.1 1.0
N A:GLU306 4.8 62.2 1.0
N A:PRO160 4.8 38.1 1.0
CB A:ALA214 4.8 30.5 1.0
CZ A:ARG181 4.9 47.9 1.0
CB A:ILE159 4.9 54.5 1.0
O A:ASP248 4.9 22.1 1.0
CB A:ASN304 4.9 57.1 1.0
OD1 A:ASP246 4.9 13.3 1.0
C A:ALA305 4.9 99.8 1.0
CA A:ASP216 4.9 48.2 1.0
C A:PHE184 5.0 62.0 1.0
N A:ASN217 5.0 65.3 1.0

Calcium binding site 5 out of 24 in 1q5a

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Calcium binding site 5 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca909

b:12.9
occ:1.00
 O A:PRO253 1.0 55.7 1.0
O A:PRO158 1.0 43.1 1.0
OD1 A:ASN215 1.2 28.6 1.0
CB A:ALA305 1.2 99.8 1.0
CG A:ASP216 1.3 10.1 1.0
OD1 A:ASP216 1.4 10.1 1.0
CB A:PRO158 1.4 43.1 1.0
CA A:ALA254 1.6 24.4 1.0
OE2 A:GLU182 1.6 17.1 1.0
CA A:ALA305 1.6 99.8 1.0
CB A:ASP180 1.7 24.0 1.0
N A:ALA305 1.7 99.8 1.0
CA A:PRO158 1.7 43.1 1.0
CB A:ASP216 1.7 10.1 1.0
N A:ASP216 1.7 48.2 1.0
OD1 A:ASP248 1.7 28.0 1.0
CG A:ASP180 1.7 24.0 1.0
C A:PRO158 1.9 43.1 1.0
O A:ALA214 1.9 30.5 1.0
OD1 A:ASP180 1.9 24.0 1.0
OD2 A:ASP248 1.9 28.0 1.0
CG A:PRO158 1.9 43.1 1.0
CB A:ALA254 1.9 24.4 1.0
CG A:ASP248 2.0 28.0 1.0
OD2 A:ASP216 2.0 10.1 1.0
CA A:ASN215 2.1 34.3 1.0
CG A:ASN215 2.1 28.6 1.0
C A:PRO253 2.2 55.7 1.0
OD2 A:ASP180 2.3 24.0 1.0
N A:ALA254 2.4 24.4 1.0
CD A:GLU182 2.4 17.1 1.0
CA A:ASP216 2.4 48.2 1.0
C A:ASN215 2.5 34.3 1.0
OE1 A:GLU119 2.5 8.7 1.0
CA A:CA908 2.6 10.5 1.0
C A:ALA214 2.6 30.5 1.0
OD1 A:ASN304 2.6 57.1 1.0
C A:ALA254 2.6 24.4 1.0
CA A:CA910 2.6 10.5 1.0
CB A:ASN304 2.6 57.1 1.0
OE1 A:GLU182 2.7 17.1 1.0
N A:ASN215 2.7 34.3 1.0
CB A:ASN215 2.8 28.6 1.0
N A:GLU306 2.8 62.2 1.0
O A:GLY178 2.8 67.1 1.0
ND2 A:ASN217 2.9 53.4 1.0
O A:ALA254 2.9 24.4 1.0
CA A:ASP180 2.9 28.1 1.0
C A:ALA305 3.0 99.8 1.0
CG A:ASN304 3.0 57.1 1.0
C A:ASN304 3.0 49.5 1.0
N A:ASN217 3.0 65.3 1.0
ND2 A:ASN215 3.0 28.6 1.0
N A:ILE159 3.1 86.8 1.0
CB A:ASP248 3.1 28.0 1.0
N A:PRO158 3.1 43.1 1.0
CD A:PRO158 3.2 43.1 1.0
OE2 A:GLU119 3.2 8.7 1.0
C A:ASP216 3.2 48.2 1.0
CA A:PRO253 3.3 55.7 1.0
CD A:GLU119 3.3 8.7 1.0
CG A:GLU306 3.4 91.8 1.0
O A:ASN215 3.4 34.3 1.0
CA A:ASN304 3.4 49.5 1.0
OE2 A:GLU157 3.5 79.2 1.0
N A:TRP255 3.5 50.6 1.0
N A:ASP180 3.6 28.1 1.0
CB A:PRO253 3.6 55.7 1.0
OE2 A:GLU306 3.6 91.8 1.0
O A:GLN256 3.7 30.5 1.0
O A:LEU179 3.7 22.6 1.0
CA A:ILE159 3.7 86.8 1.0
CG2 A:ILE159 3.7 54.5 1.0
CE2 A:PHE184 3.8 49.3 1.0
O A:ALA305 3.8 99.8 1.0
O A:ASN304 3.9 49.5 1.0
C A:LEU179 3.9 22.6 1.0
CG A:GLU182 3.9 17.1 1.0
C A:GLY178 3.9 67.1 1.0
O A:GLU306 3.9 62.2 1.0
OE1 A:GLN256 3.9 100.0 1.0
C A:ASP180 3.9 28.1 1.0
O A:ASN217 4.0 65.3 1.0
CD A:GLU306 4.0 91.8 1.0
ND2 A:ASN304 4.0 57.1 1.0
CG2 A:VAL258 4.0 48.4 1.0
OD2 A:ASP213 4.0 47.1 1.0
CA A:ALA214 4.1 30.5 1.0
CG A:ASN217 4.1 53.4 1.0
CA A:GLU306 4.1 62.2 1.0
CA A:ASN217 4.1 65.3 1.0
CB A:GLU306 4.2 91.8 1.0
CD A:GLU157 4.2 79.2 1.0
CB A:GLN256 4.3 100.0 1.0
C A:GLU157 4.3 70.7 1.0
N A:ARG181 4.3 27.8 1.0
CD2 A:PHE184 4.3 49.3 1.0
CB A:ALA214 4.3 30.5 1.0
CA A:ASP248 4.4 22.1 1.0
N A:ALA214 4.4 30.5 1.0
CB A:ILE159 4.4 54.5 1.0
N A:GLN256 4.4 30.5 1.0
O3 A:NAG803 4.4 63.9 0.5
CG A:GLU157 4.4 79.2 1.0
O A:ASP216 4.4 48.2 1.0
CB A:GLU182 4.5 17.1 1.0
CB A:ASN217 4.5 53.4 1.0
N A:PRO253 4.5 55.7 1.0
CA A:GLU157 4.5 70.7 1.0
CG A:GLU119 4.5 8.7 1.0
CA A:GLY178 4.6 67.1 1.0
O A:ASP180 4.6 28.1 1.0
OD1 A:ASP246 4.6 13.3 1.0
C A:GLN256 4.6 30.5 1.0
CD A:GLN256 4.6 100.0 1.0
OD2 A:ASP246 4.6 13.3 1.0
CD A:LYS183 4.6 56.8 1.0
C A:GLU306 4.6 62.2 1.0
N A:GLU182 4.6 40.6 1.0
CZ A:PHE184 4.7 49.3 1.0
C A:ASN217 4.7 65.3 1.0
CA A:TRP255 4.8 50.6 1.0
N A:LEU179 4.8 22.6 1.0
N A:ASN304 4.8 49.5 1.0
CA A:GLN256 4.8 30.5 1.0
O A:THR252 4.9 38.9 1.0
CA A:LEU179 4.9 22.6 1.0
N A:ASP248 4.9 22.1 1.0
CB A:LYS183 4.9 56.8 1.0
O7 A:NAG803 4.9 63.9 0.5
CG A:ASP213 4.9 47.1 1.0
CG A:PRO253 4.9 55.7 1.0
OD1 A:ASP213 5.0 47.1 1.0
C A:ILE159 5.0 86.8 1.0
CB A:GLU157 5.0 79.2 1.0

Calcium binding site 6 out of 24 in 1q5a

Go back to Calcium Binding Sites List in 1q5a
Calcium binding site 6 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca910

