Calcium in PDB 1q5b: Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
36;
Binding sites:
The binding sites of Calcium atom in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
(pdb code 1q5b). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 36 binding sites of Calcium where determined in the
Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography, PDB code: 1q5b:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 1 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca905
b:22.4
occ:1.00
|
CA
|
A:ASP134
|
0.6
|
47.4
|
1.0
|
CG
|
A:ASP134
|
0.7
|
51.6
|
1.0
|
CG
|
A:ASN102
|
0.8
|
55.7
|
1.0
|
CB
|
A:ASP134
|
0.9
|
51.6
|
1.0
|
OD1
|
A:ASP134
|
1.0
|
51.6
|
1.0
|
N
|
A:ASP134
|
1.1
|
47.4
|
1.0
|
OD1
|
A:ASN102
|
1.1
|
55.7
|
1.0
|
ND2
|
A:ASN102
|
1.2
|
55.7
|
1.0
|
C
|
A:ASP134
|
1.3
|
47.4
|
1.0
|
CB
|
A:THR133
|
1.3
|
57.5
|
1.0
|
CG2
|
A:THR133
|
1.3
|
57.5
|
1.0
|
OD2
|
A:ASP134
|
1.4
|
51.6
|
1.0
|
O
|
A:ASP134
|
1.6
|
47.4
|
1.0
|
CB
|
A:ASN102
|
1.7
|
55.7
|
1.0
|
C
|
A:THR133
|
2.1
|
87.0
|
1.0
|
O
|
A:ASN104
|
2.3
|
47.5
|
1.0
|
O
|
A:ASN143
|
2.3
|
41.2
|
1.0
|
OD1
|
A:ASP195
|
2.4
|
34.4
|
1.0
|
CA
|
A:THR133
|
2.4
|
87.0
|
1.0
|
OG1
|
A:THR133
|
2.4
|
57.5
|
1.0
|
N
|
A:GLU135
|
2.5
|
26.0
|
1.0
|
O
|
A:ASN102
|
2.7
|
33.5
|
1.0
|
CA
|
A:ASN102
|
2.7
|
33.5
|
1.0
|
OD2
|
A:ASP136
|
2.7
|
42.7
|
1.0
|
OD2
|
A:ASP195
|
2.8
|
34.4
|
1.0
|
CG
|
A:ASP195
|
3.0
|
34.4
|
1.0
|
O
|
A:THR133
|
3.1
|
87.0
|
1.0
|
C
|
A:ASN102
|
3.1
|
33.5
|
1.0
|
C
|
A:ASN104
|
3.4
|
47.5
|
1.0
|
C
|
A:ASN143
|
3.5
|
41.2
|
1.0
|
CA
|
A:GLU135
|
3.6
|
26.0
|
1.0
|
CG
|
A:ASP136
|
3.7
|
42.7
|
1.0
|
N
|
A:ASP136
|
3.7
|
14.1
|
1.0
|
N
|
A:THR133
|
3.8
|
87.0
|
1.0
|
CB
|
A:ASP136
|
3.8
|
42.7
|
1.0
|
CA
|
A:GLY144
|
3.9
|
31.3
|
1.0
|
N
|
A:ASN102
|
4.0
|
33.5
|
1.0
|
N
|
A:ASP103
|
4.0
|
73.5
|
1.0
|
N
|
A:ASN104
|
4.0
|
47.5
|
1.0
|
CD1
|
A:LEU201
|
4.1
|
44.2
|
1.0
|
CA
|
A:ASN104
|
4.1
|
47.5
|
1.0
|
CB
|
A:ASN104
|
4.1
|
79.0
|
1.0
|
CA
|
A:ASN143
|
4.1
|
41.2
|
1.0
|
C
|
A:GLU135
|
4.3
|
26.0
|
1.0
|
N
|
A:GLY144
|
4.3
|
31.3
|
1.0
|
CB
|
A:ASN143
|
4.4
|
34.4
|
1.0
|
O
|
A:ALA132
|
4.4
|
55.7
|
1.0
|
CA
|
A:PRO106
|
4.5
|
47.0
|
1.0
|
C
|
A:ALA132
|
4.5
|
55.7
|
1.0
|
O
|
A:GLY144
|
4.5
|
31.3
|
1.0
|
CB
|
A:ASP195
|
4.5
|
34.4
|
1.0
|
CA
|
A:ASP136
|
4.5
|
14.1
|
1.0
|
N
|
A:ARG105
|
4.6
|
90.2
|
1.0
|
C
|
A:GLY144
|
4.6
|
31.3
|
1.0
|
C
|
A:ARG105
|
4.6
|
90.2
|
1.0
|
N
|
A:PRO106
|
4.7
|
47.0
|
1.0
|
CB
|
A:PRO106
|
4.7
|
47.0
|
1.0
|
CD1
|
A:LEU146
|
4.7
|
22.8
|
1.0
|
O
|
A:ARG105
|
4.7
|
90.2
|
1.0
|
CG
|
A:LEU201
|
4.7
|
44.2
|
1.0
|
CB
|
A:GLU135
|
4.8
|
99.1
|
1.0
|
OD1
|
A:ASP136
|
4.9
|
42.7
|
1.0
|
CA
|
A:ARG105
|
4.9
|
90.2
|
1.0
|
O
|
A:ASP136
|
5.0
|
14.1
|
1.0
|
CA
|
A:ASP103
|
5.0
|
73.5
|
1.0
|
CD2
|
A:LEU146
|
5.0
|
22.8
|
1.0
|
C
|
A:ASP103
|
5.0
|
73.5
|
1.0
|
|
Calcium binding site 2 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 2 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca906
