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Calcium in PDB 1q5b: Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Calcium atom in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography (pdb code 1q5b). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 36 binding sites of Calcium where determined in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography, PDB code: 1q5b:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 36 in 1q5b

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Calcium binding site 1 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca905

b:22.4
occ:1.00
 CA A:ASP134 0.6 47.4 1.0
CG A:ASP134 0.7 51.6 1.0
CG A:ASN102 0.8 55.7 1.0
CB A:ASP134 0.9 51.6 1.0
OD1 A:ASP134 1.0 51.6 1.0
N A:ASP134 1.1 47.4 1.0
OD1 A:ASN102 1.1 55.7 1.0
ND2 A:ASN102 1.2 55.7 1.0
C A:ASP134 1.3 47.4 1.0
CB A:THR133 1.3 57.5 1.0
CG2 A:THR133 1.3 57.5 1.0
OD2 A:ASP134 1.4 51.6 1.0
O A:ASP134 1.6 47.4 1.0
CB A:ASN102 1.7 55.7 1.0
C A:THR133 2.1 87.0 1.0
O A:ASN104 2.3 47.5 1.0
O A:ASN143 2.3 41.2 1.0
OD1 A:ASP195 2.4 34.4 1.0
CA A:THR133 2.4 87.0 1.0
OG1 A:THR133 2.4 57.5 1.0
N A:GLU135 2.5 26.0 1.0
O A:ASN102 2.7 33.5 1.0
CA A:ASN102 2.7 33.5 1.0
OD2 A:ASP136 2.7 42.7 1.0
OD2 A:ASP195 2.8 34.4 1.0
CG A:ASP195 3.0 34.4 1.0
O A:THR133 3.1 87.0 1.0
C A:ASN102 3.1 33.5 1.0
C A:ASN104 3.4 47.5 1.0
C A:ASN143 3.5 41.2 1.0
CA A:GLU135 3.6 26.0 1.0
CG A:ASP136 3.7 42.7 1.0
N A:ASP136 3.7 14.1 1.0
N A:THR133 3.8 87.0 1.0
CB A:ASP136 3.8 42.7 1.0
CA A:GLY144 3.9 31.3 1.0
N A:ASN102 4.0 33.5 1.0
N A:ASP103 4.0 73.5 1.0
N A:ASN104 4.0 47.5 1.0
CD1 A:LEU201 4.1 44.2 1.0
CA A:ASN104 4.1 47.5 1.0
CB A:ASN104 4.1 79.0 1.0
CA A:ASN143 4.1 41.2 1.0
C A:GLU135 4.3 26.0 1.0
N A:GLY144 4.3 31.3 1.0
CB A:ASN143 4.4 34.4 1.0
O A:ALA132 4.4 55.7 1.0
CA A:PRO106 4.5 47.0 1.0
C A:ALA132 4.5 55.7 1.0
O A:GLY144 4.5 31.3 1.0
CB A:ASP195 4.5 34.4 1.0
CA A:ASP136 4.5 14.1 1.0
N A:ARG105 4.6 90.2 1.0
C A:GLY144 4.6 31.3 1.0
C A:ARG105 4.6 90.2 1.0
N A:PRO106 4.7 47.0 1.0
CB A:PRO106 4.7 47.0 1.0
CD1 A:LEU146 4.7 22.8 1.0
O A:ARG105 4.7 90.2 1.0
CG A:LEU201 4.7 44.2 1.0
CB A:GLU135 4.8 99.1 1.0
OD1 A:ASP136 4.9 42.7 1.0
CA A:ARG105 4.9 90.2 1.0
O A:ASP136 5.0 14.1 1.0
CA A:ASP103 5.0 73.5 1.0
CD2 A:LEU146 5.0 22.8 1.0
C A:ASP103 5.0 73.5 1.0

Calcium binding site 2 out of 36 in 1q5b

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Calcium binding site 2 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca906

b:5.0
occ:1.00
 OE1 A:GLN101 0.4 71.4 1.0
CD A:GLN101 0.9 71.4 1.0
CB A:GLN101 1.0 71.4 1.0
OE2 A:GLU69 1.1 15.8 1.0
O A:GLU135 1.4 26.0 1.0
O A:GLN101 1.5 43.4 1.0
CG A:GLN101 1.6 71.4 1.0
NE2 A:GLN101 1.8 71.4 1.0
CA A:GLN101 1.8 43.4 1.0
OD1 A:ASP136 1.9 42.7 1.0
OE1 A:GLU11 1.9 21.0 1.0
C A:GLN101 1.9 43.4 1.0
CD A:GLU69 2.2 15.8 1.0
N A:GLN101 2.2 43.4 1.0
C A:GLU135 2.4 26.0 1.0
OD2 A:ASP103 2.5 33.9 1.0
OD1 A:ASP103 2.6 33.9 1.0
OD2 A:ASP100 2.7 34.3 1.0
CG A:ASP103 2.8 33.9 1.0
CA A:ASP136 2.8 14.1 1.0
OE1 A:GLU69 2.8 15.8 1.0
CG A:GLU69 2.9 15.8 1.0
CG A:GLU135 2.9 99.1 1.0
N A:ASN102 3.0 33.5 1.0
N A:ASP136 3.0 14.1 1.0
CG A:ASP136 3.0 42.7 1.0
CB A:GLU135 3.0 99.1 1.0
OD1 A:ASP100 3.1 34.3 1.0
CD A:GLU11 3.1 21.0 1.0
CA A:GLU135 3.1 26.0 1.0
NE A:ARG68 3.2 39.4 1.0
CG A:ASP100 3.2 34.3 1.0
NH2 A:ARG68 3.3 39.4 1.0
CB A:ASP136 3.4 42.7 1.0
OE2 A:GLU11 3.5 21.0 1.0
C A:ASP100 3.5 42.9 1.0
N A:ASP103 3.5 73.5 1.0
C A:ASP136 3.6 14.1 1.0
CD A:GLU135 3.7 99.1 1.0
ND2 A:ASN104 3.8 79.0 1.0
CZ A:ARG68 3.9 39.4 1.0
CB A:ASP103 3.9 33.9 1.0
CD A:ARG68 3.9 39.4 1.0
OD2 A:ASP136 4.0 42.7 1.0
CG A:ARG68 4.0 39.4 1.0
OE2 A:GLU135 4.0 99.1 1.0
O A:GLU11 4.0 30.1 1.0
CA A:ASN102 4.0 33.5 1.0
CG A:GLU11 4.0 21.0 1.0
C A:ASN102 4.1 33.5 1.0
CA A:ASP100 4.1 42.9 1.0
N A:ASP137 4.1 49.5 1.0
O A:ASP136 4.2 14.1 1.0
CB A:ASP100 4.2 34.3 1.0
O A:ASP100 4.3 42.9 1.0
CB A:GLU69 4.3 15.8 1.0
OE1 A:GLU135 4.3 99.1 1.0
CA A:ASP103 4.4 73.5 1.0
OD1 A:ASN12 4.4 43.9 1.0
CA A:CA907 4.5 15.4 1.0
N A:GLU135 4.6 26.0 1.0
CB A:GLU11 4.6 21.0 1.0
CA A:GLU69 4.6 33.9 1.0
CB A:ASN12 4.7 43.9 1.0
O A:ASN12 4.8 34.7 1.0
CG A:ASN104 4.8 79.0 1.0
C A:GLU11 4.9 30.1 1.0
OG A:SER10 4.9 46.9 1.0
N A:GLU69 4.9 33.9 1.0
CB A:ASN104 5.0 79.0 1.0
O A:ASN102 5.0 33.5 1.0

Calcium binding site 3 out of 36 in 1q5b

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Calcium binding site 3 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca907

b:15.4
occ:1.00
 OD1 A:ASN12 0.8 43.9 1.0
CG A:ASN12 0.9 43.9 1.0
CB A:ASN12 1.4 43.9 1.0
CB A:GLU69 1.4 15.8 1.0
CG A:GLU69 1.7 15.8 1.0
OD2 A:ASP67 1.8 32.7 1.0
OE1 A:GLU69 1.8 15.8 1.0
O A:ASN12 2.0 34.7 1.0
OD1 A:ASP103 2.1 33.9 1.0
ND2 A:ASN12 2.2 43.9 1.0
CD A:GLU69 2.5 15.8 1.0
OE2 A:GLU135 2.5 99.1 1.0
CG A:ASP67 2.5 32.7 1.0
OD1 A:ASP67 2.6 32.7 1.0
CA A:ASN12 2.7 34.7 1.0
OE2 A:GLU11 2.7 21.0 1.0
OE1 A:GLU135 2.7 99.1 1.0
CG A:ASP103 2.8 33.9 1.0
C A:ASN12 2.9 34.7 1.0
CA A:GLU69 2.9 33.9 1.0
CD A:GLU135 3.0 99.1 1.0
CD A:GLU11 3.2 21.0 1.0
CB A:ASP103 3.4 33.9 1.0
CG A:GLU11 3.4 21.0 1.0
O A:GLU69 3.5 33.9 1.0
CB A:ARG14 3.5 98.9 1.0
OD2 A:ASP103 3.5 33.9 1.0
C A:GLU69 3.5 33.9 1.0
ND2 A:ASN104 3.5 79.0 1.0
N A:ASN12 3.5 34.7 1.0
O A:ARG14 3.7 49.8 1.0
N A:GLU69 3.7 33.9 1.0
OE2 A:GLU69 3.7 15.8 1.0
O A:GLU11 3.7 30.1 1.0
CB A:ASP67 3.8 32.7 1.0
OE1 A:GLU11 3.9 21.0 1.0
C A:GLU11 4.0 30.1 1.0
CG A:GLU135 4.1 99.1 1.0
CG A:ARG14 4.2 98.9 1.0
N A:GLU13 4.2 53.1 1.0
CA A:ASP67 4.2 43.9 1.0
OE1 A:GLN101 4.2 71.4 1.0
N A:ARG14 4.3 49.8 1.0
N A:GLU70 4.4 47.5 1.0
CA A:ARG14 4.4 49.8 1.0
C A:GLU13 4.4 53.1 1.0
CA A:CA906 4.5 5.0 1.0
CB A:GLU135 4.6 99.1 1.0
O A:LEU66 4.6 41.6 1.0
C A:ARG14 4.6 49.8 1.0
O A:GLU13 4.6 53.1 1.0
CA A:GLU13 4.6 53.1 1.0
CG A:ASN104 4.7 79.0 1.0
C A:ASP67 4.8 43.9 1.0
CB A:GLU11 4.8 21.0 1.0
N A:ARG68 4.8 51.6 1.0
CA A:ASP103 4.9 73.5 1.0
CD A:GLN101 4.9 71.4 1.0