b:10.5
occ:1.00
 OD1 A:ASN304 0.8 57.1 1.0
ND2 A:ASN217 0.8 53.4 1.0
CG A:ASN304 1.0 57.1 1.0
OD1 A:ASP248 1.2 28.0 1.0
N A:ASN217 1.4 65.3 1.0
ND2 A:ASN304 1.4 57.1 1.0
O A:GLN256 1.6 30.5 1.0
CA A:ASN304 1.7 49.5 1.0
CB A:ASN304 1.7 57.1 1.0
CG A:ASN217 1.9 53.4 1.0
CB A:ASN217 1.9 53.4 1.0
N A:ALA305 2.0 99.8 1.0
CA A:ASN217 2.0 65.3 1.0
OE2 A:GLU182 2.0 17.1 1.0
O3 A:NAG803 2.1 63.9 0.5
CG2 A:VAL258 2.1 48.4 1.0
OD2 A:ASP180 2.1 24.0 1.0
O A:ASN217 2.1 65.3 1.0
C A:ASN304 2.1 49.5 1.0
OD2 A:ASP246 2.2 13.3 1.0
CG A:ASP248 2.2 28.0 1.0
OD2 A:ASP248 2.2 28.0 1.0
OE1 A:GLN256 2.2 100.0 1.0
O A:ALA254 2.4 24.4 1.0
C A:ASP216 2.4 48.2 1.0
OD1 A:ASN215 2.4 28.6 1.0
CB A:ASP216 2.4 10.1 1.0
NZ A:LYS183 2.6 56.8 1.0
OD1 A:ASN217 2.6 53.4 1.0
CA A:CA909 2.6 12.9 1.0
C A:ASN217 2.7 65.3 1.0
OD1 A:ASP246 2.7 13.3 1.0
C A:GLN256 2.8 30.5 1.0
C A:ALA254 2.8 24.4 1.0
CG A:ASP180 2.9 24.0 1.0
CG A:ASP246 2.9 13.3 1.0
CA A:ALA305 2.9 99.8 1.0
CA A:ASP216 3.0 48.2 1.0
N A:ASN304 3.0 49.5 1.0
O A:PRO253 3.0 55.7 1.0
CD A:GLU182 3.1 17.1 1.0
CA A:ALA254 3.1 24.4 1.0
CB A:ALA305 3.2 99.8 1.0
CD A:LYS183 3.2 56.8 1.0
N A:ASP216 3.2 48.2 1.0
C3 A:NAG803 3.2 63.9 0.5
O A:ASP216 3.2 48.2 1.0
C4 A:NAG803 3.3 63.9 0.5
OE2 A:GLU157 3.3 79.2 1.0
O A:ASN304 3.3 49.5 1.0
CG A:ASP216 3.3 10.1 1.0
CE A:LYS183 3.3 56.8 1.0
CD A:GLN256 3.3 100.0 1.0
O4 A:NAG803 3.4 63.9 0.5
O A:PRO158 3.4 43.1 1.0
OD1 A:ASP180 3.4 24.0 1.0
CB A:ASP248 3.4 28.0 1.0
O7 A:NAG803 3.4 63.9 0.5
N A:TRP255 3.4 50.6 1.0
CB A:VAL258 3.4 48.4 1.0
CG A:ASN215 3.5 28.6 1.0
OD1 A:ASP216 3.5 10.1 1.0
O A:GLU303 3.5 54.6 1.0
C A:ASN215 3.6 34.3 1.0
O A:ALA257 3.6 51.8 1.0
C A:ALA257 3.6 51.8 1.0
C2 A:NAG803 3.6 63.9 0.5
CB A:ASP180 3.6 24.0 1.0
CA A:GLN256 3.7 30.5 1.0
C A:GLU303 3.7 54.6 1.0
N A:GLN256 3.7 30.5 1.0
CG A:GLU182 3.7 17.1 1.0
CB A:GLN256 3.8 100.0 1.0
N A:ALA257 3.8 51.8 1.0
N A:ALA218 3.8 45.7 1.0
N A:VAL258 3.8 61.4 1.0
C A:PRO253 3.8 55.7 1.0
CB A:ALA254 3.9 24.4 1.0
CA A:PRO158 3.9 43.1 1.0
NE2 A:GLN256 3.9 100.0 1.0
CA A:ALA257 3.9 51.8 1.0
CA A:ASN215 3.9 34.3 1.0
CA A:VAL258 4.0 61.4 1.0
N A:ASP248 4.0 22.1 1.0
ND2 A:ASN215 4.0 28.6 1.0
CB A:PRO158 4.0 43.1 1.0
CB A:GLU182 4.0 17.1 1.0
O A:ASN215 4.0 34.3 1.0
CA A:CA908 4.0 10.5 1.0
CG A:PRO158 4.0 43.1 1.0
N A:ALA254 4.1 24.4 1.0
CA A:TRP255 4.1 50.6 1.0
OD2 A:ASP216 4.1 10.1 1.0
CG1 A:VAL258 4.1 48.4 1.0
OE1 A:GLU182 4.1 17.1 1.0
CG A:LYS183 4.2 56.8 1.0
C A:PRO158 4.2 43.1 1.0
O A:ALA214 4.2 30.5 1.0
O3 A:NDG903 4.2 56.2 0.5
C7 A:NAG803 4.2 63.9 0.5
O4 A:NDG903 4.3 56.2 0.5
CE2 A:PHE184 4.3 49.3 1.0
C A:TRP255 4.3 50.6 1.0
CA A:ASP248 4.3 22.1 1.0
C A:ALA305 4.3 99.8 1.0
CG A:GLN256 4.3 100.0 1.0
CB A:ASP246 4.4 13.3 1.0
N2 A:NAG803 4.4 63.9 0.5
CD A:GLU157 4.5 79.2 1.0
CB A:ASN215 4.5 28.6 1.0
CA A:ALA218 4.5 45.7 1.0
O6 A:NAG803 4.6 63.9 0.5
CB A:LYS183 4.6 56.8 1.0
C5 A:NAG803 4.6 63.9 0.5
CG A:GLU157 4.6 79.2 1.0
N A:GLU306 4.6 62.2 1.0
CG A:PRO219 4.7 52.0 1.0
O5 A:NAG803 4.7 63.9 0.5
CZ A:PHE184 4.7 49.3 1.0
C1 A:NAG803 4.8 63.9 0.5
N A:LEU247 4.8 48.5 1.0
C A:LEU247 4.8 48.5 1.0
CE1 A:PHE308 4.8 0.0 1.0
OE1 A:GLU119 4.8 8.7 1.0
CA A:PRO253 4.9 55.7 1.0
C A:ALA218 5.0 45.7 1.0
N A:PRO158 5.0 43.1 1.0

Calcium binding site 7 out of 24 in 1q5a

Go back to Calcium Binding Sites List in 1q5a
Calcium binding site 7 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca911