b:5.0
occ:1.00
|
OE1
|
A:GLN101
|
0.4
|
71.4
|
1.0
|
CD
|
A:GLN101
|
0.9
|
71.4
|
1.0
|
CB
|
A:GLN101
|
1.0
|
71.4
|
1.0
|
OE2
|
A:GLU69
|
1.1
|
15.8
|
1.0
|
O
|
A:GLU135
|
1.4
|
26.0
|
1.0
|
O
|
A:GLN101
|
1.5
|
43.4
|
1.0
|
CG
|
A:GLN101
|
1.6
|
71.4
|
1.0
|
NE2
|
A:GLN101
|
1.8
|
71.4
|
1.0
|
CA
|
A:GLN101
|
1.8
|
43.4
|
1.0
|
OD1
|
A:ASP136
|
1.9
|
42.7
|
1.0
|
OE1
|
A:GLU11
|
1.9
|
21.0
|
1.0
|
C
|
A:GLN101
|
1.9
|
43.4
|
1.0
|
CD
|
A:GLU69
|
2.2
|
15.8
|
1.0
|
N
|
A:GLN101
|
2.2
|
43.4
|
1.0
|
C
|
A:GLU135
|
2.4
|
26.0
|
1.0
|
OD2
|
A:ASP103
|
2.5
|
33.9
|
1.0
|
OD1
|
A:ASP103
|
2.6
|
33.9
|
1.0
|
OD2
|
A:ASP100
|
2.7
|
34.3
|
1.0
|
CG
|
A:ASP103
|
2.8
|
33.9
|
1.0
|
CA
|
A:ASP136
|
2.8
|
14.1
|
1.0
|
OE1
|
A:GLU69
|
2.8
|
15.8
|
1.0
|
CG
|
A:GLU69
|
2.9
|
15.8
|
1.0
|
CG
|
A:GLU135
|
2.9
|
99.1
|
1.0
|
N
|
A:ASN102
|
3.0
|
33.5
|
1.0
|
N
|
A:ASP136
|
3.0
|
14.1
|
1.0
|
CG
|
A:ASP136
|
3.0
|
42.7
|
1.0
|
CB
|
A:GLU135
|
3.0
|
99.1
|
1.0
|
OD1
|
A:ASP100
|
3.1
|
34.3
|
1.0
|
CD
|
A:GLU11
|
3.1
|
21.0
|
1.0
|
CA
|
A:GLU135
|
3.1
|
26.0
|
1.0
|
NE
|
A:ARG68
|
3.2
|
39.4
|
1.0
|
CG
|
A:ASP100
|
3.2
|
34.3
|
1.0
|
NH2
|
A:ARG68
|
3.3
|
39.4
|
1.0
|
CB
|
A:ASP136
|
3.4
|
42.7
|
1.0
|
OE2
|
A:GLU11
|
3.5
|
21.0
|
1.0
|
C
|
A:ASP100
|
3.5
|
42.9
|
1.0
|
N
|
A:ASP103
|
3.5
|
73.5
|
1.0
|
C
|
A:ASP136
|
3.6
|
14.1
|
1.0
|
CD
|
A:GLU135
|
3.7
|
99.1
|
1.0
|
ND2
|
A:ASN104
|
3.8
|
79.0
|
1.0
|
CZ
|
A:ARG68
|
3.9
|
39.4
|
1.0
|
CB
|
A:ASP103
|
3.9
|
33.9
|
1.0
|
CD
|
A:ARG68
|
3.9
|
39.4
|
1.0
|
OD2
|
A:ASP136
|
4.0
|
42.7
|
1.0
|
CG
|
A:ARG68
|
4.0
|
39.4
|
1.0
|
OE2
|
A:GLU135
|
4.0
|
99.1
|
1.0
|
O
|
A:GLU11
|
4.0
|
30.1
|
1.0
|
CA
|
A:ASN102
|
4.0
|
33.5
|
1.0
|
CG
|
A:GLU11
|
4.0
|
21.0
|
1.0
|
C
|
A:ASN102
|
4.1
|
33.5
|
1.0
|
CA
|
A:ASP100
|
4.1
|
42.9
|
1.0
|
N
|
A:ASP137
|
4.1
|
49.5
|
1.0
|
O
|
A:ASP136
|
4.2
|
14.1
|
1.0
|
CB
|
A:ASP100
|
4.2
|
34.3
|
1.0
|
O
|
A:ASP100
|
4.3
|
42.9
|
1.0
|
CB
|
A:GLU69
|
4.3
|
15.8
|
1.0
|
OE1
|
A:GLU135
|
4.3
|
99.1
|
1.0
|
CA
|
A:ASP103
|
4.4
|
73.5
|
1.0
|
OD1
|
A:ASN12
|
4.4
|
43.9
|
1.0
|
CA
|
A:CA907
|
4.5
|
15.4
|
1.0
|
N
|
A:GLU135
|
4.6
|
26.0
|
1.0
|
CB
|
A:GLU11
|
4.6
|
21.0
|
1.0
|
CA
|
A:GLU69
|
4.6
|
33.9
|
1.0
|
CB
|
A:ASN12
|
4.7
|
43.9
|
1.0
|
O
|
A:ASN12
|
4.8
|
34.7
|
1.0
|
CG
|
A:ASN104
|
4.8
|
79.0
|
1.0
|
C
|
A:GLU11
|
4.9
|
30.1
|
1.0
|
OG
|
A:SER10
|
4.9
|
46.9
|
1.0
|
N
|
A:GLU69
|
4.9
|
33.9
|
1.0
|
CB
|
A:ASN104
|
5.0
|
79.0
|
1.0
|
O
|
A:ASN102
|
5.0
|
33.5
|
1.0
|
|
Calcium binding site 3 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 3 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca907
b:15.4
occ:1.00
|
OD1
|
A:ASN12
|
0.8
|
43.9
|
1.0
|
CG
|
A:ASN12
|
0.9
|
43.9
|
1.0
|
CB
|
A:ASN12
|
1.4
|
43.9
|
1.0
|
CB
|
A:GLU69
|
1.4
|
15.8
|
1.0
|
CG
|
A:GLU69
|
1.7
|
15.8
|
1.0
|
OD2
|
A:ASP67
|
1.8
|
32.7
|
1.0
|
OE1
|
A:GLU69
|
1.8
|