Calcium binding site 4 out of 36 in 1q5b

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Calcium binding site 4 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca908

b:10.5
occ:1.00
 C A:PRO253 0.6 55.7 1.0
OE1 A:GLU182 0.7 17.1 1.0
N A:ALA254 0.7 24.4 1.0
CB A:ALA254 0.9 24.4 1.0
CA A:PRO253 0.9 55.7 1.0
N A:PRO158 1.1 43.1 1.0
CB A:ASP180 1.1 24.0 1.0
OD1 A:ASP180 1.2 24.0 1.0
CA A:ALA254 1.2 24.4 1.0
CA A:PRO158 1.3 43.1 1.0
CG A:ASP180 1.4 24.0 1.0
CG A:PRO158 1.4 43.1 1.0
CD A:GLU182 1.5 17.1 1.0
CD A:PRO158 1.5 43.1 1.0
CA A:ASP180 1.5 28.1 1.0
CB A:ASP248 1.6 28.0 1.0
O A:PRO253 1.7 55.7 1.0
C A:PRO158 1.8 43.1 1.0
C A:ASP180 1.8 28.1 1.0
OD2 A:ASP248 1.9 28.0 1.0
O A:PRO158 1.9 43.1 1.0
OD2 A:ASP213 2.0 47.1 1.0
C A:ALA254 2.0 24.4 1.0
O A:ALA214 2.0 30.5 1.0
CG A:ASP248 2.0 28.0 1.0
OE1 A:GLU119 2.0 8.7 1.0
CD2 A:PHE184 2.1 49.3 1.0
N A:PRO253 2.1 55.7 1.0
C A:GLU157 2.1 70.7 1.0
CA A:GLU157 2.1 70.7 1.0
CB A:PRO253 2.2 55.7 1.0
CE2 A:PHE184 2.2 49.3 1.0
OE2 A:GLU182 2.2 17.1 1.0
OD1 A:ASP216 2.2 10.1 1.0
OE2 A:GLU119 2.2 8.7 1.0
N A:ARG181 2.3 27.8 1.0
O A:ASP180 2.3 28.1 1.0
OD2 A:ASP180 2.3 24.0 1.0
CB A:PRO158 2.3 43.1 1.0
N A:TRP255 2.4 50.6 1.0
N A:GLU182 2.4 40.6 1.0
OE2 A:GLU157 2.5 79.2 1.0
N A:ASP180 2.5 28.1 1.0
CG A:GLU157 2.6 79.2 1.0
CA A:CA909 2.6 12.9 1.0
CD A:GLU119 2.7 8.7 1.0
O A:ALA254 2.7 24.4 1.0
CG A:GLU182 2.7 17.1 1.0
O A:THR252 2.7 38.9 1.0
CB A:ALA305 2.7 99.8 1.0
OD1 A:ASP213 2.7 47.1 1.0
CD A:GLU157 2.7 79.2 1.0
N A:ILE159 2.7 86.8 1.0
CG A:ASP213 2.7 47.1 1.0
C A:THR252 2.7 38.9 1.0
CB A:GLU157 2.8 79.2 1.0
OD1 A:ASP248 2.8 28.0 1.0
O A:GLU156 2.8 24.3 1.0
CA A:ASP248 2.9 22.1 1.0
CG A:PRO253 3.0 55.7 1.0
O A:GLU157 3.0 70.7 1.0
CZ A:PHE184 3.0 49.3 1.0
OE1 A:GLU157 3.1 79.2 1.0
C A:ARG181 3.1 27.8 1.0
CB A:GLN256 3.1 100.0 1.0
C A:ALA214 3.1 30.5 1.0
CA A:ARG181 3.2 27.8 1.0
CB A:GLU182 3.2 17.1 1.0
CG A:ASP216 3.2 10.1 1.0
CG A:PHE184 3.2 49.3 1.0
CA A:GLU182 3.3 40.6 1.0
N A:GLU157 3.4 70.7 1.0
OE2 A:GLU306 3.4 91.8 1.0
CD A:PRO253 3.4 55.7 1.0
N A:LYS183 3.4 45.1 1.0
CA A:ILE159 3.5 86.8 1.0
CB A:ARG181 3.5 47.9 1.0
N A:MET249 3.5 41.8 1.0
OD1 A:ASN215 3.5 28.6 1.0
O A:GLY178 3.6 67.1 1.0
N A:ALA214 3.6 30.5 1.0
CB A:LYS183 3.6 56.8 1.0
C A:LEU179 3.6 22.6 1.0
CG2 A:THR252 3.7 81.4 1.0
C A:GLU156 3.7 24.3 1.0
N A:GLN256 3.7 30.5 1.0
OD2 A:ASP216 3.7 10.1 1.0
C A:ASP248 3.7 22.1 1.0
CE1 A:PHE184 3.7 49.3 1.0
CA A:TRP255 3.8 50.6 1.0
CA A:ASN215 3.9 34.3 1.0
N A:PHE184 3.9 62.0 1.0
NE A:ARG181 3.9 47.9 1.0
CB A:THR252 3.9 81.4 1.0
N A:ASN215 3.9 34.3 1.0
CD1 A:PHE184 3.9 49.3 1.0
CG A:GLN256 3.9 100.0 1.0
CA A:ALA214 4.0 30.5 1.0
ND2 A:ASN217 4.0 53.4 1.0
O A:LEU179 4.0 22.6 1.0
CA A:THR252 4.0 38.9 1.0
N A:ALA305 4.0 99.8 1.0
CA A:CA910 4.0 10.5 1.0
N A:ASP248 4.0 22.1 1.0
CA A:ALA305 4.0 99.8 1.0
OE1 A:GLN256 4.1 100.0 1.0
CB A:PHE184 4.1 49.3 1.0
C A:GLU182 4.1 40.6 1.0
C A:ILE159 4.1 86.8 1.0
CA A:GLN256 4.1 30.5 1.0
CB A:ASP216 4.1 10.1 1.0
CD A:GLN256 4.1 100.0 1.0
CA A:LYS183 4.1 45.1 1.0
CG A:GLU119 4.2 8.7 1.0
CB A:ASP213 4.2 47.1 1.0
O A:ILE159 4.2 86.8 1.0
N A:ASP216 4.2 48.2 1.0
CB A:TRP255 4.3 53.1 1.0
OH A:TYR187 4.3 32.2 1.0
O A:ARG181 4.3 27.8 1.0
O A:GLN256 4.4 30.5 1.0
CD A:GLU306 4.4 91.8 1.0
CG A:ASN215 4.4 28.6 1.0
CD A:PRO160 4.4 38.1 1.0
C A:LYS183 4.4 45.1 1.0
C A:TRP255 4.5 50.6 1.0
OD1 A:ASN304 4.5 57.1 1.0
CD A:LYS183 4.5 56.8 1.0
CG A:GLU306 4.5 91.8 1.0
O A:PHE184 4.6 62.0 1.0
CG A:LYS183 4.6 56.8 1.0
C A:ASP213 4.6 43.1 1.0
CA A:PHE184 4.6 62.0 1.0
O A:MET249 4.6 41.8 1.0
CD A:ARG181 4.6 47.9 1.0
CG A:ARG181 4.6 47.9 1.0
CA A:ASP213 4.6 43.1 1.0
CA A:LEU179 4.6 22.6 1.0
CB A:GLU119 4.6 8.7 1.0
C A:ASN215 4.7 34.3 1.0
CB A:ASN215 4.7 28.6 1.0
O7 A:NAG803 4.7 63.9 0.5
NH2 A:ARG181 4.7 47.9 1.0
C A:GLN256 4.7 30.5 1.0
CA A:MET249 4.7 41.8 1.0
C A:GLY178 4.7 67.1 1.0
NE2 A:GLN256 4.8 100.0 1.0
CG A:ASN304 4.8 57.1 1.0
N A:GLU306 4.8 62.2 1.0
N A:PRO160 4.8 38.1 1.0
CB A:ALA214 4.8 30.5 1.0
CZ A:ARG181 4.9 47.9 1.0
CB A:ILE159 4.9 54.5 1.0
O A:ASP248 4.9 22.1 1.0
CB A:ASN304 4.9 57.1 1.0
OD1 A:ASP246 4.9 13.3 1.0
C A:ALA305 4.9 99.8 1.0
CA A:ASP216 4.9 48.2 1.0
C A:PHE184 5.0 62.0 1.0
N A:ASN217 5.0 65.3 1.0

Calcium binding site 5 out of 36 in 1q5b

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Calcium binding site 5 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca909

b:12.9
occ:1.00
 O A:PRO253 1.0 55.7 1.0
O A:PRO158 1.0 43.1 1.0
OD1 A:ASN215 1.2 28.6 1.0
CB A:ALA305 1.2 99.8 1.0
CG A:ASP216 1.3 10.1 1.0
OD1 A:ASP216 1.4 10.1 1.0
CB A:PRO158 1.4 43.1 1.0
CA A:ALA254 1.6 24.4 1.0
OE2 A:GLU182 1.6 17.1 1.0
CA A:ALA305 1.6 99.8 1.0
CB A:ASP180 1.7 24.0 1.0
N A:ALA305 1.7 99.8 1.0
CA A:PRO158 1.7 43.1 1.0
CB A:ASP216 1.7 10.1 1.0
N A:ASP216 1.7 48.2 1.0
OD1 A:ASP248 1.7 28.0 1.0
CG A:ASP180 1.7 24.0 1.0
C A:PRO158 1.9 43.1 1.0
O A:ALA214 1.9 30.5 1.0
OD1 A:ASP180 1.9 24.0 1.0
OD2 A:ASP248 1.9 28.0 1.0
CG A:PRO158 1.9 43.1 1.0
CB A:ALA254 1.9 24.4 1.0
CG A:ASP248 2.0 28.0 1.0
OD2 A:ASP216 2.0 10.1 1.0
CA A:ASN215 2.1 34.3 1.0
CG A:ASN215 2.1 28.6 1.0
C A:PRO253 2.2 55.7 1.0
OD2 A:ASP180 2.3 24.0 1.0
N A:ALA254 2.4 24.4 1.0
CD A:GLU182 2.4 17.1 1.0
CA A:ASP216 2.4 48.2 1.0
C A:ASN215 2.5 34.3 1.0
OE1 A:GLU119 2.5 8.7 1.0
CA A:CA908 2.6 10.5 1.0
C A:ALA214 2.6 30.5 1.0
OD1 A:ASN304 2.6 57.1 1.0
C A:ALA254 2.6 24.4 1.0
CA A:CA910 2.6 10.5 1.0
CB A:ASN304 2.6 57.1 1.0
OE1 A:GLU182 2.7 17.1 1.0
N A:ASN215 2.7 34.3 1.0
CB A:ASN215 2.8 28.6 1.0
N A:GLU306 2.8 62.2 1.0
O A:GLY178 2.8 67.1 1.0
ND2 A:ASN217 2.9 53.4 1.0
O A:ALA254 2.9 24.4 1.0
CA A:ASP180 2.9 28.1 1.0
C A:ALA305 3.0 99.8 1.0
CG A:ASN304 3.0 57.1 1.0
C A:ASN304 3.0 49.5 1.0
N A:ASN217 3.0 65.3 1.0
ND2 A:ASN215 3.0 28.6 1.0
N A:ILE159 3.1 86.8 1.0
CB A:ASP248 3.1 28.0 1.0
N A:PRO158 3.1 43.1 1.0
CD A:PRO158 3.2 43.1 1.0
OE2 A:GLU119 3.2 8.7 1.0
C A:ASP216 3.2 48.2 1.0
CA A:PRO253 3.3 55.7 1.0
CD A:GLU119 3.3 8.7 1.0
CG A:GLU306 3.4 91.8 1.0
O A:ASN215 3.4 34.3 1.0
CA A:ASN304 3.4 49.5 1.0
OE2 A:GLU157 3.5 79.2 1.0
N A:TRP255 3.5 50.6 1.0
N A:ASP180 3.6 28.1 1.0
CB A:PRO253 3.6 55.7 1.0
OE2 A:GLU306 3.6 91.8 1.0
O A:GLN256 3.7 30.5 1.0
O A:LEU179 3.7 22.6 1.0
CA A:ILE159 3.7 86.8 1.0
CG2 A:ILE159 3.7 54.5 1.0
CE2 A:PHE184 3.8 49.3 1.0
O A:ALA305 3.8 99.8 1.0
O A:ASN304 3.9 49.5 1.0
C A:LEU179 3.9 22.6 1.0
CG A:GLU182 3.9 17.1 1.0
C A:GLY178 3.9 67.1 1.0
O A:GLU306 3.9 62.2 1.0
OE1 A:GLN256 3.9 100.0 1.0
C A:ASP180 3.9 28.1 1.0
O A:ASN217 4.0 65.3 1.0
CD A:GLU306 4.0 91.8 1.0
ND2 A:ASN304 4.0 57.1 1.0
CG2 A:VAL258 4.0 48.4 1.0
OD2 A:ASP213 4.0 47.1 1.0
CA A:ALA214 4.1 30.5 1.0
CG A:ASN217 4.1 53.4 1.0
CA A:GLU306 4.1 62.2 1.0
CA A:ASN217 4.1 65.3 1.0
CB A:GLU306 4.2 91.8 1.0
CD A:GLU157 4.2 79.2 1.0
CB A:GLN256 4.3 100.0 1.0
C A:GLU157 4.3 70.7 1.0
N A:ARG181 4.3 27.8 1.0
CD2 A:PHE184 4.3 49.3 1.0
CB A:ALA214 4.3 30.5 1.0
CA A:ASP248 4.4 22.1 1.0
N A:ALA214 4.4 30.5 1.0
CB A:ILE159 4.4 54.5 1.0
N A:GLN256 4.4 30.5 1.0
O3 A:NAG803 4.4 63.9 0.5
CG A:GLU157 4.4 79.2 1.0
O A:ASP216 4.4 48.2 1.0
CB A:GLU182 4.5 17.1 1.0
CB A:ASN217 4.5 53.4 1.0
N A:PRO253 4.5 55.7 1.0
CA A:GLU157 4.5 70.7 1.0
CG A:GLU119 4.5 8.7 1.0
CA A:GLY178 4.6 67.1 1.0
O A:ASP180 4.6 28.1 1.0
OD1 A:ASP246 4.6 13.3 1.0
C A:GLN256 4.6 30.5 1.0
CD A:GLN256 4.6 100.0 1.0
OD2 A:ASP246 4.6 13.3 1.0
CD A:LYS183 4.6 56.8 1.0
C A:GLU306 4.6 62.2 1.0
N A:GLU182 4.6 40.6 1.0
CZ A:PHE184 4.7 49.3 1.0
C A:ASN217 4.7 65.3 1.0
CA A:TRP255 4.8 50.6 1.0
N A:LEU179 4.8 22.6 1.0
N A:ASN304 4.8 49.5 1.0
CA A:GLN256 4.8 30.5 1.0
O A:THR252 4.9 38.9 1.0
CA A:LEU179 4.9 22.6 1.0
N A:ASP248 4.9 22.1 1.0
CB A:LYS183 4.9 56.8 1.0
O7 A:NAG803 4.9 63.9 0.5
CG A:ASP213 4.9 47.1 1.0
CG A:PRO253 4.9 55.7 1.0
OD1 A:ASP213 5.0 47.1 1.0
C A:ILE159 5.0 86.8 1.0
CB A:GLU157 5.0 79.2 1.0