b:37.4
occ:1.00
 N A:LYS402 0.4 0.0 1.0
CA A:SER441 0.5 0.0 1.0
OG1 A:THR425 0.6 99.7 1.0
CG2 A:THR425 0.6 99.7 1.0
CB A:THR425 0.6 99.7 1.0
OG1 A:THR407 0.9 99.3 1.0
CB A:THR407 0.9 99.3 1.0
SD A:MET447 0.9 57.0 1.0
O A:PHE290 1.0 52.9 1.0
O A:VAL401 1.0 83.5 1.0
C A:VAL401 1.0 83.5 1.0
CG2 A:THR407 1.1 99.3 1.0
C A:PHE290 1.2 52.9 1.0
CD A:PRO442 1.2 82.0 1.0
N A:SER441 1.2 0.0 1.0
O A:NDG811 1.3 0.0 0.8
O3 A:NAG807 1.4 62.6 0.5
C A:SER441 1.4 0.0 1.0
CE A:MET447 1.4 57.0 1.0
CA A:PHE290 1.4 52.9 1.0
CA A:LYS402 1.5 0.0 1.0
OG1 A:THR405 1.6 0.0 1.0
N A:PRO442 1.6 82.0 1.0
C1 A:NDG811 1.6 0.0 0.8
CG A:GLN455 1.7 97.8 1.0
N2 A:NAG807 1.7 62.6 0.5
CD1 A:LEU457 1.7 65.7 1.0
O A:LYS294 1.7 0.0 1.0
OE1 A:GLN501 1.7 86.9 1.0
OE2 A:GLU328 1.8 0.0 1.0
CA A:THR425 1.8 64.5 1.0
OG1 A:THR322 1.8 99.7 1.0
C1 A:NAG808 1.8 83.7 0.5
CB A:GLN455 1.9 97.8 1.0
CG A:GLN501 1.9 86.9 1.0
OE2 A:GLU291 1.9 52.9 1.0
N A:THR425 1.9 64.5 1.0
CD A:GLN501 1.9 86.9 1.0
CB A:SER441 1.9 0.0 1.0
C7 A:NAG807 2.0 62.6 0.5
CE2 A:PHE445 2.0 0.0 1.0
O A:THR423 2.1 91.3 1.0
OE1 A:GLU232 2.1 49.7 1.0
CG A:LYS294 2.1 100.0 1.0
C3 A:NAG807 2.1 62.6 0.5
OE2 A:GLU232 2.1 49.7 1.0
C A:PRO440 2.1 75.5 1.0
CZ A:PHE445 2.1 0.0 1.0
N A:PHE290 2.2 52.9 1.0
C2 A:NAG807 2.2 62.6 0.5
CG A:PRO442 2.2 82.0 1.0
O5 A:NAG808 2.2 83.7 0.5
CD A:GLU232 2.2 49.7 1.0
CA A:LYS294 2.3 0.0 1.0
CA A:VAL401 2.3 83.5 1.0
O7 A:NAG808 2.3 83.7 0.5
CA A:THR407 2.3 0.0 1.0
CB A:VAL323 2.3 37.3 1.0
O A:PRO442 2.3 82.0 1.0
N A:GLU291 2.3 99.8 1.0
O A:SER441 2.4 0.0 1.0
C A:LYS294 2.4 0.0 1.0
O A:PRO440 2.4 75.5 1.0
N A:VAL323 2.4 0.0 1.0
OG A:SER441 2.4 0.0 1.0
O A:ASP289 2.4 0.0 1.0
CE1 A:PHE445 2.4 0.0 1.0
CG A:PRO452 2.4 99.8 1.0
C8 A:NAG807 2.5 62.6 0.5
CG A:MET447 2.5 57.0 1.0
C5 A:NDG811 2.5 0.0 0.8
CA A:THR322 2.5 85.2 1.0
O7 A:NAG807 2.5 62.6 0.5
CB A:LYS402 2.5 100.0 1.0
C A:LYS402 2.5 0.0 1.0
CG A:LEU457 2.5 65.7 1.0
CD1 A:PHE445 2.6 0.0 1.0
CB A:THR322 2.6 99.7 1.0
N A:THR407 2.6 0.0 1.0
O A:ARG293 2.6 59.5 1.0
CB A:LYS294 2.7 100.0 1.0
C A:ASP289 2.7 0.0 1.0
CG2 A:THR322 2.7 99.7 1.0
CG2 A:THR320 2.7 82.8 1.0
NE2 A:GLN501 2.7 86.9 1.0
CD2 A:PHE445 2.7 0.0 1.0
CA A:PRO442 2.8 82.0 1.0
CD A:PRO452 2.8 99.8 1.0
O A:LYS402 2.8 0.0 1.0
O A:TYR400 2.8 0.0 1.0
O A:VAL323 2.8 0.0 1.0
CB A:GLN501 2.8 86.9 1.0
CA A:GLY424 2.8 56.9 1.0
O A:VAL321 2.8 0.0 1.0
OD2 A:ASP289 2.9 99.7 1.0
CB A:PHE290 2.9 99.0 1.0
C A:THR425 2.9 64.5 1.0
CD A:GLN455 2.9 97.8 1.0
CB A:PRO452 2.9 99.8 1.0
CD A:GLU291 2.9 52.9 1.0
CB A:THR405 2.9 0.0 1.0
C A:GLY424 2.9 56.9 1.0
CD A:GLU328 2.9 0.0 1.0
CG2 A:VAL323 2.9 37.3 1.0
CA A:VAL323 3.0 0.0 1.0
CB A:LEU457 3.0 65.7 1.0
C A:PRO442 3.0 82.0 1.0
C2 A:NDG811 3.0 0.0 0.8
CG A:PHE445 3.0 0.0 1.0
CG1 A:VAL323 3.0 37.3 1.0
CG A:PRO498 3.0 0.0 1.0
C7 A:NAG808 3.1 83.7 0.5
CG A:LYS402 3.1 100.0 1.0
OG A:SER460 3.1 76.5 1.0
C A:THR423 3.1 91.3 1.0
CG A:GLU232 3.1 49.7 1.0
CB A:PRO442 3.1 82.0 1.0
O A:ASP449 3.1 0.0 1.0
O A:THR405 3.2 0.0 1.0
C A:THR322 3.2 85.2 1.0
C2 A:NAG808 3.2 83.7 0.5
CA A:GLN501 3.2 0.0 1.0
C A:THR405 3.2 0.0 1.0
N A:TYR406 3.2 96.1 1.0
NE2 A:GLN455 3.2 97.8 1.0
CD A:PRO498 3.2 0.0 1.0
CG2 A:THR405 3.2 0.0 1.0
C6 A:NDG811 3.2 0.0 0.8
O A:ASN403 3.2 0.0 1.0
N A:VAL401 3.2 83.5 1.0
N A:LEU426 3.3 0.0 1.0
C A:VAL323 3.3 0.0 1.0
CB A:VAL401 3.3 92.7 1.0
O A:VAL456 3.3 100.0 1.0
CA A:LEU457 3.3 0.0 1.0
N A:ASN403 3.3 0.0 1.0
C A:THR407 3.4 0.0 1.0
CA A:GLN455 3.4 0.0 1.0
C A:TYR400 3.4 0.0 1.0
C A:TYR406 3.4 96.1 1.0
N A:THR322 3.4 85.2 1.0
CD A:LYS294 3.4 100.0 1.0
CG1 A:VAL401 3.4 92.7 1.0
C A:VAL321 3.5 0.0 1.0
CA A:PRO440 3.5 75.5 1.0
O A:GLN450 3.5 0.0 1.0
N A:GLY424 3.5 56.9 1.0
N A:LYS294 3.5 0.0 1.0
N2 A:NAG808 3.5 83.7 0.5
CB A:PHE331 3.5 96.7 1.0
CA A:TYR406 3.5 96.1 1.0
C5 A:NAG808 3.5 83.7 0.5
C4 A:NAG807 3.5 62.6 0.5
OE1 A:GLU291 3.5 52.9 1.0
OE1 A:GLU328 3.5 0.0 1.0
C A:ARG293 3.5 59.5 1.0