15.8
|
1.0
|
O
|
A:ASN12
|
2.0
|
34.7
|
1.0
|
OD1
|
A:ASP103
|
2.1
|
33.9
|
1.0
|
ND2
|
A:ASN12
|
2.2
|
43.9
|
1.0
|
CD
|
A:GLU69
|
2.5
|
15.8
|
1.0
|
OE2
|
A:GLU135
|
2.5
|
99.1
|
1.0
|
CG
|
A:ASP67
|
2.5
|
32.7
|
1.0
|
OD1
|
A:ASP67
|
2.6
|
32.7
|
1.0
|
CA
|
A:ASN12
|
2.7
|
34.7
|
1.0
|
OE2
|
A:GLU11
|
2.7
|
21.0
|
1.0
|
OE1
|
A:GLU135
|
2.7
|
99.1
|
1.0
|
CG
|
A:ASP103
|
2.8
|
33.9
|
1.0
|
C
|
A:ASN12
|
2.9
|
34.7
|
1.0
|
CA
|
A:GLU69
|
2.9
|
33.9
|
1.0
|
CD
|
A:GLU135
|
3.0
|
99.1
|
1.0
|
CD
|
A:GLU11
|
3.2
|
21.0
|
1.0
|
CB
|
A:ASP103
|
3.4
|
33.9
|
1.0
|
CG
|
A:GLU11
|
3.4
|
21.0
|
1.0
|
O
|
A:GLU69
|
3.5
|
33.9
|
1.0
|
CB
|
A:ARG14
|
3.5
|
98.9
|
1.0
|
OD2
|
A:ASP103
|
3.5
|
33.9
|
1.0
|
C
|
A:GLU69
|
3.5
|
33.9
|
1.0
|
ND2
|
A:ASN104
|
3.5
|
79.0
|
1.0
|
N
|
A:ASN12
|
3.5
|
34.7
|
1.0
|
O
|
A:ARG14
|
3.7
|
49.8
|
1.0
|
N
|
A:GLU69
|
3.7
|
33.9
|
1.0
|
OE2
|
A:GLU69
|
3.7
|
15.8
|
1.0
|
O
|
A:GLU11
|
3.7
|
30.1
|
1.0
|
CB
|
A:ASP67
|
3.8
|
32.7
|
1.0
|
OE1
|
A:GLU11
|
3.9
|
21.0
|
1.0
|
C
|
A:GLU11
|
4.0
|
30.1
|
1.0
|
CG
|
A:GLU135
|
4.1
|
99.1
|
1.0
|
CG
|
A:ARG14
|
4.2
|
98.9
|
1.0
|
N
|
A:GLU13
|
4.2
|
53.1
|
1.0
|
CA
|
A:ASP67
|
4.2
|
43.9
|
1.0
|
OE1
|
A:GLN101
|
4.2
|
71.4
|
1.0
|
N
|
A:ARG14
|
4.3
|
49.8
|
1.0
|
N
|
A:GLU70
|
4.4
|
47.5
|
1.0
|
CA
|
A:ARG14
|
4.4
|
49.8
|
1.0
|
C
|
A:GLU13
|
4.4
|
53.1
|
1.0
|
CA
|
A:CA906
|
4.5
|
5.0
|
1.0
|
CB
|
A:GLU135
|
4.6
|
99.1
|
1.0
|
O
|
A:LEU66
|
4.6
|
41.6
|
1.0
|
C
|
A:ARG14
|
4.6
|
49.8
|
1.0
|
O
|
A:GLU13
|
4.6
|
53.1
|
1.0
|
CA
|
A:GLU13
|
4.6
|
53.1
|
1.0
|
CG
|
A:ASN104
|
4.7
|
79.0
|
1.0
|
C
|
A:ASP67
|
4.8
|
43.9
|
1.0
|
CB
|
A:GLU11
|
4.8
|
21.0
|
1.0
|
N
|
A:ARG68
|
4.8
|
51.6
|
1.0
|
CA
|
A:ASP103
|
4.9
|
73.5
|
1.0
|
CD
|
A:GLN101
|
4.9
|
71.4
|
1.0
|
|
Calcium binding site 4 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 4 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca908
b:10.5
occ:1.00
|
C
|
A:PRO253
|
0.6
|
55.7
|
1.0
|
OE1
|
A:GLU182
|
0.7
|
17.1
|
1.0
|
N
|
A:ALA254
|
0.7
|
24.4
|
1.0
|
CB
|
A:ALA254
|
0.9
|
24.4
|
1.0
|
CA
|
A:PRO253
|
0.9
|
55.7
|
1.0
|
N
|
A:PRO158
|
1.1
|
43.1
|
1.0
|
CB
|
A:ASP180
|
1.1
|
24.0
|
1.0
|
OD1
|
A:ASP180
|
1.2
|
24.0
|
1.0
|
CA
|
A:ALA254
|
1.2
|
24.4
|
1.0
|
CA
|
A:PRO158
|
1.3
|
43.1
|
1.0
|
CG
|
A:ASP180
|
1.4
|
24.0
|
1.0
|
CG
|
A:PRO158
|
1.4
|
43.1
|
1.0
|
CD
|
A:GLU182
|
1.5
|
17.1
|
1.0
|
CD
|
A:PRO158
|
1.5
|
43.1
|
1.0
|
CA
|
A:ASP180
|
1.5
|
28.1
|
1.0
|
CB
|
A:ASP248
|
1.6
|
28.0
|
1.0
|
O
|
A:PRO253
|
1.7
|
55.7
|
1.0
|
C
|
A:PRO158
|
1.8
|
43.1
|
1.0
|
C
|
A:ASP180
|
1.8
|
28.1
|
1.0
|
OD2
|
A:ASP248
|
1.9
|
28.0
|
1.0
|
O
|
A:PRO158
|
1.9
|
43.1
|
1.0
|
OD2
|
A:ASP213
|
2.0
|
47.1
|
1.0
|
C
|
A:ALA254
|
2.0
|
24.4
|
1.0
|
O
|
A:ALA214
|
2.0
|
30.5
|
1.0
|
CG
|
A:ASP248
|
2.0
|
28.0
|
1.0
|
OE1
|
A:GLU119
|
2.0
|
8.7
|
1.0
|
CD2
|
A:PHE184
|
2.1
|
49.3
|
1.0
|
N
|
A:PRO253
|
2.1
|
55.7
|
1.0
|
C
|
A:GLU157
|
2.1
|
70.7
|
1.0
|