Calcium binding site 6 out of 36 in 1q5b

Go back to Calcium Binding Sites List in 1q5b
Calcium binding site 6 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca910

b:10.5
occ:1.00
 OD1 A:ASN304 0.8 57.1 1.0
ND2 A:ASN217 0.8 53.4 1.0
CG A:ASN304 1.0 57.1 1.0
OD1 A:ASP248 1.2 28.0 1.0
N A:ASN217 1.4 65.3 1.0
ND2 A:ASN304 1.4 57.1 1.0
O A:GLN256 1.6 30.5 1.0
CA A:ASN304 1.7 49.5 1.0
CB A:ASN304 1.7 57.1 1.0
CG A:ASN217 1.9 53.4 1.0
CB A:ASN217 1.9 53.4 1.0
N A:ALA305 2.0 99.8 1.0
CA A:ASN217 2.0 65.3 1.0
OE2 A:GLU182 2.0 17.1 1.0
O3 A:NAG803 2.1 63.9 0.5
CG2 A:VAL258 2.1 48.4 1.0
OD2 A:ASP180 2.1 24.0 1.0
O A:ASN217 2.1 65.3 1.0
C A:ASN304 2.1 49.5 1.0
OD2 A:ASP246 2.2 13.3 1.0
CG A:ASP248 2.2 28.0 1.0
OD2 A:ASP248 2.2 28.0 1.0
OE1 A:GLN256 2.2 100.0 1.0
O A:ALA254 2.4 24.4 1.0
C A:ASP216 2.4 48.2 1.0
OD1 A:ASN215 2.4 28.6 1.0
CB A:ASP216 2.4 10.1 1.0
NZ A:LYS183 2.6 56.8 1.0
OD1 A:ASN217 2.6 53.4 1.0
CA A:CA909 2.6 12.9 1.0
C A:ASN217 2.7 65.3 1.0
OD1 A:ASP246 2.7 13.3 1.0
C A:GLN256 2.8 30.5 1.0
C A:ALA254 2.8 24.4 1.0
CG A:ASP180 2.9 24.0 1.0
CG A:ASP246 2.9 13.3 1.0
CA A:ALA305 2.9 99.8 1.0
CA A:ASP216 3.0 48.2 1.0
N A:ASN304 3.0 49.5 1.0
O A:PRO253 3.0 55.7 1.0
CD A:GLU182 3.1 17.1 1.0
CA A:ALA254 3.1 24.4 1.0
CB A:ALA305 3.2 99.8 1.0
CD A:LYS183 3.2 56.8 1.0
N A:ASP216 3.2 48.2 1.0
C3 A:NAG803 3.2 63.9 0.5
O A:ASP216 3.2 48.2 1.0
C4 A:NAG803 3.3 63.9 0.5
OE2 A:GLU157 3.3 79.2 1.0
O A:ASN304 3.3 49.5 1.0
CG A:ASP216 3.3 10.1 1.0
CE A:LYS183 3.3 56.8 1.0
CD A:GLN256 3.3 100.0 1.0
O4 A:NAG803 3.4 63.9 0.5
O A:PRO158 3.4 43.1 1.0
OD1 A:ASP180 3.4 24.0 1.0
CB A:ASP248 3.4 28.0 1.0
O7 A:NAG803 3.4 63.9 0.5
N A:TRP255 3.4 50.6 1.0
CB A:VAL258 3.4 48.4 1.0
CG A:ASN215 3.5 28.6 1.0
OD1 A:ASP216 3.5 10.1 1.0
O A:GLU303 3.5 54.6 1.0
C A:ASN215 3.6 34.3 1.0
O A:ALA257 3.6 51.8 1.0
C A:ALA257 3.6 51.8 1.0
C2 A:NAG803 3.6 63.9 0.5
CB A:ASP180 3.6 24.0 1.0
CA A:GLN256 3.7 30.5 1.0
C A:GLU303 3.7 54.6 1.0
N A:GLN256 3.7 30.5 1.0
CG A:GLU182 3.7 17.1 1.0
CB A:GLN256 3.8 100.0 1.0
N A:ALA257 3.8 51.8 1.0
N A:ALA218 3.8 45.7 1.0
N A:VAL258 3.8 61.4 1.0
C A:PRO253 3.8 55.7 1.0
CB A:ALA254 3.9 24.4 1.0
CA A:PRO158 3.9 43.1 1.0
NE2 A:GLN256 3.9 100.0 1.0
CA A:ALA257 3.9 51.8 1.0
CA A:ASN215 3.9 34.3 1.0
CA A:VAL258 4.0 61.4 1.0
N A:ASP248 4.0 22.1 1.0
ND2 A:ASN215 4.0 28.6 1.0
CB A:PRO158 4.0 43.1 1.0
CB A:GLU182 4.0 17.1 1.0
O A:ASN215 4.0 34.3 1.0
CA A:CA908 4.0 10.5 1.0
CG A:PRO158 4.0 43.1 1.0
N A:ALA254 4.1 24.4 1.0
CA A:TRP255 4.1 50.6 1.0
OD2 A:ASP216 4.1 10.1 1.0
CG1 A:VAL258 4.1 48.4 1.0
OE1 A:GLU182 4.1 17.1 1.0
CG A:LYS183 4.2 56.8 1.0
C A:PRO158 4.2 43.1 1.0
O A:ALA214 4.2 30.5 1.0
O3 A:NDG903 4.2 56.2 0.5
C7 A:NAG803 4.2 63.9 0.5
O4 A:NDG903 4.3 56.2 0.5
CE2 A:PHE184 4.3 49.3 1.0
C A:TRP255 4.3 50.6 1.0
CA A:ASP248 4.3 22.1 1.0
C A:ALA305 4.3 99.8 1.0
CG A:GLN256 4.3 100.0 1.0
CB A:ASP246 4.4 13.3 1.0
N2 A:NAG803 4.4 63.9 0.5
CD A:GLU157 4.5 79.2 1.0
CB A:ASN215 4.5 28.6 1.0
CA A:ALA218 4.5 45.7 1.0
O6 A:NAG803 4.6 63.9 0.5
CB A:LYS183 4.6 56.8 1.0
C5 A:NAG803 4.6 63.9 0.5
CG A:GLU157 4.6 79.2 1.0
N A:GLU306 4.6 62.2 1.0
CG A:PRO219 4.7 52.0 1.0
O5 A:NAG803 4.7 63.9 0.5
CZ A:PHE184 4.7 49.3 1.0
C1 A:NAG803 4.8 63.9 0.5
N A:LEU247 4.8 48.5 1.0
C A:LEU247 4.8 48.5 1.0
CE1 A:PHE308 4.8 0.0 1.0
OE1 A:GLU119 4.8 8.7 1.0
CA A:PRO253 4.9 55.7 1.0
C A:ALA218 5.0 45.7 1.0
N A:PRO158 5.0 43.1 1.0

Calcium binding site 7 out of 36 in 1q5b

Go back to Calcium Binding Sites List in 1q5b
Calcium binding site 7 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca911