O A:GLN501 3.5 0.0 1.0
CA A:GLU291 3.5 99.8 1.0
O A:THR425 3.6 64.5 1.0
C8 A:NAG810 3.6 79.0 0.5
C3 A:NDG811 3.6 0.0 0.8
CD2 A:PHE290 3.6 99.0 1.0
CB A:MET447 3.6 57.0 1.0
C4 A:NDG811 3.6 0.0 0.8
C1 A:NAG807 3.6 62.6 0.5
CB A:SER460 3.6 76.5 1.0
O A:GLN455 3.6 0.0 1.0
CA A:THR405 3.7 0.0 1.0
O6 A:NDG811 3.7 0.0 0.8
CA A:CA915 3.7 70.2 1.0
N A:GLN295 3.7 91.9 1.0
N2 A:NDG811 3.7 0.0 0.8
OE1 A:GLN455 3.7 97.8 1.0
C A:GLN501 3.7 0.0 1.0
CG A:PHE290 3.7 99.0 1.0
O4 A:NAG807 3.7 62.6 0.5
CE A:LYS294 3.8 100.0 1.0
C A:GLN455 3.8 0.0 1.0
CB A:PRO359 3.8 92.7 1.0
N A:VAL408 3.8 99.0 1.0
CG A:GLU328 3.8 0.0 1.0
CE A:LYS402 3.9 100.0 1.0
C8 A:NAG808 3.9 83.7 0.5
O A:THR407 3.9 0.0 1.0
CB A:PRO440 3.9 75.5 1.0
O A:LEU496 3.9 89.3 1.0
CA A:ASP289 3.9 0.0 1.0
CD2 A:LEU496 3.9 80.3 1.0
CD2 A:LEU457 3.9 65.7 1.0
CG A:GLU291 3.9 52.9 1.0
CB A:GLU291 3.9 52.9 1.0
CZ3 A:TRP483 3.9 0.0 1.0
N A:THR458 4.0 89.0 1.0
CD2 A:PHE331 4.0 96.7 1.0
CG A:GLN295 4.0 77.0 1.0
CB A:GLU328 4.0 0.0 1.0
CG1 A:ILE409 4.0 52.3 1.0
O A:GLY424 4.0 56.9 1.0
O A:CYS448 4.0 0.0 1.0
N A:GLN455 4.0 0.0 1.0
C A:VAL456 4.0 100.0 1.0
O A:SER398 4.0 0.0 1.0
CB A:THR320 4.0 82.8 1.0
CB A:PHE445 4.0 0.0 1.0
CB A:ALA335 4.0 97.4 1.0
CG A:ASP289 4.0 99.7 1.0
CA A:GLN295 4.1 91.9 1.0
CG A:PRO359 4.1 92.7 1.0
CB A:PRO498 4.1 0.0 1.0
CG A:PHE331 4.1 96.7 1.0
O A:THR458 4.1 89.0 1.0
O A:GLN500 4.1 0.0 1.0
C3 A:NAG808 4.1 83.7 0.5
CB A:LEU496 4.1 80.3 1.0
NZ A:LYS294 4.1 100.0 1.0
N A:LEU457 4.2 0.0 1.0
N A:THR405 4.2 0.0 1.0
N A:PRO452 4.2 99.8 1.0
CD A:LYS402 4.2 100.0 1.0
O A:LEU426 4.2 0.0 1.0
O A:VAL408 4.2 99.0 1.0
O A:VAL439 4.2 53.0 1.0
OG1 A:THR458 4.2 69.7 1.0
O A:TYR406 4.2 96.1 1.0
CA A:PRO452 4.2 99.8 1.0
C A:ASN403 4.3 0.0 1.0
CH2 A:TRP483 4.3 0.0 1.0
C A:LEU426 4.3 0.0 1.0
CG1 A:VAL525 4.3 54.0 1.0
C A:GLN450 4.3 0.0 1.0
N A:ARG443 4.3 83.8 1.0
C6 A:NAG808 4.3 83.7 0.5
O A:ALA329 4.3 93.5 1.0
CG2 A:ILE409 4.3 52.3 1.0
CB A:GLU232 4.3 49.7 1.0
NH1 A:ARG443 4.4 95.2 1.0
C A:ASP449 4.4 0.0 1.0
C A:LEU457 4.4 0.0 1.0
O A:THR322 4.4 85.2 1.0
CA A:THR423 4.4 91.3 1.0
OG1 A:THR320 4.4 82.8 1.0
CA A:LEU426 4.4 0.0 1.0
OD2 A:ASP325 4.4 64.5 1.0
N A:LEU292 4.4 96.5 1.0
C4 A:NAG808 4.4 83.7 0.5
CE2 A:PHE290 4.4 99.0 1.0
N A:GLN501 4.4 0.0 1.0
O5 A:NAG807 4.5 62.6 0.5
O A:GLU324 4.5 0.0 1.0
O7 A:NAG810 4.5 79.0 0.5
O7 A:NDG811 4.5 0.0 0.8
C A:GLU291 4.5 99.8 1.0
N A:ILE427 4.5 0.0 1.0
C7 A:NDG811 4.6 0.0 0.8
CA A:ASN403 4.6 0.0 1.0
C7 A:NAG810 4.6 79.0 0.5
CB A:ILE427 4.6 0.0 1.0
CG A:LEU496 4.6 80.3 1.0
N A:PRO440 4.6 75.5 1.0
O A:GLU399 4.6 97.0 1.0
NE2 A:GLN295 4.6 77.0 1.0
CA A:ALA335 4.6 97.4 1.0
N A:GLU324 4.6 0.0 1.0
C5 A:NAG807 4.6 62.6 0.5
CD1 A:ILE409 4.6 52.3 1.0
N A:THR423 4.6 91.3 1.0
CG2 A:THR227 4.6 92.2 1.0
CG2 A:VAL401 4.6 92.7 1.0
O4 A:NDG811 4.6 0.0 0.8
CA A:PHE331 4.7 76.3 1.0
C8 A:NAG812 4.7 67.8 0.5
CA A:ILE427 4.7 0.0 1.0
C A:VAL408 4.7 99.0 1.0
N A:VAL456 4.7 100.0 1.0
N A:PRO498 4.7 0.0 1.0
CB A:ASP289 4.7 99.7 1.0
CD1 A:PHE290 4.7 99.0 1.0
CE2 A:PHE331 4.7 96.7 1.0
C A:SER398 4.7 0.0 1.0
N A:LEU502 4.7 0.0 1.0
CA A:MET447 4.7 86.8 1.0
CA A:VAL321 4.7 0.0 1.0
N A:ASP289 4.7 0.0 1.0
O A:GLU397 4.8 0.0 1.0
CB A:GLN295 4.8 77.0 1.0
CD A:GLN295 4.8 77.0 1.0
C A:THR458 4.8 89.0 1.0
O6 A:NAG808 4.8 83.7 0.5
C A:LEU496 4.8 89.3 1.0
O A:GLU453 4.8 0.0 1.0
O A:PRO452 4.8 99.8 1.0
C A:VAL439 4.8 53.0 1.0
CA A:GLN450 4.8 0.0 1.0
CB A:THR423 4.8 95.4 1.0
CD A:PRO359 4.8 92.7 1.0
O A:PRO330 4.8 43.9 1.0
CA A:TYR400 4.9 0.0 1.0
N A:VAL321 4.9 0.0 1.0
C A:GLN500 4.9 0.0 1.0
CB A:ILE409 4.9 52.3 1.0
C A:PRO452 4.9 99.8 1.0
N A:ARG293 4.9 59.5 1.0
CA A:VAL408 4.9 99.0 1.0
CA A:ARG293 4.9 59.5 1.0
C A:GLU399 4.9 97.0 1.0
CB A:TYR406 4.9 84.1 1.0
N A:ASN451 4.9 99.7 1.0
CA A:ASN451 4.9 99.7 1.0
OD1 A:ASP289 4.9 99.7 1.0
CA A:THR458 4.9 89.0 1.0
O A:LEU502 5.0 0.0 1.0
C A:THR320 5.0 81.8 1.0
O3 A:NDG811 5.0 0.0 0.8