CA
|
A:GLU157
|
2.1
|
70.7
|
1.0
|
CB
|
A:PRO253
|
2.2
|
55.7
|
1.0
|
CE2
|
A:PHE184
|
2.2
|
49.3
|
1.0
|
OE2
|
A:GLU182
|
2.2
|
17.1
|
1.0
|
OD1
|
A:ASP216
|
2.2
|
10.1
|
1.0
|
OE2
|
A:GLU119
|
2.2
|
8.7
|
1.0
|
N
|
A:ARG181
|
2.3
|
27.8
|
1.0
|
O
|
A:ASP180
|
2.3
|
28.1
|
1.0
|
OD2
|
A:ASP180
|
2.3
|
24.0
|
1.0
|
CB
|
A:PRO158
|
2.3
|
43.1
|
1.0
|
N
|
A:TRP255
|
2.4
|
50.6
|
1.0
|
N
|
A:GLU182
|
2.4
|
40.6
|
1.0
|
OE2
|
A:GLU157
|
2.5
|
79.2
|
1.0
|
N
|
A:ASP180
|
2.5
|
28.1
|
1.0
|
CG
|
A:GLU157
|
2.6
|
79.2
|
1.0
|
CA
|
A:CA909
|
2.6
|
12.9
|
1.0
|
CD
|
A:GLU119
|
2.7
|
8.7
|
1.0
|
O
|
A:ALA254
|
2.7
|
24.4
|
1.0
|
CG
|
A:GLU182
|
2.7
|
17.1
|
1.0
|
O
|
A:THR252
|
2.7
|
38.9
|
1.0
|
CB
|
A:ALA305
|
2.7
|
99.8
|
1.0
|
OD1
|
A:ASP213
|
2.7
|
47.1
|
1.0
|
CD
|
A:GLU157
|
2.7
|
79.2
|
1.0
|
N
|
A:ILE159
|
2.7
|
86.8
|
1.0
|
CG
|
A:ASP213
|
2.7
|
47.1
|
1.0
|
C
|
A:THR252
|
2.7
|
38.9
|
1.0
|
CB
|
A:GLU157
|
2.8
|
79.2
|
1.0
|
OD1
|
A:ASP248
|
2.8
|
28.0
|
1.0
|
O
|
A:GLU156
|
2.8
|
24.3
|
1.0
|
CA
|
A:ASP248
|
2.9
|
22.1
|
1.0
|
CG
|
A:PRO253
|
3.0
|
55.7
|
1.0
|
O
|
A:GLU157
|
3.0
|
70.7
|
1.0
|
CZ
|
A:PHE184
|
3.0
|
49.3
|
1.0
|
OE1
|
A:GLU157
|
3.1
|
79.2
|
1.0
|
C
|
A:ARG181
|
3.1
|
27.8
|
1.0
|
CB
|
A:GLN256
|
3.1
|
100.0
|
1.0
|
C
|
A:ALA214
|
3.1
|
30.5
|
1.0
|
CA
|
A:ARG181
|
3.2
|
27.8
|
1.0
|
CB
|
A:GLU182
|
3.2
|
17.1
|
1.0
|
CG
|
A:ASP216
|
3.2
|
10.1
|
1.0
|
CG
|
A:PHE184
|
3.2
|
49.3
|
1.0
|
CA
|
A:GLU182
|
3.3
|
40.6
|
1.0
|
N
|
A:GLU157
|
3.4
|
70.7
|
1.0
|
OE2
|
A:GLU306
|
3.4
|
91.8
|
1.0
|
CD
|
A:PRO253
|
3.4
|
55.7
|
1.0
|
N
|
A:LYS183
|
3.4
|
45.1
|
1.0
|
CA
|
A:ILE159
|
3.5
|
86.8
|
1.0
|
CB
|
A:ARG181
|
3.5
|
47.9
|
1.0
|
N
|
A:MET249
|
3.5
|
41.8
|
1.0
|
OD1
|
A:ASN215
|
3.5
|
28.6
|
1.0
|
O
|
A:GLY178
|
3.6
|
67.1
|
1.0
|
N
|
A:ALA214
|
3.6
|
30.5
|
1.0
|
CB
|
A:LYS183
|
3.6
|
56.8
|
1.0
|
C
|
A:LEU179
|
3.6
|
22.6
|
1.0
|
CG2
|
A:THR252
|
3.7
|
81.4
|
1.0
|
C
|
A:GLU156
|
3.7
|
24.3
|
1.0
|
N
|
A:GLN256
|
3.7
|
30.5
|
1.0
|
OD2
|
A:ASP216
|
3.7
|
10.1
|
1.0
|
C
|
A:ASP248
|
3.7
|
22.1
|
1.0
|
CE1
|
A:PHE184
|
3.7
|
49.3
|
1.0
|
CA
|
A:TRP255
|
3.8
|
50.6
|
1.0
|
CA
|
A:ASN215
|
3.9
|
34.3
|
1.0
|
N
|
A:PHE184
|
3.9
|
62.0
|
1.0
|
NE
|
A:ARG181
|
3.9
|
47.9
|
1.0
|
CB
|
A:THR252
|
3.9
|
81.4
|
1.0
|
N
|
A:ASN215
|
3.9
|
34.3
|
1.0
|
CD1
|
A:PHE184
|
3.9
|
49.3
|
1.0
|
CG
|
A:GLN256
|
3.9
|
100.0
|
1.0
|
CA
|
A:ALA214
|
4.0
|
30.5
|
1.0
|
ND2
|
A:ASN217
|
4.0
|
53.4
|
1.0
|
O
|
A:LEU179
|
4.0
|
22.6
|
1.0
|
CA
|
A:THR252
|
4.0
|
38.9
|
1.0
|
N
|
A:ALA305
|
4.0
|
99.8
|
1.0
|
CA
|
A:CA910
|
4.0
|
10.5
|
1.0
|
N
|
A:ASP248
|
4.0
|
22.1
|
1.0
|
CA
|
A:ALA305
|
4.0
|
99.8
|
1.0
|
OE1
|
A:GLN256
|
4.1
|
100.0
|
1.0
|
CB
|
A:PHE184
|
4.1
|
49.3
|
1.0
|
C
|
A:GLU182
|
4.1
|
40.6
|
1.0
|
C
|
A:ILE159
|
4.1
|
86.8
|
1.0
|
CA
|
A:GLN256
|
4.1
|
30.5
|
1.0
|
CB
|
A:ASP216
|
4.1
|
10.1
|
1.0
|
CD
|
A:GLN256
|
4.1
|
100.0
|
1.0
|
CA
|
A:LYS183
|
4.1
|
45.1
|