b:37.4
occ:1.00
 N A:LYS402 0.4 0.0 1.0
CA A:SER441 0.5 0.0 1.0
OG1 A:THR425 0.6 99.7 1.0
CG2 A:THR425 0.6 99.7 1.0
CB A:THR425 0.6 99.7 1.0
OG1 A:THR407 0.9 99.3 1.0
CB A:THR407 0.9 99.3 1.0
SD A:MET447 0.9 57.0 1.0
O A:PHE290 1.0 52.9 1.0
O A:VAL401 1.0 83.5 1.0
C A:VAL401 1.0 83.5 1.0
CG2 A:THR407 1.1 99.3 1.0
C A:PHE290 1.2 52.9 1.0
CD A:PRO442 1.2 82.0 1.0
N A:SER441 1.2 0.0 1.0
O A:NDG811 1.3 0.0 0.8
O3 A:NAG807 1.4 62.6 0.5
C A:SER441 1.4 0.0 1.0
CE A:MET447 1.4 57.0 1.0
CA A:PHE290 1.4 52.9 1.0
CA A:LYS402 1.5 0.0 1.0
OG1 A:THR405 1.6 0.0 1.0
N A:PRO442 1.6 82.0 1.0
C1 A:NDG811 1.6 0.0 0.8
CG A:GLN455 1.7 97.8 1.0
N2 A:NAG807 1.7 62.6 0.5
CD1 A:LEU457 1.7 65.7 1.0
O A:LYS294 1.7 0.0 1.0
OE1 A:GLN501 1.7 86.9 1.0
OE2 A:GLU328 1.8 0.0 1.0
CA A:THR425 1.8 64.5 1.0
OG1 A:THR322 1.8 99.7 1.0
C1 A:NAG808 1.8 83.7 0.5
CB A:GLN455 1.9 97.8 1.0
CG A:GLN501 1.9 86.9 1.0
OE2 A:GLU291 1.9 52.9 1.0
N A:THR425 1.9 64.5 1.0
CD A:GLN501 1.9 86.9 1.0
CB A:SER441 1.9 0.0 1.0
C7 A:NAG807 2.0 62.6 0.5
CE2 A:PHE445 2.0 0.0 1.0
O A:THR423 2.1 91.3 1.0
OE1 A:GLU232 2.1 49.7 1.0
CG A:LYS294 2.1 100.0 1.0
C3 A:NAG807 2.1 62.6 0.5
OE2 A:GLU232 2.1 49.7 1.0
C A:PRO440 2.1 75.5 1.0
CZ A:PHE445 2.1 0.0 1.0
N A:PHE290 2.2 52.9 1.0
C2 A:NAG807 2.2 62.6 0.5
CG A:PRO442 2.2 82.0 1.0
O5 A:NAG808 2.2 83.7 0.5
CD A:GLU232 2.2 49.7 1.0
CA A:LYS294 2.3 0.0 1.0
CA A:VAL401 2.3 83.5 1.0
O7 A:NAG808 2.3 83.7 0.5
CA A:THR407 2.3 0.0 1.0
CB A:VAL323 2.3 37.3 1.0
O A:PRO442 2.3 82.0 1.0
N A:GLU291 2.3 99.8 1.0
O A:SER441 2.4 0.0 1.0
C A:LYS294 2.4 0.0 1.0
O A:PRO440 2.4 75.5 1.0
N A:VAL323 2.4 0.0 1.0
OG A:SER441 2.4 0.0 1.0
O A:ASP289 2.4 0.0 1.0
CE1 A:PHE445 2.4 0.0 1.0
CG A:PRO452 2.4 99.8 1.0
C8 A:NAG807 2.5 62.6 0.5
CG A:MET447 2.5 57.0 1.0
C5 A:NDG811 2.5 0.0 0.8
CA A:THR322 2.5 85.2 1.0
O7 A:NAG807 2.5 62.6 0.5
CB A:LYS402 2.5 100.0 1.0
C A:LYS402 2.5 0.0 1.0
CG A:LEU457 2.5 65.7 1.0
CD1 A:PHE445 2.6 0.0 1.0
CB A:THR322 2.6 99.7 1.0
N A:THR407 2.6 0.0 1.0
O A:ARG293 2.6 59.5 1.0
CB A:LYS294 2.7 100.0 1.0
C A:ASP289 2.7 0.0 1.0
CG2 A:THR322 2.7 99.7 1.0
CG2 A:THR320 2.7 82.8 1.0
NE2 A:GLN501 2.7 86.9 1.0
CD2 A:PHE445 2.7 0.0 1.0
CA A:PRO442 2.8 82.0 1.0
CD A:PRO452 2.8 99.8 1.0
O A:LYS402 2.8 0.0 1.0
O A:TYR400 2.8 0.0 1.0
O A:VAL323 2.8 0.0 1.0
CB A:GLN501 2.8 86.9 1.0
CA A:GLY424 2.8 56.9 1.0
O A:VAL321 2.8 0.0 1.0
OD2 A:ASP289 2.9 99.7 1.0
CB A:PHE290 2.9 99.0 1.0
C A:THR425 2.9 64.5 1.0
CD A:GLN455 2.9 97.8 1.0
CB A:PRO452 2.9 99.8 1.0
CD A:GLU291 2.9 52.9 1.0
CB A:THR405 2.9 0.0 1.0
C A:GLY424 2.9 56.9 1.0
CD A:GLU328 2.9 0.0 1.0
CG2 A:VAL323 2.9 37.3 1.0
CA A:VAL323 3.0 0.0 1.0
CB A:LEU457 3.0 65.7 1.0
C A:PRO442 3.0 82.0 1.0
C2 A:NDG811 3.0 0.0 0.8
CG A:PHE445 3.0 0.0 1.0
CG1 A:VAL323 3.0 37.3 1.0
CG A:PRO498 3.0 0.0 1.0
C7 A:NAG808 3.1 83.7 0.5
CG A:LYS402 3.1 100.0 1.0
OG A:SER460 3.1 76.5 1.0
C A:THR423 3.1 91.3 1.0
CG A:GLU232 3.1 49.7 1.0
CB A:PRO442 3.1 82.0 1.0
O A:ASP449 3.1 0.0 1.0
O A:THR405 3.2 0.0 1.0
C A:THR322 3.2 85.2 1.0
C2 A:NAG808 3.2 83.7 0.5
CA A:GLN501 3.2 0.0 1.0
C A:THR405 3.2 0.0 1.0
N A:TYR406 3.2 96.1 1.0
NE2 A:GLN455 3.2 97.8 1.0
CD A:PRO498 3.2 0.0 1.0
CG2 A:THR405 3.2 0.0 1.0
C6 A:NDG811 3.2 0.0 0.8
O A:ASN403 3.2 0.0 1.0
N A:VAL401 3.2 83.5 1.0
N A:LEU426 3.3 0.0 1.0
C A:VAL323 3.3 0.0 1.0
CB A:VAL401 3.3 92.7 1.0
O A:VAL456 3.3 100.0 1.0
CA A:LEU457 3.3 0.0 1.0
N A:ASN403 3.3 0.0 1.0
C A:THR407 3.4 0.0 1.0
CA A:GLN455 3.4 0.0 1.0
C A:TYR400 3.4 0.0 1.0
C A:TYR406 3.4 96.1 1.0
N A:THR322 3.4 85.2 1.0
CD A:LYS294 3.4 100.0 1.0
CG1 A:VAL401 3.4 92.7 1.0
C A:VAL321 3.5 0.0 1.0
CA A:PRO440 3.5 75.5 1.0
O A:GLN450 3.5 0.0 1.0
N A:GLY424 3.5 56.9 1.0
N A:LYS294 3.5 0.0 1.0
N2 A:NAG808 3.5 83.7 0.5
CB A:PHE331 3.5 96.7 1.0
CA A:TYR406 3.5 96.1 1.0
C5 A:NAG808 3.5 83.7 0.5
C4 A:NAG807 3.5 62.6 0.5
OE1 A:GLU291 3.5 52.9 1.0
OE1 A:GLU328 3.5 0.0 1.0
C A:ARG293 3.5 59.5 1.0