Calcium binding site 8 out of 24 in 1q5a

Go back to Calcium Binding Sites List in 1q5a
Calcium binding site 8 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca912

b:90.9
occ:1.00
 O A:VAL524 0.6 0.0 1.0
CD1 A:TYR507 0.6 0.0 1.0
OD1 A:ASN327 0.6 0.0 1.0
N A:VAL525 0.7 0.0 1.0
CA A:MET410 0.7 74.1 1.0
CD A:PRO330 0.8 43.9 1.0
CD2 A:LEU502 0.8 100.0 1.0
C A:VAL524 0.9 0.0 1.0
CE1 A:TYR507 0.9 0.0 1.0
CG A:ASN327 0.9 0.0 1.0
OH A:TYR406 1.0 84.1 1.0
C A:MET410 1.0 74.1 1.0
CG1 A:VAL408 1.0 56.5 1.0
CG A:PRO330 1.0 43.9 1.0
CB A:MET410 1.0 99.6 1.0
N A:LEU411 1.1 61.9 1.0
CZ A:TYR406 1.2 84.1 1.0
CG1 A:VAL412 1.3 42.6 1.0
CA A:LEU411 1.3 61.9 1.0
N A:VAL412 1.3 0.0 1.0
C A:LEU411 1.3 61.9 1.0
ND2 A:ASN327 1.5 0.0 1.0
CA A:VAL525 1.6 0.0 1.0
C A:VAL525 1.6 0.0 1.0
CA A:SER508 1.7 0.0 1.0
C A:SER508 1.7 0.0 1.0
O A:ILE409 1.7 99.5 1.0
CG A:LEU502 1.7 100.0 1.0
O A:VAL412 1.8 0.0 1.0
CE2 A:TYR406 1.8 84.1 1.0
NE2 A:GLN362 1.8 0.0 1.0
CD1 A:LEU502 1.8 100.0 1.0
CZ A:TYR507 1.8 0.0 1.0
OD2 A:ASP358 1.8 96.2 1.0
CG A:MET410 1.8 99.6 1.0
N A:MET410 1.9 74.1 1.0
CG A:TYR507 1.9 0.0 1.0
CA A:VAL412 1.9 0.0 1.0
O A:VAL525 1.9 0.0 1.0
O A:TYR507 1.9 0.0 1.0
CB A:VAL412 2.0 42.6 1.0
O A:MET410 2.0 74.1 1.0
N A:ILE509 2.0 85.9 1.0
CB A:ASN327 2.0 0.0 1.0
N A:ASN526 2.0 0.0 1.0
O A:SER508 2.0 0.0 1.0
CZ A:PHE332 2.1 99.8 1.0
N A:PRO330 2.1 43.9 1.0
O A:GLU328 2.1 0.0 1.0
OD1 A:ASP360 2.1 90.8 1.0
O A:LEU411 2.2 61.9 1.0
C A:VAL412 2.2 0.0 1.0
C A:ILE409 2.2 99.5 1.0
CE1 A:TYR406 2.2 84.1 1.0
CB A:LEU502 2.2 100.0 1.0
CB A:ASP414 2.2 82.2 1.0
OD1 A:ASP325 2.2 64.5 1.0
CG2 A:VAL408 2.2 56.5 1.0
CG A:ASP414 2.3 82.2 1.0
CA A:VAL524 2.3 0.0 1.0
CB A:VAL408 2.3 56.5 1.0
OD2 A:ASP414 2.3 82.2 1.0
C A:TYR507 2.3 0.0 1.0
CB A:PRO330 2.4 43.9 1.0
N A:LYS503 2.4 0.0 1.0
CD A:GLN362 2.4 0.0 1.0
N A:SER508 2.4 0.0 1.0
CE2 A:TYR507 2.4 0.0 1.0
OE1 A:GLN365 2.4 0.0 1.0
CZ2 A:TRP378 2.5 0.0 1.0
CG A:ASP360 2.5 90.8 1.0
CD2 A:TYR507 2.5 0.0 1.0
NE A:ARG443 2.6 95.2 1.0
CA A:LEU502 2.6 0.0 1.0
CA A:ASN526 2.6 0.0 1.0
OE1 A:GLN362 2.6 0.0 1.0
CB A:SER508 2.6 76.8 1.0
CH2 A:TRP378 2.7 0.0 1.0
OD1 A:ASP414 2.7 82.2 1.0
O A:GLY422 2.7 72.5 1.0
CG2 A:THR523 2.7 0.0 1.0
CD1 A:TYR400 2.7 0.0 1.0
CB A:SER398 2.7 0.0 1.0
CA A:ASN327 2.8 0.0 1.0
CB A:LEU411 2.8 78.1 1.0
CB A:VAL525 2.8 54.0 1.0
CA A:PRO330 2.8 43.9 1.0
CG2 A:VAL412 2.9 42.6 1.0
OH A:TYR507 2.9 0.0 1.0
CE1 A:PHE332 2.9 99.8 1.0
CG2 A:VAL525 2.9 54.0 1.0
C A:ALA329 2.9 93.5 1.0
CG A:LYS503 2.9 100.0 1.0
CG A:ASP358 3.0 96.2 1.0
O A:PRO375 3.0 0.0 1.0
CB A:ASP360 3.0 90.8 1.0
CG2 A:ILE509 3.0 50.8 1.0
C A:LEU502 3.0 0.0 1.0
CB A:ASP325 3.0 64.5 1.0
N A:GLU399 3.1 97.0 1.0
CE2 A:PHE332 3.1 99.8 1.0
N A:GLY422 3.1 72.5 1.0
OD2 A:ASP360 3.1 90.8 1.0
CG A:ASP325 3.1 64.5 1.0
CB A:VAL524 3.1 0.0 1.0
CA A:ALA329 3.1 93.5 1.0
NH2 A:ARG443 3.1 95.2 1.0
CB A:TYR507 3.1 0.0 1.0
CD2 A:TYR406 3.1 84.1 1.0
SD A:MET410 3.1 99.6 1.0
N A:VAL524 3.1 0.0 1.0
O A:PHE370 3.1 63.2 1.0
C A:GLU328 3.2 0.0 1.0
OD1 A:ASP358 3.2 96.2 1.0
N A:THR413 3.2 99.8 1.0
OG A:SER398 3.2 0.0 1.0
CA A:GLY422 3.2 72.5 1.0
CA A:ASP414 3.2 82.6 1.0
OD1 A:ASN526 3.2 97.7 1.0
CA A:ILE509 3.3 85.9 1.0
N A:ASP414 3.3 82.6 1.0
CD1 A:TYR406 3.3 84.1 1.0
N A:ILE409 3.3 99.5 1.0
CD A:ARG443 3.3 95.2 1.0
CG2 A:ILE371 3.3 0.0 1.0
N A:GLY372 3.3 0.0 1.0
C A:ASN526 3.3 0.0 1.0
CZ3 A:TRP378 3.4 0.0 1.0
CB A:GLU399 3.4 0.0 1.0
CA A:VAL408 3.4 99.0 1.0
C A:ASN327 3.4 0.0 1.0
CE2 A:TRP378 3.4 0.0 1.0
CZ A:ARG443 3.4 95.2 1.0
CB A:LYS503 3.4 100.0 1.0
CG A:GLN362 3.4 0.0 1.0
CA A:ILE409 3.4 99.5 1.0
CD1 A:LEU379 3.5 0.0 1.0
CA A:LYS503 3.5 0.0 1.0