1.0
|
CG
|
A:GLU119
|
4.2
|
8.7
|
1.0
|
CB
|
A:ASP213
|
4.2
|
47.1
|
1.0
|
O
|
A:ILE159
|
4.2
|
86.8
|
1.0
|
N
|
A:ASP216
|
4.2
|
48.2
|
1.0
|
CB
|
A:TRP255
|
4.3
|
53.1
|
1.0
|
OH
|
A:TYR187
|
4.3
|
32.2
|
1.0
|
O
|
A:ARG181
|
4.3
|
27.8
|
1.0
|
O
|
A:GLN256
|
4.4
|
30.5
|
1.0
|
CD
|
A:GLU306
|
4.4
|
91.8
|
1.0
|
CG
|
A:ASN215
|
4.4
|
28.6
|
1.0
|
CD
|
A:PRO160
|
4.4
|
38.1
|
1.0
|
C
|
A:LYS183
|
4.4
|
45.1
|
1.0
|
C
|
A:TRP255
|
4.5
|
50.6
|
1.0
|
OD1
|
A:ASN304
|
4.5
|
57.1
|
1.0
|
CD
|
A:LYS183
|
4.5
|
56.8
|
1.0
|
CG
|
A:GLU306
|
4.5
|
91.8
|
1.0
|
O
|
A:PHE184
|
4.6
|
62.0
|
1.0
|
CG
|
A:LYS183
|
4.6
|
56.8
|
1.0
|
C
|
A:ASP213
|
4.6
|
43.1
|
1.0
|
CA
|
A:PHE184
|
4.6
|
62.0
|
1.0
|
O
|
A:MET249
|
4.6
|
41.8
|
1.0
|
CD
|
A:ARG181
|
4.6
|
47.9
|
1.0
|
CG
|
A:ARG181
|
4.6
|
47.9
|
1.0
|
CA
|
A:ASP213
|
4.6
|
43.1
|
1.0
|
CA
|
A:LEU179
|
4.6
|
22.6
|
1.0
|
CB
|
A:GLU119
|
4.6
|
8.7
|
1.0
|
C
|
A:ASN215
|
4.7
|
34.3
|
1.0
|
CB
|
A:ASN215
|
4.7
|
28.6
|
1.0
|
O7
|
A:NAG803
|
4.7
|
63.9
|
0.5
|
NH2
|
A:ARG181
|
4.7
|
47.9
|
1.0
|
C
|
A:GLN256
|
4.7
|
30.5
|
1.0
|
CA
|
A:MET249
|
4.7
|
41.8
|
1.0
|
C
|
A:GLY178
|
4.7
|
67.1
|
1.0
|
NE2
|
A:GLN256
|
4.8
|
100.0
|
1.0
|
CG
|
A:ASN304
|
4.8
|
57.1
|
1.0
|
N
|
A:GLU306
|
4.8
|
62.2
|
1.0
|
N
|
A:PRO160
|
4.8
|
38.1
|
1.0
|
CB
|
A:ALA214
|
4.8
|
30.5
|
1.0
|
CZ
|
A:ARG181
|
4.9
|
47.9
|
1.0
|
CB
|
A:ILE159
|
4.9
|
54.5
|
1.0
|
O
|
A:ASP248
|
4.9
|
22.1
|
1.0
|
CB
|
A:ASN304
|
4.9
|
57.1
|
1.0
|
OD1
|
A:ASP246
|
4.9
|
13.3
|
1.0
|
C
|
A:ALA305
|
4.9
|
99.8
|
1.0
|
CA
|
A:ASP216
|
4.9
|
48.2
|
1.0
|
C
|
A:PHE184
|
5.0
|
62.0
|
1.0
|
N
|
A:ASN217
|
5.0
|
65.3
|
1.0
|
|
Calcium binding site 5 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 5 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca909
b:12.9
occ:1.00
|
O
|
A:PRO253
|
1.0
|
55.7
|
1.0
|
O
|
A:PRO158
|
1.0
|
43.1
|
1.0
|
OD1
|
A:ASN215
|
1.2
|
28.6
|
1.0
|
CB
|
A:ALA305
|
1.2
|
99.8
|
1.0
|
CG
|
A:ASP216
|
1.3
|
10.1
|
1.0
|
OD1
|
A:ASP216
|
1.4
|
10.1
|
1.0
|
CB
|
A:PRO158
|
1.4
|
43.1
|
1.0
|
CA
|
A:ALA254
|
1.6
|
24.4
|
1.0
|
OE2
|
A:GLU182
|
1.6
|
17.1
|
1.0
|
CA
|
A:ALA305
|
1.6
|
99.8
|
1.0
|
CB
|
A:ASP180
|
1.7
|
24.0
|
1.0
|
N
|
A:ALA305
|
1.7
|
99.8
|
1.0
|
CA
|
A:PRO158
|
1.7
|
43.1
|
1.0
|
CB
|
A:ASP216
|
1.7
|
10.1
|
1.0
|
N
|
A:ASP216
|
1.7
|
48.2
|
1.0
|
OD1
|
A:ASP248
|
1.7
|
28.0
|
1.0
|
CG
|
A:ASP180
|
1.7
|
24.0
|
1.0
|
C
|
A:PRO158
|
1.9
|
43.1
|
1.0
|
O
|
A:ALA214
|
1.9
|
30.5
|
1.0
|
OD1
|
A:ASP180
|
1.9
|
24.0
|
1.0
|
OD2
|
A:ASP248
|
1.9
|
28.0
|
1.0
|
CG
|
A:PRO158
|
1.9
|
43.1
|
1.0
|
CB
|
A:ALA254
|
1.9
|
24.4
|
1.0
|
CG
|
A:ASP248
|
2.0
|
28.0
|
1.0
|
OD2
|
A:ASP216
|
2.0
|
10.1
|
1.0
|
CA
|
A:ASN215
|
2.1
|
34.3
|
1.0
|
CG
|
A:ASN215
|
2.1
|
28.6
|
1.0
|
C
|
A:PRO253
|
2.2
|
55.7
|
1.0
|
OD2
|
A:ASP180
|
2.3
|
24.0
|
1.0
|
N
|
A:ALA254
|
2.4
|
24.4
|
1.0
|
CD
|
A:GLU182
|
2.4
|
17.1
|
1.0
|
CA
|
A:ASP216
|
2.4
|
48.2
|
1.0
|
C
|
A:ASN215