O A:GLN501 3.5 0.0 1.0
CA A:GLU291 3.5 99.8 1.0
O A:THR425 3.6 64.5 1.0
C8 A:NAG810 3.6 79.0 0.5
C3 A:NDG811 3.6 0.0 0.8
CD2 A:PHE290 3.6 99.0 1.0
CB A:MET447 3.6 57.0 1.0
C4 A:NDG811 3.6 0.0 0.8
C1 A:NAG807 3.6 62.6 0.5
CB A:SER460 3.6 76.5 1.0
O A:GLN455 3.6 0.0 1.0
CA A:THR405 3.7 0.0 1.0
O6 A:NDG811 3.7 0.0 0.8
CA A:CA915 3.7 70.2 1.0
N A:GLN295 3.7 91.9 1.0
N2 A:NDG811 3.7 0.0 0.8
OE1 A:GLN455 3.7 97.8 1.0
C A:GLN501 3.7 0.0 1.0
CG A:PHE290 3.7 99.0 1.0
O4 A:NAG807 3.7 62.6 0.5
CE A:LYS294 3.8 100.0 1.0
C A:GLN455 3.8 0.0 1.0
CB A:PRO359 3.8 92.7 1.0
N A:VAL408 3.8 99.0 1.0
CG A:GLU328 3.8 0.0 1.0
CE A:LYS402 3.9 100.0 1.0
C8 A:NAG808 3.9 83.7 0.5
O A:THR407 3.9 0.0 1.0
CB A:PRO440 3.9 75.5 1.0
O A:LEU496 3.9 89.3 1.0
CA A:ASP289 3.9 0.0 1.0
CD2 A:LEU496 3.9 80.3 1.0
CD2 A:LEU457 3.9 65.7 1.0
CG A:GLU291 3.9 52.9 1.0
CB A:GLU291 3.9 52.9 1.0
CZ3 A:TRP483 3.9 0.0 1.0
N A:THR458 4.0 89.0 1.0
CD2 A:PHE331 4.0 96.7 1.0
CG A:GLN295 4.0 77.0 1.0
CB A:GLU328 4.0 0.0 1.0
CG1 A:ILE409 4.0 52.3 1.0
O A:GLY424 4.0 56.9 1.0
O A:CYS448 4.0 0.0 1.0
N A:GLN455 4.0 0.0 1.0
C A:VAL456 4.0 100.0 1.0
O A:SER398 4.0 0.0 1.0
CB A:THR320 4.0 82.8 1.0
CB A:PHE445 4.0 0.0 1.0
CB A:ALA335 4.0 97.4 1.0
CG A:ASP289 4.0 99.7 1.0
CA A:GLN295 4.1 91.9 1.0
CG A:PRO359 4.1 92.7 1.0
CB A:PRO498 4.1 0.0 1.0
CG A:PHE331 4.1 96.7 1.0
O A:THR458 4.1 89.0 1.0
O A:GLN500 4.1 0.0 1.0
C3 A:NAG808 4.1 83.7 0.5
CB A:LEU496 4.1 80.3 1.0
NZ A:LYS294 4.1 100.0 1.0
N A:LEU457 4.2 0.0 1.0
N A:THR405 4.2 0.0 1.0
N A:PRO452 4.2 99.8 1.0
CD A:LYS402 4.2 100.0 1.0
O A:LEU426 4.2 0.0 1.0
O A:VAL408 4.2 99.0 1.0
O A:VAL439 4.2 53.0 1.0
OG1 A:THR458 4.2 69.7 1.0
O A:TYR406 4.2 96.1 1.0
CA A:PRO452 4.2 99.8 1.0
C A:ASN403 4.3 0.0 1.0
CH2 A:TRP483 4.3 0.0 1.0
C A:LEU426 4.3 0.0 1.0
CG1 A:VAL525 4.3 54.0 1.0
C A:GLN450 4.3 0.0 1.0
N A:ARG443 4.3 83.8 1.0
C6 A:NAG808 4.3 83.7 0.5
O A:ALA329 4.3 93.5 1.0
CG2 A:ILE409 4.3 52.3 1.0
CB A:GLU232 4.3 49.7 1.0
NH1 A:ARG443 4.4 95.2 1.0
C A:ASP449 4.4 0.0 1.0
C A:LEU457 4.4 0.0 1.0
O A:THR322 4.4 85.2 1.0
CA A:THR423 4.4 91.3 1.0
OG1 A:THR320 4.4 82.8 1.0
CA A:LEU426 4.4 0.0 1.0
OD2 A:ASP325 4.4 64.5 1.0
N A:LEU292 4.4 96.5 1.0
C4 A:NAG808 4.4 83.7 0.5
CE2 A:PHE290 4.4 99.0 1.0
N A:GLN501 4.4 0.0 1.0
O5 A:NAG807 4.5 62.6 0.5
O A:GLU324 4.5 0.0 1.0
O7 A:NAG810 4.5 79.0 0.5
O7 A:NDG811 4.5 0.0 0.8
C A:GLU291 4.5 99.8 1.0
N A:ILE427 4.5 0.0 1.0
C7 A:NDG811 4.6 0.0 0.8
CA A:ASN403 4.6 0.0 1.0
C7 A:NAG810 4.6 79.0 0.5
CB A:ILE427 4.6 0.0 1.0
CG A:LEU496 4.6 80.3 1.0
N A:PRO440 4.6 75.5 1.0
O A:GLU399 4.6 97.0 1.0
NE2 A:GLN295 4.6 77.0 1.0
CA A:ALA335 4.6 97.4 1.0
N A:GLU324 4.6 0.0 1.0
C5 A:NAG807 4.6 62.6 0.5
CD1 A:ILE409 4.6 52.3 1.0
N A:THR423 4.6 91.3 1.0
CG2 A:THR227 4.6 92.2 1.0
CG2 A:VAL401 4.6 92.7 1.0
O4 A:NDG811 4.6 0.0 0.8
CA A:PHE331 4.7 76.3 1.0
C8 A:NAG812 4.7 67.8 0.5
CA A:ILE427 4.7 0.0 1.0
C A:VAL408 4.7 99.0 1.0
N A:VAL456 4.7 100.0 1.0
N A:PRO498 4.7 0.0 1.0
CB A:ASP289 4.7 99.7 1.0
CD1 A:PHE290 4.7 99.0 1.0
CE2 A:PHE331 4.7 96.7 1.0
C A:SER398 4.7 0.0 1.0
N A:LEU502 4.7 0.0 1.0
CA A:MET447 4.7 86.8 1.0
CA A:VAL321 4.7 0.0 1.0
N A:ASP289 4.7 0.0 1.0
O A:GLU397 4.8 0.0 1.0
CB A:GLN295 4.8 77.0 1.0
CD A:GLN295 4.8 77.0 1.0
C A:THR458 4.8 89.0 1.0
O6 A:NAG808 4.8 83.7 0.5
C A:LEU496 4.8 89.3 1.0
O A:GLU453 4.8 0.0 1.0
O A:PRO452 4.8 99.8 1.0
C A:VAL439 4.8 53.0 1.0
CA A:GLN450 4.8 0.0 1.0
CB A:THR423 4.8 95.4 1.0
CD A:PRO359 4.8 92.7 1.0
O A:PRO330 4.8 43.9 1.0
CA A:TYR400 4.9 0.0 1.0
N A:VAL321 4.9 0.0 1.0
C A:GLN500 4.9 0.0 1.0
CB A:ILE409 4.9 52.3 1.0
C A:PRO452 4.9 99.8 1.0
N A:ARG293 4.9 59.5 1.0
CA A:VAL408 4.9 99.0 1.0
CA A:ARG293 4.9 59.5 1.0
C A:GLU399 4.9 97.0 1.0
CB A:TYR406 4.9 84.1 1.0
N A:ASN451 4.9 99.7 1.0
CA A:ASN451 4.9 99.7 1.0
OD1 A:ASP289 4.9 99.7 1.0
CA A:THR458 4.9 89.0 1.0
O A:LEU502 5.0 0.0 1.0
C A:THR320 5.0 81.8 1.0
O3 A:NDG811 5.0 0.0 0.8