CD A:GLN365 3.5 0.0 1.0
O A:PRO330 3.5 43.9 1.0
N A:GLU328 3.5 0.0 1.0
CZ2 A:TRP483 3.5 0.0 1.0
CE1 A:TYR400 3.5 0.0 1.0
CA A:TYR507 3.5 0.0 1.0
O A:ILE509 3.5 85.9 1.0
CG A:TYR400 3.5 0.0 1.0
NE2 A:GLN365 3.5 0.0 1.0
C A:GLY422 3.5 72.5 1.0
C A:PRO330 3.6 43.9 1.0
N A:ALA527 3.6 90.4 1.0
CB A:ILE509 3.6 50.8 1.0
C A:SER398 3.6 0.0 1.0
O A:ASN373 3.6 0.0 1.0
CG2 A:VAL524 3.6 0.0 1.0
C A:VAL408 3.6 99.0 1.0
CA A:ILE371 3.6 92.8 1.0
CA A:SER398 3.6 0.0 1.0
C A:THR421 3.6 0.0 1.0
CA A:THR413 3.7 99.8 1.0
N A:ASN373 3.7 0.0 1.0
N A:ALA329 3.7 93.5 1.0
C A:PRO375 3.7 0.0 1.0
CG A:TYR406 3.7 84.1 1.0
CB A:TYR400 3.7 0.0 1.0
C A:THR413 3.7 99.8 1.0
CB A:ALA527 3.8 90.4 1.0
CG A:ARG443 3.8 95.2 1.0
CB A:GLN362 3.8 0.0 1.0
CG A:LEU411 3.8 78.1 1.0
C A:THR523 3.8 0.0 1.0
N A:ASN327 3.8 0.0 1.0
CE3 A:TRP378 3.8 0.0 1.0
CB A:ASN526 3.8 97.7 1.0
CA A:GLU399 3.8 97.0 1.0
N A:LEU502 3.8 0.0 1.0
O A:ALA376 3.8 81.9 1.0
C A:ILE371 3.8 92.8 1.0
CD A:LYS503 3.9 100.0 1.0
OG A:SER508 3.9 76.8 1.0
NE1 A:TRP483 3.9 0.0 1.0
CD2 A:LEU411 3.9 78.1 1.0
CD1 A:ILE371 3.9 0.0 1.0
CD2 A:TRP378 3.9 0.0 1.0
CG A:ASN526 4.0 97.7 1.0
C A:ILE509 4.0 85.9 1.0
O A:ALA329 4.0 93.5 1.0
CB A:ILE371 4.0 0.0 1.0
CG1 A:ILE371 4.0 0.0 1.0
CG1 A:VAL525 4.0 54.0 1.0
O A:ASN526 4.0 0.0 1.0
CA A:GLU328 4.0 0.0 1.0
O A:ASN327 4.0 0.0 1.0
CD1 A:LEU522 4.1 0.0 1.0
CB A:THR523 4.1 0.0 1.0
CE2 A:TRP483 4.1 0.0 1.0
CE A:LYS503 4.1 100.0 1.0
C A:ASN373 4.1 0.0 1.0
O A:THR523 4.1 0.0 1.0
O A:THR421 4.1 0.0 1.0
N A:TYR400 4.1 0.0 1.0
CB A:ALA329 4.1 93.5 1.0
CA A:THR421 4.1 0.0 1.0
N A:SER398 4.1 0.0 1.0
N A:THR421 4.1 0.0 1.0
CD1 A:PHE332 4.1 99.8 1.0
CB A:ASP358 4.1 96.2 1.0
OD2 A:ASP325 4.1 64.5 1.0
CE A:MET410 4.1 99.6 1.0
CD2 A:LEU379 4.1 0.0 1.0
C8 A:NAG904 4.2 27.2 0.5
NZ A:LYS294 4.2 100.0 1.0
NE1 A:TRP378 4.2 0.0 1.0
CA A:GLY372 4.2 0.0 1.0
C A:GLY420 4.3 93.4 1.0
CB A:PRO375 4.3 0.0 1.0
CA A:ASP325 4.3 0.0 1.0
CG1 A:VAL524 4.3 0.0 1.0
O A:LEU502 4.3 0.0 1.0
C A:PHE370 4.3 63.2 1.0
O A:VAL419 4.3 0.0 1.0
CD2 A:LEU522 4.3 0.0 1.0
CG1 A:VAL439 4.3 0.0 1.0
O A:VAL408 4.3 99.0 1.0
CA A:GLY420 4.3 93.4 1.0
N A:ALA376 4.3 81.9 1.0
C A:VAL326 4.3 0.0 1.0
CA A:ASN373 4.3 0.0 1.0
CD2 A:PHE332 4.3 99.8 1.0
C A:GLY372 4.4 0.0 1.0
CA A:ASP374 4.4 0.0 1.0
CA A:PRO375 4.4 0.0 1.0
O A:GLY424 4.4 56.9 1.0
O A:VAL326 4.4 0.0 1.0
N A:PRO375 4.4 0.0 1.0
C A:ASP374 4.4 0.0 1.0
CA A:ALA527 4.4 90.4 1.0
C A:ASP325 4.4 0.0 1.0
N A:TYR507 4.4 0.0 1.0
O A:ARG443 4.4 83.8 1.0
O A:SER398 4.4 0.0 1.0
O A:ASP325 4.4 0.0 1.0
CG A:LEU379 4.4 0.0 1.0
C A:ALA376 4.5 81.9 1.0
O A:THR413 4.5 99.8 1.0
N A:PHE331 4.5 76.3 1.0
CB A:ASN373 4.5 93.9 1.0
N A:ASP325 4.5 0.0 1.0
N A:ASP374 4.5 0.0 1.0
CA A:ASP360 4.5 65.5 1.0
CG A:GLU399 4.5 0.0 1.0
O A:GLY420 4.5 93.4 1.0
O A:THR407 4.6 0.0 1.0
C A:ASP414 4.6 82.6 1.0
N A:VAL408 4.6 99.0 1.0
CB A:ARG443 4.6 95.2 1.0
CH2 A:TRP483 4.6 0.0 1.0
CD2 A:TYR400 4.6 0.0 1.0
CA A:THR523 4.6 0.0 1.0
CB A:ILE409 4.6 52.3 1.0
O A:ASP395 4.6 76.5 1.0
C A:LYS503 4.6 0.0 1.0
N A:ILE371 4.7 92.8 1.0
CZ A:TYR400 4.7 0.0 1.0
O A:LYS503 4.7 0.0 1.0
C A:GLN501 4.7 0.0 1.0
CA A:CA915 4.7 70.2 1.0
NH1 A:ARG443 4.7 95.2 1.0
C A:GLU399 4.7 97.0 1.0
CA A:ALA376 4.7 81.9 1.0
O A:ILE371 4.7 92.8 1.0
CG A:GLN365 4.7 0.0 1.0
O A:LEU481 4.7 0.0 1.0
CG A:PHE332 4.8 99.8 1.0
CA A:TYR400 4.8 0.0 1.0
O A:ASP374 4.8 0.0 1.0
N A:THR423 4.8 91.3 1.0
O A:GLN501 4.8 0.0 1.0
N A:GLY424 4.9 56.9 1.0
N A:ASP360 4.9 65.5 1.0
CG A:LEU522 4.9 0.0 1.0
O A:ALA527 4.9 90.4 1.0
N A:VAL326 4.9 0.0 1.0
CG A:PRO359 4.9 92.7 1.0
CG A:TRP378 4.9 0.0 1.0
CG2 A:VAL401 5.0 92.7 1.0
CB A:LEU367 5.0 55.1 1.0
C A:THR407 5.0 0.0 1.0