|
2.5
|
34.3
|
1.0
|
OE1
|
A:GLU119
|
2.5
|
8.7
|
1.0
|
CA
|
A:CA908
|
2.6
|
10.5
|
1.0
|
C
|
A:ALA214
|
2.6
|
30.5
|
1.0
|
OD1
|
A:ASN304
|
2.6
|
57.1
|
1.0
|
C
|
A:ALA254
|
2.6
|
24.4
|
1.0
|
CA
|
A:CA910
|
2.6
|
10.5
|
1.0
|
CB
|
A:ASN304
|
2.6
|
57.1
|
1.0
|
OE1
|
A:GLU182
|
2.7
|
17.1
|
1.0
|
N
|
A:ASN215
|
2.7
|
34.3
|
1.0
|
CB
|
A:ASN215
|
2.8
|
28.6
|
1.0
|
N
|
A:GLU306
|
2.8
|
62.2
|
1.0
|
O
|
A:GLY178
|
2.8
|
67.1
|
1.0
|
ND2
|
A:ASN217
|
2.9
|
53.4
|
1.0
|
O
|
A:ALA254
|
2.9
|
24.4
|
1.0
|
CA
|
A:ASP180
|
2.9
|
28.1
|
1.0
|
C
|
A:ALA305
|
3.0
|
99.8
|
1.0
|
CG
|
A:ASN304
|
3.0
|
57.1
|
1.0
|
C
|
A:ASN304
|
3.0
|
49.5
|
1.0
|
N
|
A:ASN217
|
3.0
|
65.3
|
1.0
|
ND2
|
A:ASN215
|
3.0
|
28.6
|
1.0
|
N
|
A:ILE159
|
3.1
|
86.8
|
1.0
|
CB
|
A:ASP248
|
3.1
|
28.0
|
1.0
|
N
|
A:PRO158
|
3.1
|
43.1
|
1.0
|
CD
|
A:PRO158
|
3.2
|
43.1
|
1.0
|
OE2
|
A:GLU119
|
3.2
|
8.7
|
1.0
|
C
|
A:ASP216
|
3.2
|
48.2
|
1.0
|
CA
|
A:PRO253
|
3.3
|
55.7
|
1.0
|
CD
|
A:GLU119
|
3.3
|
8.7
|
1.0
|
CG
|
A:GLU306
|
3.4
|
91.8
|
1.0
|
O
|
A:ASN215
|
3.4
|
34.3
|
1.0
|
CA
|
A:ASN304
|
3.4
|
49.5
|
1.0
|
OE2
|
A:GLU157
|
3.5
|
79.2
|
1.0
|
N
|
A:TRP255
|
3.5
|
50.6
|
1.0
|
N
|
A:ASP180
|
3.6
|
28.1
|
1.0
|
CB
|
A:PRO253
|
3.6
|
55.7
|
1.0
|
OE2
|
A:GLU306
|
3.6
|
91.8
|
1.0
|
O
|
A:GLN256
|
3.7
|
30.5
|
1.0
|
O
|
A:LEU179
|
3.7
|
22.6
|
1.0
|
CA
|
A:ILE159
|
3.7
|
86.8
|
1.0
|
CG2
|
A:ILE159
|
3.7
|
54.5
|
1.0
|
CE2
|
A:PHE184
|
3.8
|
49.3
|
1.0
|
O
|
A:ALA305
|
3.8
|
99.8
|
1.0
|
O
|
A:ASN304
|
3.9
|
49.5
|
1.0
|
C
|
A:LEU179
|
3.9
|
22.6
|
1.0
|
CG
|
A:GLU182
|
3.9
|
17.1
|
1.0
|
C
|
A:GLY178
|
3.9
|
67.1
|
1.0
|
O
|
A:GLU306
|
3.9
|
62.2
|
1.0
|
OE1
|
A:GLN256
|
3.9
|
100.0
|
1.0
|
C
|
A:ASP180
|
3.9
|
28.1
|
1.0
|
O
|
A:ASN217
|
4.0
|
65.3
|
1.0
|
CD
|
A:GLU306
|
4.0
|
91.8
|
1.0
|
ND2
|
A:ASN304
|
4.0
|
57.1
|
1.0
|
CG2
|
A:VAL258
|
4.0
|
48.4
|
1.0
|
OD2
|
A:ASP213
|
4.0
|
47.1
|
1.0
|
CA
|
A:ALA214
|
4.1
|
30.5
|
1.0
|
CG
|
A:ASN217
|
4.1
|
53.4
|
1.0
|
CA
|
A:GLU306
|
4.1
|
62.2
|
1.0
|
CA
|
A:ASN217
|
4.1
|
65.3
|
1.0
|
CB
|
A:GLU306
|
4.2
|
91.8
|
1.0
|
CD
|
A:GLU157
|
4.2
|
79.2
|
1.0
|
CB
|
A:GLN256
|
4.3
|
100.0
|
1.0
|
C
|
A:GLU157
|
4.3
|
70.7
|
1.0
|
N
|
A:ARG181
|
4.3
|
27.8
|
1.0
|
CD2
|
A:PHE184
|
4.3
|
49.3
|
1.0
|
CB
|
A:ALA214
|
4.3
|
30.5
|
1.0
|
CA
|
A:ASP248
|
4.4
|
22.1
|
1.0
|
N
|
A:ALA214
|
4.4
|
30.5
|
1.0
|
CB
|
A:ILE159
|
4.4
|
54.5
|
1.0
|
N
|
A:GLN256
|
4.4
|
30.5
|
1.0
|
O3
|
A:NAG803
|
4.4
|
63.9
|
0.5
|
CG
|
A:GLU157
|
4.4
|
79.2
|
1.0
|
O
|
A:ASP216
|
4.4
|
48.2
|
1.0
|
CB
|
A:GLU182
|
4.5
|
17.1
|
1.0
|
CB
|
A:ASN217
|
4.5
|
53.4
|
1.0
|
N
|
A:PRO253
|
4.5
|
55.7
|
1.0
|
CA
|
A:GLU157
|
4.5
|
70.7
|
1.0
|
CG
|
A:GLU119
|
4.5
|
8.7
|
1.0
|
CA
|
A:GLY178
|
4.6
|
67.1
|
1.0
|
O
|
A:ASP180
|
4.6
|
28.1
|
1.0
|
OD1
|
A:ASP246
|
4.6
|
13.3
|
1.0
|
C
|
A:GLN256
|
4.6
|
30.5
|
1.0
|
CD
|
A:GLN256
|
4.6
|
100.0
|
1.0
|
OD2
|
A:ASP246
|
4.6
|
13.3
|
1.0
|
CD
|
A:LYS183