Calcium binding site 8 out of 36 in 1q5b

Go back to Calcium Binding Sites List in 1q5b
Calcium binding site 8 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca912

b:90.9
occ:1.00
 O A:VAL524 0.6 0.0 1.0
CD1 A:TYR507 0.6 0.0 1.0
OD1 A:ASN327 0.6 0.0 1.0
N A:VAL525 0.7 0.0 1.0
CA A:MET410 0.7 74.1 1.0
CD A:PRO330 0.8 43.9 1.0
CD2 A:LEU502 0.8 100.0 1.0
C A:VAL524 0.9 0.0 1.0
CE1 A:TYR507 0.9 0.0 1.0
CG A:ASN327 0.9 0.0 1.0
OH A:TYR406 1.0 84.1 1.0
C A:MET410 1.0 74.1 1.0
CG1 A:VAL408 1.0 56.5 1.0
CG A:PRO330 1.0 43.9 1.0
CB A:MET410 1.0 99.6 1.0
N A:LEU411 1.1 61.9 1.0
CZ A:TYR406 1.2 84.1 1.0
CG1 A:VAL412 1.3 42.6 1.0
CA A:LEU411 1.3 61.9 1.0
N A:VAL412 1.3 0.0 1.0
C A:LEU411 1.3 61.9 1.0
ND2 A:ASN327 1.5 0.0 1.0
CA A:VAL525 1.6 0.0 1.0
C A:VAL525 1.6 0.0 1.0
CA A:SER508 1.7 0.0 1.0
C A:SER508 1.7 0.0 1.0
O A:ILE409 1.7 99.5 1.0
CG A:LEU502 1.7 100.0 1.0
O A:VAL412 1.8 0.0 1.0
CE2 A:TYR406 1.8 84.1 1.0
NE2 A:GLN362 1.8 0.0 1.0
CD1 A:LEU502 1.8 100.0 1.0
CZ A:TYR507 1.8 0.0 1.0
OD2 A:ASP358 1.8 96.2 1.0
CG A:MET410 1.8 99.6 1.0
N A:MET410 1.9 74.1 1.0
CG A:TYR507 1.9 0.0 1.0
CA A:VAL412 1.9 0.0 1.0
O A:VAL525 1.9 0.0 1.0
O A:TYR507 1.9 0.0 1.0
CB A:VAL412 2.0 42.6 1.0
O A:MET410 2.0 74.1 1.0
N A:ILE509 2.0 85.9 1.0
CB A:ASN327 2.0 0.0 1.0
N A:ASN526 2.0 0.0 1.0
O A:SER508 2.0 0.0 1.0
CZ A:PHE332 2.1 99.8 1.0
N A:PRO330 2.1 43.9 1.0
O A:GLU328 2.1 0.0 1.0
OD1 A:ASP360 2.1 90.8 1.0
O A:LEU411 2.2 61.9 1.0
C A:VAL412 2.2 0.0 1.0
C A:ILE409 2.2 99.5 1.0
CE1 A:TYR406 2.2 84.1 1.0
CB A:LEU502 2.2 100.0 1.0
CB A:ASP414 2.2 82.2 1.0
OD1 A:ASP325 2.2 64.5 1.0
CG2 A:VAL408 2.2 56.5 1.0
CG A:ASP414 2.3 82.2 1.0
CA A:VAL524 2.3 0.0 1.0
CB A:VAL408 2.3 56.5 1.0
OD2 A:ASP414 2.3 82.2 1.0
C A:TYR507 2.3 0.0 1.0
CB A:PRO330 2.4 43.9 1.0
N A:LYS503 2.4 0.0 1.0
CD A:GLN362 2.4 0.0 1.0
N A:SER508 2.4 0.0 1.0
CE2 A:TYR507 2.4 0.0 1.0
OE1 A:GLN365 2.4 0.0 1.0
CZ2 A:TRP378 2.5 0.0 1.0
CG A:ASP360 2.5 90.8 1.0
CD2 A:TYR507 2.5 0.0 1.0
NE A:ARG443 2.6 95.2 1.0
CA A:LEU502 2.6 0.0 1.0
CA A:ASN526 2.6 0.0 1.0
OE1 A:GLN362 2.6 0.0 1.0
CB A:SER508 2.6 76.8 1.0
CH2 A:TRP378 2.7 0.0 1.0
OD1 A:ASP414 2.7 82.2 1.0
O A:GLY422 2.7 72.5 1.0
CG2 A:THR523 2.7 0.0 1.0
CD1 A:TYR400 2.7 0.0 1.0
CB A:SER398 2.7 0.0 1.0
CA A:ASN327 2.8 0.0 1.0
CB A:LEU411 2.8 78.1 1.0
CB A:VAL525 2.8 54.0 1.0
CA A:PRO330 2.8 43.9 1.0
CG2 A:VAL412 2.9 42.6 1.0
OH A:TYR507 2.9 0.0 1.0
CE1 A:PHE332 2.9 99.8 1.0
CG2 A:VAL525 2.9 54.0 1.0
C A:ALA329 2.9 93.5 1.0
CG A:LYS503 2.9 100.0 1.0
CG A:ASP358 3.0 96.2 1.0
O A:PRO375 3.0 0.0 1.0
CB A:ASP360 3.0 90.8 1.0
CG2 A:ILE509 3.0 50.8 1.0
C A:LEU502 3.0 0.0 1.0
CB A:ASP325 3.0 64.5 1.0
N A:GLU399 3.1 97.0 1.0
CE2 A:PHE332 3.1 99.8 1.0
N A:GLY422 3.1 72.5 1.0
OD2 A:ASP360 3.1 90.8 1.0
CG A:ASP325 3.1 64.5 1.0
CB A:VAL524 3.1 0.0 1.0
CA A:ALA329 3.1 93.5 1.0
NH2 A:ARG443 3.1 95.2 1.0
CB A:TYR507 3.1 0.0 1.0
CD2 A:TYR406 3.1 84.1 1.0
SD A:MET410 3.1 99.6 1.0
N A:VAL524 3.1 0.0 1.0
O A:PHE370 3.1 63.2 1.0
C A:GLU328 3.2 0.0 1.0
OD1 A:ASP358 3.2 96.2 1.0
N A:THR413 3.2 99.8 1.0
OG A:SER398 3.2 0.0 1.0
CA A:GLY422 3.2 72.5 1.0
CA A:ASP414 3.2 82.6 1.0
OD1 A:ASN526 3.2 97.7 1.0
CA A:ILE509 3.3 85.9 1.0
N A:ASP414 3.3 82.6 1.0
CD1 A:TYR406 3.3 84.1 1.0
N A:ILE409 3.3 99.5 1.0
CD A:ARG443 3.3 95.2 1.0
CG2 A:ILE371 3.3 0.0 1.0
N A:GLY372 3.3 0.0 1.0
C A:ASN526 3.3 0.0 1.0
CZ3 A:TRP378 3.4 0.0 1.0
CB A:GLU399 3.4 0.0 1.0
CA A:VAL408 3.4 99.0 1.0
C A:ASN327 3.4 0.0 1.0
CE2 A:TRP378 3.4 0.0 1.0
CZ A:ARG443 3.4 95.2 1.0
CB A:LYS503 3.4 100.0 1.0
CG A:GLN362 3.4 0.0 1.0
CA A:ILE409 3.4 99.5 1.0
CD1 A:LEU379 3.5 0.0 1.0
CA A:LYS503 3.5 0.0 1.0
CD A:GLN365 3.5 0.0 1.0
O A:PRO330 3.5 43.9 1.0
N A:GLU328 3.5 0.0 1.0
CZ2 A:TRP483 3.5 0.0 1.0
CE1 A:TYR400 3.5 0.0 1.0
CA A:TYR507 3.5 0.0 1.0
O A:ILE509 3.5 85.9 1.0
CG A:TYR400 3.5 0.0 1.0
NE2 A:GLN365 3.5 0.0 1.0
C A:GLY422 3.5 72.5 1.0
C A:PRO330 3.6 43.9 1.0
N A:ALA527 3.6 90.4 1.0
CB A:ILE509 3.6 50.8 1.0
C A:SER398 3.6 0.0 1.0
O A:ASN373 3.6 0.0 1.0
CG2 A:VAL524 3.6 0.0 1.0
C A:VAL408 3.6 99.0 1.0
CA A:ILE371 3.6 92.8 1.0
CA A:SER398 3.6 0.0 1.0
C A:THR421 3.6 0.0 1.0
CA A:THR413 3.7 99.8 1.0
N A:ASN373 3.7 0.0 1.0
N A:ALA329 3.7 93.5 1.0
C A:PRO375 3.7 0.0 1.0
CG A:TYR406 3.7 84.1 1.0
CB A:TYR400 3.7 0.0 1.0
C A:THR413 3.7 99.8 1.0
CB A:ALA527 3.8 90.4 1.0
CG A:ARG443 3.8 95.2 1.0
CB A:GLN362 3.8 0.0 1.0
CG A:LEU411 3.8 78.1 1.0
C A:THR523 3.8 0.0 1.0
N A:ASN327 3.8 0.0 1.0
CE3 A:TRP378 3.8 0.0 1.0
CB A:ASN526 3.8 97.7 1.0
CA A:GLU399 3.8 97.0 1.0
N A:LEU502 3.8 0.0 1.0
O A:ALA376 3.8 81.9 1.0
C A:ILE371 3.8 92.8 1.0
CD A:LYS503 3.9 100.0 1.0
OG A:SER508 3.9 76.8 1.0
NE1 A:TRP483 3.9 0.0 1.0
CD2 A:LEU411 3.9 78.1 1.0
CD1 A:ILE371 3.9 0.0 1.0
CD2 A:TRP378 3.9 0.0 1.0
CG A:ASN526 4.0 97.7 1.0
C A:ILE509 4.0 85.9 1.0
O A:ALA329 4.0 93.5 1.0
CB A:ILE371 4.0 0.0 1.0
CG1 A:ILE371 4.0 0.0 1.0
CG1 A:VAL525 4.0 54.0 1.0
O A:ASN526 4.0 0.0 1.0
CA A:GLU328 4.0 0.0 1.0
O A:ASN327 4.0 0.0 1.0
CD1 A:LEU522 4.1 0.0 1.0
CB A:THR523 4.1 0.0 1.0
CE2 A:TRP483 4.1 0.0 1.0
CE A:LYS503 4.1 100.0 1.0
C A:ASN373 4.1 0.0 1.0
O A:THR523 4.1 0.0 1.0
O A:THR421 4.1 0.0 1.0
N A:TYR400 4.1 0.0 1.0
CB A:ALA329 4.1 93.5 1.0
CA A:THR421 4.1 0.0 1.0
N A:SER398 4.1 0.0 1.0
N A:THR421 4.1 0.0 1.0
CD1 A:PHE332 4.1 99.8 1.0
CB A:ASP358 4.1 96.2 1.0
OD2 A:ASP325 4.1 64.5 1.0
CE A:MET410 4.1 99.6 1.0
CD2 A:LEU379 4.1 0.0 1.0
C8 A:NAG904 4.2 27.2 0.5
NZ A:LYS294 4.2 100.0 1.0
NE1 A:TRP378 4.2 0.0 1.0
CA A:GLY372 4.2 0.0 1.0
C A:GLY420 4.3 93.4 1.0
CB A:PRO375 4.3 0.0 1.0
CA A:ASP325 4.3 0.0 1.0
CG1 A:VAL524 4.3 0.0 1.0
O A:LEU502 4.3 0.0 1.0
C A:PHE370 4.3 63.2 1.0
O A:VAL419 4.3 0.0 1.0
CD2 A:LEU522 4.3 0.0 1.0
CG1 A:VAL439 4.3 0.0 1.0
O A:VAL408 4.3 99.0 1.0
CA A:GLY420 4.3 93.4 1.0
N A:ALA376 4.3 81.9 1.0
C A:VAL326 4.3 0.0 1.0
CA A:ASN373 4.3 0.0 1.0
CD2 A:PHE332 4.3 99.8 1.0
C A:GLY372 4.4 0.0 1.0
CA A:ASP374 4.4 0.0 1.0
CA A:PRO375 4.4 0.0 1.0
O A:GLY424 4.4 56.9 1.0
O A:VAL326 4.4 0.0 1.0
N A:PRO375 4.4 0.0 1.0
C A:ASP374 4.4 0.0 1.0
CA A:ALA527 4.4 90.4 1.0
C A:ASP325 4.4 0.0 1.0
N A:TYR507 4.4 0.0 1.0
O A:ARG443 4.4 83.8 1.0
O A:SER398 4.4 0.0 1.0
O A:ASP325 4.4 0.0 1.0
CG A:LEU379 4.4 0.0 1.0
C A:ALA376 4.5 81.9 1.0
O A:THR413 4.5 99.8 1.0
N A:PHE331 4.5 76.3 1.0
CB A:ASN373 4.5 93.9 1.0
N A:ASP325 4.5 0.0 1.0
N A:ASP374 4.5 0.0 1.0
CA A:ASP360 4.5 65.5 1.0
CG A:GLU399 4.5 0.0 1.0
O A:GLY420 4.5 93.4 1.0
O A:THR407 4.6 0.0 1.0
C A:ASP414 4.6 82.6 1.0
N A:VAL408 4.6 99.0 1.0
CB A:ARG443 4.6 95.2 1.0
CH2 A:TRP483 4.6 0.0 1.0
CD2 A:TYR400 4.6 0.0 1.0
CA A:THR523 4.6 0.0 1.0
CB A:ILE409 4.6 52.3 1.0
O A:ASP395 4.6 76.5 1.0
C A:LYS503 4.6 0.0 1.0
N A:ILE371 4.7 92.8 1.0
CZ A:TYR400 4.7 0.0 1.0
O A:LYS503 4.7 0.0 1.0
C A:GLN501 4.7 0.0 1.0
CA A:CA915 4.7 70.2 1.0
NH1 A:ARG443 4.7 95.2 1.0
C A:GLU399 4.7 97.0 1.0
CA A:ALA376 4.7 81.9 1.0
O A:ILE371 4.7 92.8 1.0
CG A:GLN365 4.7 0.0 1.0
O A:LEU481 4.7 0.0 1.0
CG A:PHE332 4.8 99.8 1.0
CA A:TYR400 4.8 0.0 1.0
O A:ASP374 4.8 0.0 1.0
N A:THR423 4.8 91.3 1.0
O A:GLN501 4.8 0.0 1.0
N A:GLY424 4.9 56.9 1.0
N A:ASP360 4.9 65.5 1.0
CG A:LEU522 4.9 0.0 1.0
O A:ALA527 4.9 90.4 1.0
N A:VAL326 4.9 0.0 1.0
CG A:PRO359 4.9 92.7 1.0
CG A:TRP378 4.9 0.0 1.0
CG2 A:VAL401 5.0 92.7 1.0
CB A:LEU367 5.0 55.1 1.0
C A:THR407 5.0 0.0 1.0