Calcium binding site 9 out of 24 in 1q5a

Go back to Calcium Binding Sites List in 1q5a
Calcium binding site 9 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca913

b:34.6
occ:1.00
 CD2 A:LEU354 0.4 26.1 1.0
CA A:VAL511 0.8 0.0 1.0
N A:LEU481 0.9 0.0 1.0
O A:TYR510 1.0 0.0 1.0
C A:VAL511 1.0 0.0 1.0
N A:THR482 1.1 0.0 1.0
O A:ALA356 1.1 52.5 1.0
O A:VAL511 1.1 0.0 1.0
CG A:LEU354 1.2 26.1 1.0
CD1 A:ILE352 1.2 72.5 1.0
C A:TYR510 1.3 0.0 1.0
N A:VAL511 1.3 0.0 1.0
N A:ALA356 1.3 52.5 1.0
CA A:ASN436 1.4 56.8 1.0
CB A:GLN363 1.4 0.0 1.0
CB A:LEU522 1.5 0.0 1.0
CB A:ASN436 1.5 72.3 1.0
N A:GLN362 1.5 0.0 1.0
CA A:ASP395 1.5 76.5 1.0
O A:GLY478 1.5 99.2 1.0
CG A:GLN363 1.5 0.0 1.0
C A:LEU481 1.6 0.0 1.0
CG A:ASN436 1.6 72.3 1.0
CA A:LEU522 1.7 0.0 1.0
C A:LYS361 1.7 71.2 1.0
CA A:ALA356 1.7 52.5 1.0
CD1 A:LEU428 1.8 63.9 1.0
CD1 A:LEU354 1.8 26.1 1.0
N A:LEU522 1.8 0.0 1.0
O A:LYS361 1.8 71.2 1.0
CA A:LEU481 1.8 0.0 1.0
N A:ASN436 1.8 56.8 1.0
C A:ALA356 1.9 52.5 1.0
O A:GLN521 1.9 0.0 1.0
N A:ARG396 1.9 89.7 1.0
OE1 A:GLU343 1.9 72.9 1.0
CB A:ALA356 1.9 52.5 1.0
CD A:GLU343 2.0 72.9 1.0
C A:ASP395 2.0 76.5 1.0
OD1 A:ASN436 2.0 72.3 1.0
N A:GLN363 2.0 0.0 1.0
CG A:ASP435 2.0 64.9 1.0
CB A:VAL511 2.0 48.3 1.0
CB A:ASP435 2.0 64.9 1.0
C A:ASP480 2.0 0.0 1.0
C A:VAL355 2.1 83.7 1.0
N A:ASP395 2.1 76.5 1.0
CA A:LYS361 2.1 71.2 1.0
CG1 A:ILE352 2.1 72.5 1.0
ND2 A:ASN436 2.1 72.3 1.0
CB A:LEU354 2.1 26.1 1.0
OD2 A:ASP395 2.1 88.0 1.0
C A:GLN521 2.2 0.0 1.0
CG A:ASP395 2.2 88.0 1.0
N A:LEU512 2.3 39.9 1.0
OE2 A:GLU343 2.3 72.9 1.0
CD2 A:LEU394 2.3 96.3 1.0
N A:GLY437 2.3 93.1 1.0
CA A:THR482 2.3 0.0 1.0
OD1 A:ASP435 2.3 64.9 1.0
O A:PRO520 2.4 95.2 1.0
CA A:GLN362 2.4 0.0 1.0
NZ A:LYS361 2.4 99.8 1.0
CB A:PRO520 2.4 95.2 1.0
OD2 A:ASP435 2.4 64.9 1.0
CD A:GLN500 2.4 100.0 1.0
OG1 A:THR482 2.4 0.0 1.0
O A:ASP360 2.4 65.5 1.0
CG A:LEU522 2.4 0.0 1.0
CA A:GLN363 2.4 0.0 1.0
CB A:LEU394 2.4 96.3 1.0
CG2 A:VAL388 2.4 72.7 1.0
OE1 A:GLU397 2.4 75.5 1.0
CG A:GLU343 2.4 72.9 1.0
NE2 A:GLN500 2.4 100.0 1.0
OD1 A:ASP395 2.5 88.0 1.0
CD A:GLN363 2.5 0.0 1.0
C A:GLY478 2.5 99.2 1.0
CG A:GLN500 2.5 100.0 1.0
C A:ASN436 2.5 56.8 1.0
CA A:VAL355 2.6 83.7 1.0
CD1 A:TRP483 2.6 0.0 1.0
CA A:TYR510 2.6 0.0 1.0
C A:LEU522 2.6 0.0 1.0
CB A:ASP395 2.6 88.0 1.0
CB A:LEU481 2.7 72.1 1.0
CD2 A:LEU475 2.7 54.0 1.0
N A:THR523 2.7 0.0 1.0
O A:VAL355 2.7 83.7 1.0
O A:LEU481 2.7 0.0 1.0
O A:GLY437 2.7 93.1 1.0
N A:GLN357 2.8 67.7 1.0
C A:LEU394 2.8 71.8 1.0
OE1 A:GLN363 2.8 0.0 1.0
CA A:GLN357 2.8 67.7 1.0
N A:ASP358 2.8 99.7 1.0
C A:GLN362 2.8 0.0 1.0
CB A:THR482 2.8 0.0 1.0
CA A:ASP480 2.8 0.0 1.0
OE1 A:GLN500 2.8 100.0 1.0
N A:TYR510 2.8 0.0 1.0
CG A:LYS361 2.9 99.8 1.0
CB A:LYS361 2.9 99.8 1.0
C A:ASP435 2.9 99.6 1.0
O A:PRO438 2.9 75.9 1.0
CG2 A:VAL511 3.0 48.3 1.0
CG1 A:VAL388 3.0 72.7 1.0
C A:PRO520 3.0 95.2 1.0
CB A:VAL388 3.0 72.7 1.0
N A:ASP480 3.0 0.0 1.0
N A:VAL355 3.0 83.7 1.0
O A:ASP480 3.0 0.0 1.0
N A:LYS361 3.1 71.2 1.0
CG1 A:VAL511 3.1 48.3 1.0
O A:ASP358 3.1 99.7 1.0
CA A:LEU512 3.1 39.9 1.0
CE2 A:TYR369 3.1 55.3 1.0
CG A:LEU394 3.1 96.3 1.0
CB A:TRP483 3.1 0.0 1.0
N A:GLN521 3.1 0.0 1.0
CE A:LYS361 3.1 99.8 1.0
CD1 A:ILE351 3.1 27.4 1.0
CG A:LEU428 3.2 63.9 1.0
CG1 A:ILE509 3.2 50.8 1.0
C A:THR482 3.2 0.0 1.0
C A:LEU354 3.2 62.9 1.0
O A:ASP395 3.2 76.5 1.0
CA A:GLY437 3.2 93.1 1.0
C A:ASP360 3.2 65.5 1.0
CG A:TRP483 3.2 0.0 1.0
CA A:ARG396 3.2 89.7 1.0
CA A:ASP435 3.2 99.6 1.0
C A:GLY437 3.2 93.1 1.0
CB A:GLU343 3.3 72.9 1.0
CG A:PRO520 3.3 95.2 1.0
CE A:MET410 3.3 99.6 1.0
O A:LEU394 3.3 71.8 1.0
CG1 A:VAL430 3.3 99.6 1.0
C A:GLN357 3.3 67.7 1.0
CD A:GLU397 3.3 75.5 1.0
OH A:TYR369 3.3 55.3 1.0
CB A:ILE352 3.3 72.5 1.0
NE2 A:GLN363 3.3 0.0 1.0
CA A:GLY478 3.4 99.2 1.0
CG A:GLU397 3.4 75.5 1.0
O A:THR523 3.4 0.0 1.0
CA A:GLN521 3.4 0.0 1.0
N A:TRP483 3.4 99.9 1.0
CA A:LEU394 3.4 71.8 1.0
CB A:ASP358 3.4 96.2 1.0
CD2 A:LEU522 3.4 0.0 1.0
CB A:GLU397 3.4 75.5 1.0
CG2 A:ILE351 3.4 27.4 1.0
CB A:LEU475 3.4 54.0 1.0
CA A:LEU354 3.4 62.9 1.0
C A:ILE509 3.4 85.9 1.0
N A:SER479 3.5 82.9 1.0
CA A:PRO520 3.5 95.2 1.0
O A:LEU522 3.5 0.0 1.0
CB A:TYR510 3.5 0.0 1.0
N A:GLU397 3.5 0.0 1.0
CB A:GLN500 3.6 100.0 1.0
O A:LEU354 3.6 62.9 1.0
CA A:LEU475 3.6 0.0 1.0
CD1 A:LEU522 3.6 0.0 1.0
C A:SER479 3.6 82.9 1.0
CG A:LEU475 3.7 54.0 1.0
CA A:CA916 3.7 85.4 1.0
CB A:GLN362 3.7 0.0 1.0
CA A:ASP358 3.7 99.7 1.0
C A:GLN363 3.7 0.0 1.0
O A:ASN436 3.7 56.8 1.0
O A:ASP435 3.7 99.6 1.0
NE1 A:TRP483 3.7 0.0 1.0
O A:SER474 3.8 99.2 1.0
CA A:SER479 3.8 82.9 1.0
CZ A:TYR369 3.8 55.3 1.0
O A:ILE509 3.8 85.9 1.0
CA A:THR523 3.8 0.0 1.0
CB A:VAL355 3.8 82.9 1.0
O A:THR482 3.8 0.0 1.0
CG2 A:VAL439 3.8 0.0 1.0
C A:ASP358 3.8 99.7 1.0
O A:ILE352 3.8 76.5 1.0
CA A:GLU343 3.9 0.0 1.0
CD1 A:LEU426 3.9 100.0 1.0
CD1 A:PHE332 3.9 99.8 1.0
OE1 A:GLN357 3.9 96.0 1.0
CD A:LYS361 3.9 99.8 1.0
CG A:LEU481 3.9 72.1 1.0
CD2 A:TYR369 3.9 55.3 1.0
CB A:LEU512 3.9 36.9 1.0
CB A:ARG396 3.9 100.0 1.0
O A:GLN362 3.9 0.0 1.0
CB A:LEU428 4.0 63.9 1.0
CZ3 A:TRP378 4.0 0.0 1.0
CA A:TRP483 4.0 99.9 1.0
C A:PRO438 4.0 75.9 1.0
C A:ARG396 4.0 89.7 1.0
CD2 A:LEU367 4.0 55.1 1.0
CD1 A:ILE509 4.0 50.8 1.0
CB A:ASP480 4.0 0.0 1.0
CG2 A:VAL430 4.0 99.6 1.0
CD2 A:LEU428 4.0 63.9 1.0
N A:SER476 4.0 99.4 1.0
O A:GLN363 4.1 0.0 1.0
CA A:ILE509 4.1 85.9 1.0
C A:THR523 4.1 0.0 1.0
CB A:GLN357 4.1 96.0 1.0
CG A:LEU426 4.1 100.0 1.0
CB A:ILE509 4.1 50.8 1.0
CD1 A:LEU481 4.1 72.1 1.0
CG2 A:ILE352 4.1 72.5 1.0
N A:ASP435 4.1 99.6 1.0
CB A:ILE351 4.1 27.4 1.0
CG1 A:VAL341 4.1 31.7 1.0
CE3 A:TRP378 4.1 0.0 1.0
C A:LEU512 4.2 39.9 1.0
N A:LEU354 4.2 62.9 1.0
O A:GLN357 4.2 67.7 1.0
CG2 A:THR482 4.2 0.0 1.0
C A:LEU475 4.2 0.0 1.0
N A:LEU513 4.2 0.0 1.0
N A:PRO438 4.2 75.9 1.0
CA A:GLU397 4.3 0.0 1.0
SD A:MET410 4.3 99.6 1.0
CD1 A:LEU475 4.3 54.0 1.0
CG2 A:VAL339 4.3 49.8 1.0
OD1 A:ASP480 4.3 0.0 1.0
OE2 A:GLU397 4.3 75.5 1.0
CB A:GLN521 4.3 0.0 1.0
OD1 A:ASP358 4.4 96.2 1.0
N A:GLY478 4.4 99.2 1.0
O A:SER479 4.4 82.9 1.0
CB A:VAL430 4.4 99.6 1.0
CG1 A:ILE351 4.4 27.4 1.0
CG A:GLN357 4.4 96.0 1.0
CD1 A:LEU394 4.5 96.3 1.0
CA A:PHE332 4.5 0.0 1.0
O A:PHE331 4.5 76.3 1.0
CA A:ILE352 4.5 76.5 1.0
CA A:VAL388 4.5 60.0 1.0
CD2 A:LEU426 4.5 100.0 1.0
CD2 A:TRP483 4.5 0.0 1.0
N A:LEU394 4.5 71.8 1.0
O A:PRO359 4.5 92.7 1.0
CG A:ASP358 4.5 96.2 1.0
CE1 A:PHE332 4.5 99.8 1.0
CD A:PRO520 4.6 95.2 1.0
CB A:PHE332 4.6 99.8 1.0
C A:ILE352 4.6 76.5 1.0
O A:TRP483 4.6 99.9 1.0
CA A:ASP360 4.6 65.5 1.0
N A:PRO520 4.6 95.2 1.0
CG A:PHE332 4.6 99.8 1.0
CH2 A:TRP378 4.6 0.0 1.0
O A:GLU343 4.7 0.0 1.0
CG A:ASP480 4.7 0.0 1.0
OD2 A:ASP463 4.7 90.9 1.0
CD2 A:LEU379 4.7 0.0 1.0
N A:GLU343 4.7 0.0 1.0
N A:ILE352 4.7 76.5 1.0
CA A:PRO438 4.7 75.9 1.0
CD A:GLN357 4.7 96.0 1.0
O A:GLY386 4.7 57.8 1.0
CE2 A:TRP483 4.8 0.0 1.0
N A:ILE364 4.8 0.0 1.0
C A:SER474 4.8 99.2 1.0
CG1 A:VAL355 4.8 82.9 1.0
C A:GLU343 4.8 0.0 1.0
C A:TRP483 4.8 99.9 1.0
CG A:GLN362 4.8 0.0 1.0
CB A:THR523 4.8 0.0 1.0
CG2 A:VAL355 4.8 82.9 1.0
N A:LEU475 4.8 0.0 1.0
N A:VAL388 4.9 60.0 1.0
CA A:GLN500 4.9 0.0 1.0
CG A:TYR510 4.9 0.0 1.0
C A:PRO359 4.9 92.7 1.0
CG2 A:VAL433 4.9 38.3 1.0
CB A:ALA462 5.0 0.0 1.0
N A:VAL439 5.0 53.0 1.0