|
4.6
|
56.8
|
1.0
|
C
|
A:GLU306
|
4.6
|
62.2
|
1.0
|
N
|
A:GLU182
|
4.6
|
40.6
|
1.0
|
CZ
|
A:PHE184
|
4.7
|
49.3
|
1.0
|
C
|
A:ASN217
|
4.7
|
65.3
|
1.0
|
CA
|
A:TRP255
|
4.8
|
50.6
|
1.0
|
N
|
A:LEU179
|
4.8
|
22.6
|
1.0
|
N
|
A:ASN304
|
4.8
|
49.5
|
1.0
|
CA
|
A:GLN256
|
4.8
|
30.5
|
1.0
|
O
|
A:THR252
|
4.9
|
38.9
|
1.0
|
CA
|
A:LEU179
|
4.9
|
22.6
|
1.0
|
N
|
A:ASP248
|
4.9
|
22.1
|
1.0
|
CB
|
A:LYS183
|
4.9
|
56.8
|
1.0
|
O7
|
A:NAG803
|
4.9
|
63.9
|
0.5
|
CG
|
A:ASP213
|
4.9
|
47.1
|
1.0
|
CG
|
A:PRO253
|
4.9
|
55.7
|
1.0
|
OD1
|
A:ASP213
|
5.0
|
47.1
|
1.0
|
C
|
A:ILE159
|
5.0
|
86.8
|
1.0
|
CB
|
A:GLU157
|
5.0
|
79.2
|
1.0
|
|
Calcium binding site 6 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 6 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca910
b:10.5
occ:1.00
|
OD1
|
A:ASN304
|
0.8
|
57.1
|
1.0
|
ND2
|
A:ASN217
|
0.8
|
53.4
|
1.0
|
CG
|
A:ASN304
|
1.0
|
57.1
|
1.0
|
OD1
|
A:ASP248
|
1.2
|
28.0
|
1.0
|
N
|
A:ASN217
|
1.4
|
65.3
|
1.0
|
ND2
|
A:ASN304
|
1.4
|
57.1
|
1.0
|
O
|
A:GLN256
|
1.6
|
30.5
|
1.0
|
CA
|
A:ASN304
|
1.7
|
49.5
|
1.0
|
CB
|
A:ASN304
|
1.7
|
57.1
|
1.0
|
CG
|
A:ASN217
|
1.9
|
53.4
|
1.0
|
CB
|
A:ASN217
|
1.9
|
53.4
|
1.0
|
N
|
A:ALA305
|
2.0
|
99.8
|
1.0
|
CA
|
A:ASN217
|
2.0
|
65.3
|
1.0
|
OE2
|
A:GLU182
|
2.0
|
17.1
|
1.0
|
O3
|
A:NAG803
|
2.1
|
63.9
|
0.5
|
CG2
|
A:VAL258
|
2.1
|
48.4
|
1.0
|
OD2
|
A:ASP180
|
2.1
|
24.0
|
1.0
|
O
|
A:ASN217
|
2.1
|
65.3
|
1.0
|
C
|
A:ASN304
|
2.1
|
49.5
|
1.0
|
OD2
|
A:ASP246
|
2.2
|
13.3
|
1.0
|
CG
|
A:ASP248
|
2.2
|
28.0
|
1.0
|
OD2
|
A:ASP248
|
2.2
|
28.0
|
1.0
|
OE1
|
A:GLN256
|
2.2
|
100.0
|
1.0
|
O
|
A:ALA254
|
2.4
|
24.4
|
1.0
|
C
|
A:ASP216
|
2.4
|
48.2
|
1.0
|
OD1
|
A:ASN215
|
2.4
|
28.6
|
1.0
|
CB
|
A:ASP216
|
2.4
|
10.1
|
1.0
|
NZ
|
A:LYS183
|
2.6
|
56.8
|
1.0
|
OD1
|
A:ASN217
|
2.6
|
53.4
|
1.0
|
CA
|
A:CA909
|
2.6
|
12.9
|
1.0
|
C
|
A:ASN217
|
2.7
|
65.3
|
1.0
|
OD1
|
A:ASP246
|
2.7
|
13.3
|
1.0
|
C
|
A:GLN256
|
2.8
|
30.5
|
1.0
|
C
|
A:ALA254
|
2.8
|
24.4
|
1.0
|
CG
|
A:ASP180
|
2.9
|
24.0
|
1.0
|
CG
|
A:ASP246
|
2.9
|
13.3
|
1.0
|
CA
|
A:ALA305
|
2.9
|
99.8
|
1.0
|
CA
|
A:ASP216
|
3.0
|
48.2
|
1.0
|
N
|
A:ASN304
|
3.0
|
49.5
|
1.0
|
O
|
A:PRO253
|
3.0
|
55.7
|
1.0
|
CD
|
A:GLU182
|
3.1
|
17.1
|
1.0
|
CA
|
A:ALA254
|
3.1
|
24.4
|
1.0
|
CB
|
A:ALA305
|
3.2
|
99.8
|
1.0
|
CD
|
A:LYS183
|
3.2
|
56.8
|
1.0
|
N
|
A:ASP216
|
3.2
|
48.2
|
1.0
|
C3
|
A:NAG803
|
3.2
|
63.9
|
0.5
|
O
|
A:ASP216
|
3.2
|
48.2
|
1.0
|
C4
|
A:NAG803
|
3.3
|
63.9
|
0.5
|
OE2
|
A:GLU157
|
3.3
|
79.2
|
1.0
|
O
|
A:ASN304
|
3.3
|
49.5
|
1.0
|
CG
|
A:ASP216
|
3.3
|
10.1
|
1.0
|
CE
|
A:LYS183
|
3.3
|
56.8
|
1.0
|
CD
|
A:GLN256
|
3.3
|
100.0
|
1.0
|
O4
|
A:NAG803
|
3.4
|
63.9
|
0.5
|
O
|
A:PRO158
|
3.4
|
43.1
|
1.0
|
OD1
|
A:ASP180
|
3.4
|
24.0
|
1.0
|
CB
|
A:ASP248
|
3.4
|
28.0
|
1.0
|
O7
|
A:NAG803
|
3.4
|
63.9
|
0.5
|
N
|
A:TRP255
|
3.4
|
50.6
|
1.0
|
CB
|
A:VAL258
|
3.4
|
48.4
|
1.0
|
CG
|
A:ASN215
|