Calcium binding site 9 out of 36 in 1q5b

Go back to Calcium Binding Sites List in 1q5b
Calcium binding site 9 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca913

b:34.6
occ:1.00
 CD2 A:LEU354 0.4 26.1 1.0
CA A:VAL511 0.8 0.0 1.0
N A:LEU481 0.9 0.0 1.0
O A:TYR510 1.0 0.0 1.0
C A:VAL511 1.0 0.0 1.0
N A:THR482 1.1 0.0 1.0
O A:ALA356 1.1 52.5 1.0
O A:VAL511 1.1 0.0 1.0
CG A:LEU354 1.2 26.1 1.0
CD1 A:ILE352 1.2 72.5 1.0
C A:TYR510 1.3 0.0 1.0
N A:VAL511 1.3 0.0 1.0
N A:ALA356 1.3 52.5 1.0
CA A:ASN436 1.4 56.8 1.0
CB A:GLN363 1.4 0.0 1.0
CB A:LEU522 1.5 0.0 1.0
CB A:ASN436 1.5 72.3 1.0
N A:GLN362 1.5 0.0 1.0
CA A:ASP395 1.5 76.5 1.0
O A:GLY478 1.5 99.2 1.0
CG A:GLN363 1.5 0.0 1.0
C A:LEU481 1.6 0.0 1.0
CG A:ASN436 1.6 72.3 1.0
CA A:LEU522 1.7 0.0 1.0
C A:LYS361 1.7 71.2 1.0
CA A:ALA356 1.7 52.5 1.0
CD1 A:LEU428 1.8 63.9 1.0
CD1 A:LEU354 1.8 26.1 1.0
N A:LEU522 1.8 0.0 1.0
O A:LYS361 1.8 71.2 1.0
CA A:LEU481 1.8 0.0 1.0
N A:ASN436 1.8 56.8 1.0
C A:ALA356 1.9 52.5 1.0
O A:GLN521 1.9 0.0 1.0
N A:ARG396 1.9 89.7 1.0
OE1 A:GLU343 1.9 72.9 1.0
CB A:ALA356 1.9 52.5 1.0
CD A:GLU343 2.0 72.9 1.0
C A:ASP395 2.0 76.5 1.0
OD1 A:ASN436 2.0 72.3 1.0
N A:GLN363 2.0 0.0 1.0
CG A:ASP435 2.0 64.9 1.0
CB A:VAL511 2.0 48.3 1.0
CB A:ASP435 2.0 64.9 1.0
C A:ASP480 2.0 0.0 1.0
C A:VAL355 2.1 83.7 1.0
N A:ASP395 2.1 76.5 1.0
CA A:LYS361 2.1 71.2 1.0
CG1 A:ILE352 2.1 72.5 1.0
ND2 A:ASN436 2.1 72.3 1.0
CB A:LEU354 2.1 26.1 1.0
OD2 A:ASP395 2.1 88.0 1.0
C A:GLN521 2.2 0.0 1.0
CG A:ASP395 2.2 88.0 1.0
N A:LEU512 2.3 39.9 1.0
OE2 A:GLU343 2.3 72.9 1.0
CD2 A:LEU394 2.3 96.3 1.0
N A:GLY437 2.3 93.1 1.0
CA A:THR482 2.3 0.0 1.0
OD1 A:ASP435 2.3 64.9 1.0
O A:PRO520 2.4 95.2 1.0
CA A:GLN362 2.4 0.0 1.0
NZ A:LYS361 2.4 99.8 1.0
CB A:PRO520 2.4 95.2 1.0
OD2 A:ASP435 2.4 64.9 1.0
CD A:GLN500 2.4 100.0 1.0
OG1 A:THR482 2.4 0.0 1.0
O A:ASP360 2.4 65.5 1.0
CG A:LEU522 2.4 0.0 1.0
CA A:GLN363 2.4 0.0 1.0
CB A:LEU394 2.4 96.3 1.0
CG2 A:VAL388 2.4 72.7 1.0
OE1 A:GLU397 2.4 75.5 1.0
CG A:GLU343 2.4 72.9 1.0
NE2 A:GLN500 2.4 100.0 1.0
OD1 A:ASP395 2.5 88.0 1.0
CD A:GLN363 2.5 0.0 1.0
C A:GLY478 2.5 99.2 1.0
CG A:GLN500 2.5 100.0 1.0
C A:ASN436 2.5 56.8 1.0
CA A:VAL355 2.6 83.7 1.0
CD1 A:TRP483 2.6 0.0 1.0
CA A:TYR510 2.6 0.0 1.0
C A:LEU522 2.6 0.0 1.0
CB A:ASP395 2.6 88.0 1.0
CB A:LEU481 2.7 72.1 1.0
CD2 A:LEU475 2.7 54.0 1.0
N A:THR523 2.7 0.0 1.0
O A:VAL355 2.7 83.7 1.0
O A:LEU481 2.7 0.0 1.0
O A:GLY437 2.7 93.1 1.0
N A:GLN357 2.8 67.7 1.0
C A:LEU394 2.8 71.8 1.0
OE1 A:GLN363 2.8 0.0 1.0
CA A:GLN357 2.8 67.7 1.0
N A:ASP358 2.8 99.7 1.0
C A:GLN362 2.8 0.0 1.0
CB A:THR482 2.8 0.0 1.0
CA A:ASP480 2.8 0.0 1.0
OE1 A:GLN500 2.8 100.0 1.0
N A:TYR510 2.8 0.0 1.0
CG A:LYS361 2.9 99.8 1.0
CB A:LYS361 2.9 99.8 1.0
C A:ASP435 2.9 99.6 1.0
O A:PRO438 2.9 75.9 1.0
CG2 A:VAL511 3.0 48.3 1.0
CG1 A:VAL388 3.0 72.7 1.0
C A:PRO520 3.0 95.2 1.0
CB A:VAL388 3.0 72.7 1.0
N A:ASP480 3.0 0.0 1.0
N A:VAL355 3.0 83.7 1.0
O A:ASP480 3.0 0.0 1.0
N A:LYS361 3.1 71.2 1.0
CG1 A:VAL511 3.1 48.3 1.0
O A:ASP358 3.1 99.7 1.0
CA A:LEU512 3.1 39.9 1.0
CE2 A:TYR369 3.1 55.3 1.0
CG A:LEU394 3.1 96.3 1.0
CB A:TRP483 3.1 0.0 1.0
N A:GLN521 3.1 0.0 1.0
CE A:LYS361 3.1 99.8 1.0
CD1 A:ILE351 3.1 27.4 1.0
CG A:LEU428 3.2 63.9 1.0
CG1 A:ILE509 3.2 50.8 1.0
C A:THR482 3.2 0.0 1.0
C A:LEU354 3.2 62.9 1.0
O A:ASP395 3.2 76.5 1.0
CA A:GLY437 3.2 93.1 1.0
C A:ASP360 3.2 65.5 1.0
CG A:TRP483 3.2 0.0 1.0
CA A:ARG396 3.2 89.7 1.0
CA A:ASP435 3.2 99.6 1.0
C A:GLY437 3.2 93.1 1.0
CB A:GLU343 3.3 72.9 1.0
CG A:PRO520 3.3 95.2 1.0
CE A:MET410 3.3 99.6 1.0
O A:LEU394 3.3 71.8 1.0
CG1 A:VAL430 3.3 99.6 1.0
C A:GLN357 3.3 67.7 1.0
CD A:GLU397 3.3 75.5 1.0
OH A:TYR369 3.3 55.3 1.0
CB A:ILE352 3.3 72.5 1.0
NE2 A:GLN363 3.3 0.0 1.0
CA A:GLY478 3.4 99.2 1.0
CG A:GLU397 3.4 75.5 1.0
O A:THR523 3.4 0.0 1.0
CA A:GLN521 3.4 0.0 1.0
N A:TRP483 3.4 99.9 1.0
CA A:LEU394 3.4 71.8 1.0
CB A:ASP358 3.4 96.2 1.0
CD2 A:LEU522 3.4 0.0 1.0
CB A:GLU397 3.4 75.5 1.0
CG2 A:ILE351 3.4 27.4 1.0
CB A:LEU475 3.4 54.0 1.0
CA A:LEU354 3.4 62.9 1.0
C A:ILE509 3.4 85.9 1.0
N A:SER479 3.5 82.9 1.0
CA A:PRO520 3.5 95.2 1.0
O A:LEU522 3.5 0.0 1.0
CB A:TYR510 3.5 0.0 1.0
N A:GLU397 3.5 0.0 1.0
CB A:GLN500 3.6 100.0 1.0
O A:LEU354 3.6 62.9 1.0
CA A:LEU475 3.6 0.0 1.0
CD1 A:LEU522 3.6 0.0 1.0
C A:SER479 3.6 82.9 1.0
CG A:LEU475 3.7 54.0 1.0
CA A:CA916 3.7 85.4 1.0
CB A:GLN362 3.7 0.0 1.0
CA A:ASP358 3.7 99.7 1.0
C A:GLN363 3.7 0.0 1.0
O A:ASN436 3.7 56.8 1.0
O A:ASP435 3.7 99.6 1.0
NE1 A:TRP483 3.7 0.0 1.0
O A:SER474 3.8 99.2 1.0
CA A:SER479 3.8 82.9 1.0
CZ A:TYR369 3.8 55.3 1.0
O A:ILE509 3.8 85.9 1.0
CA A:THR523 3.8 0.0 1.0
CB A:VAL355 3.8 82.9 1.0
O A:THR482 3.8 0.0 1.0
CG2 A:VAL439 3.8 0.0 1.0
C A:ASP358 3.8 99.7 1.0
O A:ILE352 3.8 76.5 1.0
CA A:GLU343 3.9 0.0 1.0
CD1 A:LEU426 3.9 100.0 1.0
CD1 A:PHE332 3.9 99.8 1.0
OE1 A:GLN357 3.9 96.0 1.0
CD A:LYS361 3.9 99.8 1.0
CG A:LEU481 3.9 72.1 1.0
CD2 A:TYR369 3.9 55.3 1.0
CB A:LEU512 3.9 36.9 1.0
CB A:ARG396 3.9 100.0 1.0
O A:GLN362 3.9 0.0 1.0
CB A:LEU428 4.0 63.9 1.0
CZ3 A:TRP378 4.0 0.0 1.0
CA A:TRP483 4.0 99.9 1.0
C A:PRO438 4.0 75.9 1.0
C A:ARG396 4.0 89.7 1.0
CD2 A:LEU367 4.0 55.1 1.0
CD1 A:ILE509 4.0 50.8 1.0
CB A:ASP480 4.0 0.0 1.0
CG2 A:VAL430 4.0 99.6 1.0
CD2 A:LEU428 4.0 63.9 1.0
N A:SER476 4.0 99.4 1.0
O A:GLN363 4.1 0.0 1.0
CA A:ILE509 4.1 85.9 1.0
C A:THR523 4.1 0.0 1.0
CB A:GLN357 4.1 96.0 1.0
CG A:LEU426 4.1 100.0 1.0
CB A:ILE509 4.1 50.8 1.0
CD1 A:LEU481 4.1 72.1 1.0
CG2 A:ILE352 4.1 72.5 1.0
N A:ASP435 4.1 99.6 1.0
CB A:ILE351 4.1 27.4 1.0
CG1 A:VAL341 4.1 31.7 1.0
CE3 A:TRP378 4.1 0.0 1.0
C A:LEU512 4.2 39.9 1.0
N A:LEU354 4.2 62.9 1.0
O A:GLN357 4.2 67.7 1.0
CG2 A:THR482 4.2 0.0 1.0
C A:LEU475 4.2 0.0 1.0
N A:LEU513 4.2 0.0 1.0
N A:PRO438 4.2 75.9 1.0
CA A:GLU397 4.3 0.0 1.0
SD A:MET410 4.3 99.6 1.0
CD1 A:LEU475 4.3 54.0 1.0
CG2 A:VAL339 4.3 49.8 1.0
OD1 A:ASP480 4.3 0.0 1.0
OE2 A:GLU397 4.3 75.5 1.0
CB A:GLN521 4.3 0.0 1.0
OD1 A:ASP358 4.4 96.2 1.0
N A:GLY478 4.4 99.2 1.0
O A:SER479 4.4 82.9 1.0
CB A:VAL430 4.4 99.6 1.0
CG1 A:ILE351 4.4 27.4 1.0
CG A:GLN357 4.4 96.0 1.0
CD1 A:LEU394 4.5 96.3 1.0
CA A:PHE332 4.5 0.0 1.0
O A:PHE331 4.5 76.3 1.0
CA A:ILE352 4.5 76.5 1.0
CA A:VAL388 4.5 60.0 1.0
CD2 A:LEU426 4.5 100.0 1.0
CD2 A:TRP483 4.5 0.0 1.0
N A:LEU394 4.5 71.8 1.0
O A:PRO359 4.5 92.7 1.0
CG A:ASP358 4.5 96.2 1.0
CE1 A:PHE332 4.5 99.8 1.0
CD A:PRO520 4.6 95.2 1.0
CB A:PHE332 4.6 99.8 1.0
C A:ILE352 4.6 76.5 1.0
O A:TRP483 4.6 99.9 1.0
CA A:ASP360 4.6 65.5 1.0
N A:PRO520 4.6 95.2 1.0
CG A:PHE332 4.6 99.8 1.0
CH2 A:TRP378 4.6 0.0 1.0
O A:GLU343 4.7 0.0 1.0
CG A:ASP480 4.7 0.0 1.0
OD2 A:ASP463 4.7 90.9 1.0
CD2 A:LEU379 4.7 0.0 1.0
N A:GLU343 4.7 0.0 1.0
N A:ILE352 4.7 76.5 1.0
CA A:PRO438 4.7 75.9 1.0
CD A:GLN357 4.7 96.0 1.0
O A:GLY386 4.7 57.8 1.0
CE2 A:TRP483 4.8 0.0 1.0
N A:ILE364 4.8 0.0 1.0
C A:SER474 4.8 99.2 1.0
CG1 A:VAL355 4.8 82.9 1.0
C A:GLU343 4.8 0.0 1.0
C A:TRP483 4.8 99.9 1.0
CG A:GLN362 4.8 0.0 1.0
CB A:THR523 4.8 0.0 1.0
CG2 A:VAL355 4.8 82.9 1.0
N A:LEU475 4.8 0.0 1.0
N A:VAL388 4.9 60.0 1.0
CA A:GLN500 4.9 0.0 1.0
CG A:TYR510 4.9 0.0 1.0
C A:PRO359 4.9 92.7 1.0
CG2 A:VAL433 4.9 38.3 1.0
CB A:ALA462 5.0 0.0 1.0
N A:VAL439 5.0 53.0 1.0

Calcium binding site 10 out of 36 in 1q5b

Go back to Calcium Binding Sites List in 1q5b
Calcium binding site 10 out of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca914