Calcium binding site 10 out of 24 in 1q5a

Go back to Calcium Binding Sites List in 1q5a
Calcium binding site 10 out of 24 in the S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of S-Shaped Trans Interactions of Cadherins Model Based on Fitting C- Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca914

b:69.9
occ:1.00
 CD A:ARG338 0.5 100.0 1.0
O A:VAL339 0.6 87.1 1.0
CA A:VAL339 0.6 87.1 1.0
NE2 A:GLN357 0.6 96.0 1.0
C A:LEU431 0.7 0.0 1.0
O A:LEU431 0.8 0.0 1.0
CA A:LEU431 0.9 0.0 1.0
CB A:LEU513 0.9 0.0 1.0
OD1 A:ASP432 0.9 99.7 1.0
N A:LEU431 0.9 0.0 1.0
C A:VAL339 0.9 87.1 1.0
OD1 A:ASP463 1.0 90.9 1.0
N A:VAL339 1.0 87.1 1.0
CG A:PRO438 1.0 75.9 1.0
CD A:PRO438 1.1 75.9 1.0
CG A:ASP463 1.1 90.9 1.0
CA A:ASP432 1.1 0.0 1.0
O A:VAL433 1.1 0.0 1.0
CG A:ARG338 1.2 100.0 1.0
CB A:VAL339 1.2 49.8 1.0
CA A:LEU513 1.3 0.0 1.0
CG A:ASP432 1.4 99.7 1.0
OD2 A:ASP515 1.4 0.0 1.0
O A:VAL341 1.4 89.4 1.0
O A:HIS429 1.4 0.0 1.0
NE A:ARG338 1.4 100.0 1.0
N A:VAL341 1.4 89.4 1.0
N A:SER474 1.4 99.2 1.0
CB A:ARG338 1.5 100.0 1.0
N A:ASP432 1.5 0.0 1.0
CD A:GLN357 1.5 96.0 1.0
N A:VAL433 1.6 0.0 1.0
CD2 A:LEU513 1.6 0.0 1.0
CZ A:ARG338 1.6 100.0 1.0
OD1 A:ASN434 1.7 68.5 1.0
NH1 A:ARG338 1.7 100.0 1.0
OD2 A:ASP463 1.7 90.9 1.0
CB A:LEU431 1.7 65.8 1.0
CG2 A:VAL339 1.8 49.8 1.0
CG1 A:VAL473 1.8 100.0 1.0
CA A:VAL473 1.9 0.0 1.0
C A:VAL473 1.9 0.0 1.0
CB A:ASP463 1.9 90.9 1.0
N A:SER514 1.9 49.0 1.0
C A:ASP432 1.9 0.0 1.0
O A:TRP483 1.9 99.9 1.0
CG A:LEU513 1.9 0.0 1.0
OD2 A:ASP432 1.9 99.7 1.0
C A:VAL430 2.0 0.0 1.0
CB A:ASP432 2.0 99.7 1.0
C A:LEU513 2.0 0.0 1.0
CD1 A:LEU475 2.1 54.0 1.0
O A:LEU512 2.1 39.9 1.0
C A:ARG338 2.1 0.0 1.0
N A:ASP340 2.1 57.6 1.0
C A:VAL433 2.2 0.0 1.0
OD2 A:ASP461 2.2 0.0 1.0
OD1 A:ASP461 2.2 0.0 1.0
CG2 A:VAL333 2.2 68.3 1.0
OE1 A:GLN357 2.2 96.0 1.0
CG2 A:THR499 2.2 85.4 1.0
CD A:LYS361 2.3 99.8 1.0
C A:ASP340 2.3 57.6 1.0
CG A:GLN357 2.3 96.0 1.0
C A:VAL341 2.3 89.4 1.0
CB A:PRO438 2.3 75.9 1.0
CG A:ASP515 2.3 0.0 1.0
CA A:ASN434 2.4 0.0 1.0
CA A:VAL341 2.4 89.4 1.0
CB A:VAL473 2.4 100.0 1.0
CG1 A:VAL339 2.4 49.8 1.0
CG A:LEU475 2.4 54.0 1.0
CA A:CA916 2.4 85.4 1.0
CG A:ASN434 2.4 68.5 1.0
N A:LEU513 2.4 0.0 1.0
NH2 A:ARG338 2.5 100.0 1.0
CA A:ASP340 2.5 57.6 1.0
N A:PRO438 2.5 75.9 1.0
CG2 A:ILE352 2.5 72.5 1.0
CA A:SER474 2.6 99.2 1.0
CA A:VAL430 2.6 0.0 1.0
CA A:ARG338 2.6 0.0 1.0
CB A:ALA485 2.6 95.4 1.0
C A:HIS429 2.6 0.0 1.0
O A:ASN436 2.7 56.8 1.0
O A:LYS472 2.7 0.0 1.0
CG2 A:VAL355 2.7 82.9 1.0
CG1 A:VAL341 2.7 31.7 1.0
CG A:LEU431 2.7 65.8 1.0
OD1 A:ASP480 2.7 0.0 1.0
CA A:VAL433 2.7 0.0 1.0
CG A:ASP461 2.7 0.0 1.0
C A:LEU512 2.7 39.9 1.0
OG1 A:THR499 2.8 85.4 1.0
O A:VAL430 2.8 0.0 1.0
CA A:SER514 2.9 49.0 1.0
C A:SER474 2.9 99.2 1.0
CB A:ASP515 2.9 0.0 1.0
N A:ASN434 2.9 0.0 1.0
CA A:GLY437 2.9 93.1 1.0
C A:SER514 3.0 49.0 1.0
C A:TRP483 3.0 99.9 1.0
O A:ARG338 3.0 0.0 1.0
NE A:ARG396 3.0 100.0 1.0
CB A:VAL341 3.0 31.7 1.0
O A:VAL473 3.0 0.0 1.0
CD A:ARG396 3.0 100.0 1.0
CE A:LYS361 3.0 99.8 1.0
O A:ASN467 3.0 44.5 1.0
CA A:LYS484 3.0 99.9 1.0
CD1 A:LEU513 3.1 0.0 1.0
ND2 A:ASN434 3.1 68.5 1.0
CB A:ASN434 3.1 68.5 1.0
O A:ASP432 3.1 0.0 1.0
OE2 A:GLU397 3.1 75.5 1.0
O A:SER474 3.1 99.2 1.0
O A:SER514 3.1 49.0 1.0
N A:VAL473 3.1 0.0 1.0
CG2 A:VAL433 3.1 38.3 1.0
N A:ASP435 3.2 99.6 1.0
OD1 A:ASP515 3.2 0.0 1.0
CB A:THR499 3.2 85.4 1.0
C A:ASN434 3.2 0.0 1.0
O A:LEU513 3.2 0.0 1.0
CG1 A:VAL336 3.2 47.5 1.0
N A:VAL430 3.2 0.0 1.0
CG A:LYS361 3.2 99.8 1.0
N A:LEU475 3.2 0.0 1.0
CA A:ASP463 3.2 0.0 1.0
CA A:PRO438 3.2 75.9 1.0
CB A:LEU475 3.3 54.0 1.0
C A:GLY437 3.3 93.1 1.0
N A:ALA485 3.3 95.4 1.0
N A:ASP515 3.3 99.8 1.0
N A:SER342 3.3 72.5 1.0
C A:LYS472 3.4 0.0 1.0
O A:SER479 3.4 82.9 1.0
CA A:SER342 3.4 72.5 1.0
N A:LYS484 3.4 99.9 1.0
CG1 A:VAL333 3.4 68.3 1.0
O A:ASP340 3.4 57.6 1.0
CD1 A:LEU431 3.4 65.8 1.0
CB A:LYS484 3.5 100.0 1.0
CB A:VAL333 3.5 68.3 1.0
O A:VAL355 3.5 83.7 1.0
CD2 A:TYR471 3.5 0.0 1.0
CG2 A:VAL473 3.5 100.0 1.0
OD1 A:ASN467 3.5 73.4 1.0
CE2 A:TYR471 3.5 0.0 1.0
N A:HIS429 3.6 0.0 1.0
CB A:ASN467 3.6 73.4 1.0
CB A:VAL433 3.6 38.3 1.0
CD2 A:LEU475 3.6 54.0 1.0
C A:ASN436 3.6 56.8 1.0
N A:ARG338 3.6 0.0 1.0
CA A:HIS429 3.7 0.0 1.0
CG1 A:VAL430 3.7 99.6 1.0
CB A:ARG396 3.7 100.0 1.0
CB A:GLN357 3.7 96.0 1.0
CA A:ALA485 3.8 95.4 1.0
CG A:ASP480 3.8 0.0 1.0
CD2 A:LEU431 3.8 65.8 1.0
CB A:VAL430 3.8 99.6 1.0
NE2 A:GLN500 3.8 100.0 1.0
NZ A:LYS361 3.8 99.8 1.0
OD2 A:ASP435 3.9 64.9 1.0
CB A:SER474 3.9 77.0 1.0
CA A:ASP515 3.9 99.8 1.0
CB A:LYS361 3.9 99.8 1.0
CB A:ILE352 3.9 72.5 1.0
N A:GLY437 3.9 93.1 1.0
CG A:LYS484 3.9 100.0 1.0
CB A:HIS429 3.9 69.8 1.0
CB A:VAL355 3.9 82.9 1.0
N A:GLU343 3.9 0.0 1.0
N A:ASP463 4.0 0.0 1.0
C A:LYS484 4.0 99.9 1.0
CG A:ARG396 4.0 100.0 1.0
CA A:LEU475 4.0 0.0 1.0
CG A:ASN467 4.0 73.4 1.0
CD A:PRO334 4.0 53.3 1.0
N A:ILE464 4.0 88.0 1.0
CB A:ASP340 4.0 82.5 1.0
C A:SER342 4.1 72.5 1.0
CD A:GLU397 4.1 75.5 1.0
CA A:LEU512 4.1 39.9 1.0
N A:VAL355 4.1 83.7 1.0
CG2 A:ILE464 4.1 100.0 1.0
OD2 A:ASP480 4.1 0.0 1.0
N A:TRP483 4.1 99.9 1.0
CZ A:ARG396 4.1 100.0 1.0
NH2 A:ARG396 4.1 100.0 1.0
C A:VAL355 4.1 83.7 1.0
C A:ASN467 4.1 44.5 1.0
N A:LEU512 4.1 39.9 1.0
CB A:LEU428 4.1 63.9 1.0
CB A:ASP461 4.2 0.0 1.0
C A:LEU428 4.2 0.0 1.0
C A:ASP463 4.2 0.0 1.0
O A:THR499 4.2 0.0 1.0
CB A:SER514 4.2 0.0 1.0
O A:ASN434 4.2 0.0 1.0
OG A:SER474 4.2 77.0 1.0
CB A:VAL336 4.3 47.5 1.0
CA A:TRP483 4.3 99.9 1.0
OG1 A:THR482 4.3 0.0 1.0
CA A:LEU428 4.3 0.0 1.0
OE1 A:GLU397 4.3 75.5 1.0
OE1 A:GLU343 4.3 72.9 1.0
CA A:VAL355 4.4 83.7 1.0
CB A:LEU354 4.4 26.1 1.0
CB A:SER342 4.4 49.2 1.0
CG2 A:VAL341 4.4 31.7 1.0
O A:PRO520 4.4 95.2 1.0
C A:PRO438 4.4 75.9 1.0
CD A:LYS484 4.4 100.0 1.0
ND1 A:HIS429 4.4 69.8 1.0
CA A:LEU354 4.4 62.9 1.0
OG A:SER514 4.5 0.0 1.0
O A:GLY437 4.5 93.1 1.0
O A:GLN517 4.5 0.0 1.0
C A:SER479 4.5 82.9 1.0
OD1 A:ASP340 4.5 82.5 1.0
N A:ASN436 4.5 56.8 1.0
CA A:ASP435 4.5 99.6 1.0
CG2 A:VAL336 4.5 47.5 1.0
C A:ASP435 4.5 99.6 1.0
CB A:GLU343 4.5 72.9 1.0
O A:SER353 4.5 79.6 1.0
CA A:ASN467 4.6 44.5 1.0
CA A:THR499 4.6 0.0 1.0
CG2 A:THR482 4.6 0.0 1.0
O A:PRO438 4.6 75.9 1.0
CD A:GLN500 4.7 100.0 1.0
N A:VAL333 4.7 82.6 1.0
CG A:TYR471 4.7 0.0 1.0
N A:LYS472 4.7 0.0 1.0
O A:ILE464 4.7 88.0 1.0
CG1 A:VAL511 4.7 48.3 1.0
CG2 A:ILE351 4.7 27.4 1.0
CG2 A:THR468 4.7 0.0 1.0
CE A:MET494 4.7 85.0 1.0
CA A:VAL333 4.7 82.6 1.0
N A:PRO520 4.7 95.2 1.0
CA A:ASN436 4.7 56.8 1.0
CZ A:TYR471 4.7 0.0 1.0
CA A:ILE352 4.7 76.5 1.0
CG A:HIS429 4.8 69.8 1.0
CG A:PRO334 4.8 53.3 1.0
C A:THR499 4.8 0.0 1.0
CA A:LYS472 4.8 0.0 1.0
CA A:GLN357 4.8 67.7 1.0
O A:ASP435 4.8 99.6 1.0
CG A:ASP435 4.8 64.9 1.0
CA A:THR482 4.8 0.0 1.0
CG A:ASP340 4.8 82.5 1.0
C A:SER337 4.8 0.0 1.0
O A:LEU428 4.8 0.0 1.0
CB A:TYR471 4.9 0.0 1.0
CG2 A:VAL430 4.9 99.6 1.0
CG A:LEU428 4.9 63.9 1.0
O A:ILE351 4.9 42.0 1.0
CD1 A:ILE352 4.9 72.5 1.0
O A:SER342 4.9 72.5 1.0
OH A:TYR471 4.9 0.0 1.0
CG1 A:ILE352 4.9 72.5 1.0
CB A:ASN518 4.9 88.3 1.0
N A:ALA356 4.9 52.5 1.0
CA A:GLU343 4.9 0.0 1.0
CG1 A:VAL433 4.9 38.3 1.0
CB A:TRP483 5.0 0.0 1.0
C A:LEU354 5.0 62.9 1.0
O A:ALA356 5.0 52.5 1.0
CB A:LEU512 5.0 36.9 1.0
C A:ALA356 5.0 52.5 1.0
CB A:THR482 5.0 0.0 1.0

Reference:

W.He, P.Cowin, D.L.Stokes. Untangling Desmosomal Knots with Electron Tomography Science V. 302 109 2003.
ISSN: ISSN 0036-8075
PubMed: 14526082
DOI: 10.1126/SCIENCE.1086957
Page generated: Sat Dec 12 03:15:10 2020

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