b:69.9
occ:1.00
 CD A:ARG338 0.5 100.0 1.0
O A:VAL339 0.6 87.1 1.0
CA A:VAL339 0.6 87.1 1.0
NE2 A:GLN357 0.6 96.0 1.0
C A:LEU431 0.7 0.0 1.0
O A:LEU431 0.8 0.0 1.0
CA A:LEU431 0.9 0.0 1.0
CB A:LEU513 0.9 0.0 1.0
OD1 A:ASP432 0.9 99.7 1.0
N A:LEU431 0.9 0.0 1.0
C A:VAL339 0.9 87.1 1.0
OD1 A:ASP463 1.0 90.9 1.0
N A:VAL339 1.0 87.1 1.0
CG A:PRO438 1.0 75.9 1.0
CD A:PRO438 1.1 75.9 1.0
CG A:ASP463 1.1 90.9 1.0
CA A:ASP432 1.1 0.0 1.0
O A:VAL433 1.1 0.0 1.0
CG A:ARG338 1.2 100.0 1.0
CB A:VAL339 1.2 49.8 1.0
CA A:LEU513 1.3 0.0 1.0
CG A:ASP432 1.4 99.7 1.0
OD2 A:ASP515 1.4 0.0 1.0
O A:VAL341 1.4 89.4 1.0
O A:HIS429 1.4 0.0 1.0
NE A:ARG338 1.4 100.0 1.0
N A:VAL341 1.4 89.4 1.0
N A:SER474 1.4 99.2 1.0
CB A:ARG338 1.5 100.0 1.0
N A:ASP432 1.5 0.0 1.0
CD A:GLN357 1.5 96.0 1.0
N A:VAL433 1.6 0.0 1.0
CD2 A:LEU513 1.6 0.0 1.0
CZ A:ARG338 1.6 100.0 1.0
OD1 A:ASN434 1.7 68.5 1.0
NH1 A:ARG338 1.7 100.0 1.0
OD2 A:ASP463 1.7 90.9 1.0
CB A:LEU431 1.7 65.8 1.0
CG2 A:VAL339 1.8 49.8 1.0
CG1 A:VAL473 1.8 100.0 1.0
CA A:VAL473 1.9 0.0 1.0
C A:VAL473 1.9 0.0 1.0
CB A:ASP463 1.9 90.9 1.0
N A:SER514 1.9 49.0 1.0
C A:ASP432 1.9 0.0 1.0
O A:TRP483 1.9 99.9 1.0
CG A:LEU513 1.9 0.0 1.0
OD2 A:ASP432 1.9 99.7 1.0
C A:VAL430 2.0 0.0 1.0
CB A:ASP432 2.0 99.7 1.0
C A:LEU513 2.0 0.0 1.0
CD1 A:LEU475 2.1 54.0 1.0
O A:LEU512 2.1 39.9 1.0
C A:ARG338 2.1 0.0 1.0
N A:ASP340 2.1 57.6 1.0
C A:VAL433 2.2 0.0 1.0
OD2 A:ASP461 2.2 0.0 1.0
OD1 A:ASP461 2.2 0.0 1.0
CG2 A:VAL333 2.2 68.3 1.0
OE1 A:GLN357 2.2 96.0 1.0
CG2 A:THR499 2.2 85.4 1.0
CD A:LYS361 2.3 99.8 1.0
C A:ASP340 2.3 57.6 1.0
CG A:GLN357 2.3 96.0 1.0
C A:VAL341 2.3 89.4 1.0
CB A:PRO438 2.3 75.9 1.0
CG A:ASP515 2.3 0.0 1.0
CA A:ASN434 2.4 0.0 1.0
CA A:VAL341 2.4 89.4 1.0
CB A:VAL473 2.4 100.0 1.0
CG1 A:VAL339 2.4 49.8 1.0
CG A:LEU475 2.4 54.0 1.0
CA A:CA916 2.4 85.4 1.0
CG A:ASN434 2.4 68.5 1.0
N A:LEU513 2.4 0.0 1.0
NH2 A:ARG338 2.5 100.0 1.0
CA A:ASP340 2.5 57.6 1.0
N A:PRO438 2.5 75.9 1.0
CG2 A:ILE352 2.5 72.5 1.0
CA A:SER474 2.6 99.2 1.0
CA A:VAL430 2.6 0.0 1.0
CA A:ARG338 2.6 0.0 1.0
CB A:ALA485 2.6 95.4 1.0
C A:HIS429 2.6 0.0 1.0
O A:ASN436 2.7 56.8 1.0
O A:LYS472 2.7 0.0 1.0
CG2 A:VAL355 2.7 82.9 1.0
CG1 A:VAL341 2.7 31.7 1.0
CG A:LEU431 2.7 65.8 1.0
OD1 A:ASP480 2.7 0.0 1.0
CA A:VAL433 2.7 0.0 1.0
CG A:ASP461 2.7 0.0 1.0
C A:LEU512 2.7 39.9 1.0
OG1 A:THR499 2.8 85.4 1.0
O A:VAL430 2.8 0.0 1.0
CA A:SER514 2.9 49.0 1.0
C A:SER474 2.9 99.2 1.0
CB A:ASP515 2.9 0.0 1.0
N A:ASN434 2.9 0.0 1.0
CA A:GLY437 2.9 93.1 1.0
C A:SER514 3.0 49.0 1.0
C A:TRP483 3.0 99.9 1.0
O A:ARG338 3.0 0.0 1.0
NE A:ARG396 3.0 100.0 1.0
CB A:VAL341 3.0 31.7 1.0
O A:VAL473 3.0 0.0 1.0
CD A:ARG396 3.0 100.0 1.0
CE A:LYS361 3.0 99.8 1.0
O A:ASN467 3.0 44.5 1.0
CA A:LYS484 3.0 99.9 1.0
CD1 A:LEU513 3.1 0.0 1.0
ND2 A:ASN434 3.1 68.5 1.0
CB A:ASN434 3.1 68.5 1.0
O A:ASP432 3.1 0.0 1.0
OE2 A:GLU397 3.1 75.5 1.0
O A:SER474 3.1 99.2 1.0
O A:SER514 3.1 49.0 1.0
N A:VAL473 3.1 0.0 1.0
CG2 A:VAL433 3.1 38.3 1.0
N A:ASP435 3.2 99.6 1.0
OD1 A:ASP515 3.2 0.0 1.0
CB A:THR499 3.2 85.4 1.0
C A:ASN434 3.2 0.0 1.0
O A:LEU513 3.2 0.0 1.0
CG1 A:VAL336 3.2 47.5 1.0
N A:VAL430 3.2 0.0 1.0
CG A:LYS361 3.2 99.8 1.0
N A:LEU475 3.2 0.0 1.0
CA A:ASP463 3.2 0.0 1.0
CA A:PRO438 3.2 75.9 1.0
CB A:LEU475 3.3 54.0 1.0
C A:GLY437 3.3 93.1 1.0
N A:ALA485 3.3 95.4 1.0
N A:ASP515 3.3 99.8 1.0
N A:SER342 3.3 72.5 1.0
C A:LYS472 3.4 0.0 1.0
O A:SER479 3.4 82.9 1.0
CA A:SER342 3.4 72.5 1.0
N A:LYS484 3.4 99.9 1.0
CG1 A:VAL333 3.4 68.3 1.0
O A:ASP340 3.4 57.6 1.0
CD1 A:LEU431 3.4 65.8 1.0
CB A:LYS484 3.5 100.0 1.0
CB A:VAL333 3.5 68.3 1.0
O A:VAL355 3.5 83.7 1.0
CD2 A:TYR471 3.5 0.0 1.0
CG2 A:VAL473 3.5 100.0 1.0
OD1 A:ASN467 3.5 73.4 1.0
CE2 A:TYR471 3.5 0.0 1.0
N A:HIS429 3.6 0.0 1.0
CB A:ASN467 3.6 73.4 1.0
CB A:VAL433 3.6 38.3 1.0
CD2 A:LEU475 3.6 54.0 1.0
C A:ASN436 3.6 56.8 1.0
N A:ARG338 3.6 0.0 1.0
CA A:HIS429 3.7 0.0 1.0
CG1 A:VAL430 3.7 99.6 1.0
CB A:ARG396 3.7 100.0 1.0
CB A:GLN357 3.7 96.0 1.0
CA A:ALA485 3.8 95.4 1.0
CG A:ASP480 3.8 0.0 1.0
CD2 A:LEU431 3.8 65.8 1.0
CB A:VAL430 3.8 99.6 1.0
NE2 A:GLN500 3.8 100.0 1.0
NZ A:LYS361 3.8 99.8 1.0
OD2 A:ASP435 3.9 64.9 1.0
CB A:SER474 3.9 77.0 1.0
CA A:ASP515 3.9 99.8 1.0
CB A:LYS361 3.9 99.8 1.0
CB A:ILE352 3.9 72.5 1.0
N A:GLY437 3.9 93.1 1.0
CG A:LYS484 3.9 100.0 1.0
CB A:HIS429 3.9 69.8 1.0
CB A:VAL355 3.9 82.9 1.0
N A:GLU343 3.9 0.0 1.0
N A:ASP463 4.0 0.0 1.0
C A:LYS484 4.0 99.9 1.0
CG A:ARG396 4.0 100.0 1.0
CA A:LEU475 4.0 0.0 1.0
CG A:ASN467 4.0 73.4 1.0
CD A:PRO334 4.0 53.3 1.0
N A:ILE464 4.0 88.0 1.0
CB A:ASP340 4.0 82.5 1.0
C A:SER342 4.1 72.5 1.0
CD A:GLU397 4.1 75.5 1.0
CA A:LEU512 4.1 39.9 1.0
N A:VAL355 4.1 83.7 1.0
CG2 A:ILE464 4.1 100.0 1.0
OD2 A:ASP480 4.1 0.0 1.0
N A:TRP483 4.1 99.9 1.0
CZ A:ARG396 4.1 100.0 1.0
NH2 A:ARG396 4.1 100.0 1.0
C A:VAL355 4.1 83.7 1.0
C A:ASN467 4.1 44.5 1.0
N A:LEU512 4.1 39.9 1.0
CB A:LEU428 4.1 63.9 1.0
CB A:ASP461 4.2 0.0 1.0
C A:LEU428 4.2 0.0 1.0
C A:ASP463 4.2 0.0 1.0
O A:THR499 4.2 0.0 1.0
CB A:SER514 4.2 0.0 1.0
O A:ASN434 4.2 0.0 1.0
OG A:SER474 4.2 77.0 1.0
CB A:VAL336 4.3 47.5 1.0
CA A:TRP483 4.3 99.9 1.0
OG1 A:THR482 4.3 0.0 1.0
CA A:LEU428 4.3 0.0 1.0
OE1 A:GLU397 4.3 75.5 1.0
OE1 A:GLU343 4.3 72.9 1.0
CA A:VAL355 4.4 83.7 1.0
CB A:LEU354 4.4 26.1 1.0
CB A:SER342 4.4 49.2 1.0
CG2 A:VAL341 4.4 31.7 1.0
O A:PRO520 4.4 95.2 1.0
C A:PRO438 4.4 75.9 1.0
CD A:LYS484 4.4 100.0 1.0
ND1 A:HIS429 4.4 69.8 1.0
CA A:LEU354 4.4 62.9 1.0
OG A:SER514 4.5 0.0 1.0
O A:GLY437 4.5 93.1 1.0
O A:GLN517 4.5 0.0 1.0
C A:SER479 4.5 82.9 1.0
OD1 A:ASP340 4.5 82.5 1.0
N A:ASN436 4.5 56.8 1.0
CA A:ASP435 4.5 99.6 1.0
CG2 A:VAL336 4.5 47.5 1.0
C A:ASP435 4.5 99.6 1.0
CB A:GLU343 4.5 72.9 1.0
O A:SER353 4.5 79.6 1.0
CA A:ASN467 4.6 44.5 1.0
CA A:THR499 4.6 0.0 1.0
CG2 A:THR482 4.6 0.0 1.0
O A:PRO438 4.6 75.9 1.0
CD A:GLN500 4.7 100.0 1.0
N A:VAL333 4.7 82.6 1.0
CG A:TYR471 4.7 0.0 1.0
N A:LYS472 4.7 0.0 1.0
O A:ILE464 4.7 88.0 1.0
CG1 A:VAL511 4.7 48.3 1.0
CG2 A:ILE351 4.7 27.4 1.0
CG2 A:THR468 4.7 0.0 1.0
CE A:MET494 4.7 85.0 1.0
CA A:VAL333 4.7 82.6 1.0
N A:PRO520 4.7 95.2 1.0
CA A:ASN436 4.7 56.8 1.0
CZ A:TYR471 4.7 0.0 1.0
CA A:ILE352 4.7 76.5 1.0
CG A:HIS429 4.8 69.8 1.0
CG A:PRO334 4.8 53.3 1.0
C A:THR499 4.8 0.0 1.0
CA A:LYS472 4.8 0.0 1.0
CA A:GLN357 4.8 67.7 1.0
O A:ASP435 4.8 99.6 1.0
CG A:ASP435 4.8 64.9 1.0
CA A:THR482 4.8 0.0 1.0
CG A:ASP340 4.8 82.5 1.0
C A:SER337 4.8 0.0 1.0
O A:LEU428 4.8 0.0 1.0
CB A:TYR471 4.9 0.0 1.0
CG2 A:VAL430 4.9 99.6 1.0
CG A:LEU428 4.9 63.9 1.0
O A:ILE351 4.9 42.0 1.0
CD1 A:ILE352 4.9 72.5 1.0
O A:SER342 4.9 72.5 1.0
OH A:TYR471 4.9 0.0 1.0
CG1 A:ILE352 4.9 72.5 1.0
CB A:ASN518 4.9 88.3 1.0
N A:ALA356 4.9 52.5 1.0
CA A:GLU343 4.9 0.0 1.0
CG1 A:VAL433 4.9 38.3 1.0
CB A:TRP483 5.0 0.0 1.0
C A:LEU354 5.0 62.9 1.0
O A:ALA356 5.0 52.5 1.0
CB A:LEU512 5.0 36.9 1.0
C A:ALA356 5.0 52.5 1.0
CB A:THR482 5.0 0.0 1.0

Reference:

W.He, P.Cowin, D.L.Stokes. Untangling Desmosomal Knots with Electron Tomography Science V. 302 109 2003.
ISSN: ISSN 0036-8075
PubMed: 14526082
DOI: 10.1126/SCIENCE.1086957
Page generated: Thu Jul 11 13:59:27 2024

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