3.5
|
28.6
|
1.0
|
OD1
|
A:ASP216
|
3.5
|
10.1
|
1.0
|
O
|
A:GLU303
|
3.5
|
54.6
|
1.0
|
C
|
A:ASN215
|
3.6
|
34.3
|
1.0
|
O
|
A:ALA257
|
3.6
|
51.8
|
1.0
|
C
|
A:ALA257
|
3.6
|
51.8
|
1.0
|
C2
|
A:NAG803
|
3.6
|
63.9
|
0.5
|
CB
|
A:ASP180
|
3.6
|
24.0
|
1.0
|
CA
|
A:GLN256
|
3.7
|
30.5
|
1.0
|
C
|
A:GLU303
|
3.7
|
54.6
|
1.0
|
N
|
A:GLN256
|
3.7
|
30.5
|
1.0
|
CG
|
A:GLU182
|
3.7
|
17.1
|
1.0
|
CB
|
A:GLN256
|
3.8
|
100.0
|
1.0
|
N
|
A:ALA257
|
3.8
|
51.8
|
1.0
|
N
|
A:ALA218
|
3.8
|
45.7
|
1.0
|
N
|
A:VAL258
|
3.8
|
61.4
|
1.0
|
C
|
A:PRO253
|
3.8
|
55.7
|
1.0
|
CB
|
A:ALA254
|
3.9
|
24.4
|
1.0
|
CA
|
A:PRO158
|
3.9
|
43.1
|
1.0
|
NE2
|
A:GLN256
|
3.9
|
100.0
|
1.0
|
CA
|
A:ALA257
|
3.9
|
51.8
|
1.0
|
CA
|
A:ASN215
|
3.9
|
34.3
|
1.0
|
CA
|
A:VAL258
|
4.0
|
61.4
|
1.0
|
N
|
A:ASP248
|
4.0
|
22.1
|
1.0
|
ND2
|
A:ASN215
|
4.0
|
28.6
|
1.0
|
CB
|
A:PRO158
|
4.0
|
43.1
|
1.0
|
CB
|
A:GLU182
|
4.0
|
17.1
|
1.0
|
O
|
A:ASN215
|
4.0
|
34.3
|
1.0
|
CA
|
A:CA908
|
4.0
|
10.5
|
1.0
|
CG
|
A:PRO158
|
4.0
|
43.1
|
1.0
|
N
|
A:ALA254
|
4.1
|
24.4
|
1.0
|
CA
|
A:TRP255
|
4.1
|
50.6
|
1.0
|
OD2
|
A:ASP216
|
4.1
|
10.1
|
1.0
|
CG1
|
A:VAL258
|
4.1
|
48.4
|
1.0
|
OE1
|
A:GLU182
|
4.1
|
17.1
|
1.0
|
CG
|
A:LYS183
|
4.2
|
56.8
|
1.0
|
C
|
A:PRO158
|
4.2
|
43.1
|
1.0
|
O
|
A:ALA214
|
4.2
|
30.5
|
1.0
|
O3
|
A:NDG903
|
4.2
|
56.2
|
0.5
|
C7
|
A:NAG803
|
4.2
|
63.9
|
0.5
|
O4
|
A:NDG903
|
4.3
|
56.2
|
0.5
|
CE2
|
A:PHE184
|
4.3
|
49.3
|
1.0
|
C
|
A:TRP255
|
4.3
|
50.6
|
1.0
|
CA
|
A:ASP248
|
4.3
|
22.1
|
1.0
|
C
|
A:ALA305
|
4.3
|
99.8
|
1.0
|
CG
|
A:GLN256
|
4.3
|
100.0
|
1.0
|
CB
|
A:ASP246
|
4.4
|
13.3
|
1.0
|
N2
|
A:NAG803
|
4.4
|
63.9
|
0.5
|
CD
|
A:GLU157
|
4.5
|
79.2
|
1.0
|
CB
|
A:ASN215
|
4.5
|
28.6
|
1.0
|
CA
|
A:ALA218
|
4.5
|
45.7
|
1.0
|
O6
|
A:NAG803
|
4.6
|
63.9
|
0.5
|
CB
|
A:LYS183
|
4.6
|
56.8
|
1.0
|
C5
|
A:NAG803
|
4.6
|
63.9
|
0.5
|
CG
|
A:GLU157
|
4.6
|
79.2
|
1.0
|
N
|
A:GLU306
|
4.6
|
62.2
|
1.0
|
CG
|
A:PRO219
|
4.7
|
52.0
|
1.0
|
O5
|
A:NAG803
|
4.7
|
63.9
|
0.5
|
CZ
|
A:PHE184
|
4.7
|
49.3
|
1.0
|
C1
|
A:NAG803
|
4.8
|
63.9
|
0.5
|
N
|
A:LEU247
|
4.8
|
48.5
|
1.0
|
C
|
A:LEU247
|
4.8
|
48.5
|
1.0
|
CE1
|
A:PHE308
|
4.8
|
0.0
|
1.0
|
OE1
|
A:GLU119
|
4.8
|
8.7
|
1.0
|
CA
|
A:PRO253
|
4.9
|
55.7
|
1.0
|
C
|
A:ALA218
|
5.0
|
45.7
|
1.0
|
N
|
A:PRO158
|
5.0
|
43.1
|
1.0
|
|
Calcium binding site 7 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 7 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca911
b:37.4
occ:1.00
|
N
|
A:LYS402
|
0.4
|
0.0
|
1.0
|
CA
|
A:SER441
|
0.5
|
0.0
|
1.0
|
OG1
|
A:THR425
|
0.6
|
99.7
|
1.0
|
CG2
|
A:THR425
|
0.6
|
99.7
|
1.0
|
CB
|
A:THR425
|
0.6
|
99.7
|
1.0
|
OG1
|
A:THR407
|
0.9
|
99.3
|
1.0
|
CB
|
A:THR407
|
0.9
|
99.3
|
1.0
|
SD
|
A:MET447
|
0.9
|
57.0
|
1.0
|
O
|
A:PHE290
|
1.0
|
52.9
|
1.0
|
O
|
A:VAL401
|
1.0
|
83.5
|
1.0
|
C
|
A:VAL401
|
1.0
|
83.5
|
1.0
|
CG2
|
A:THR407
|
1.1
|
99.3
|
1.0
|
C
|
A:PHE290
|
1.2
|
52.9
|
1.0
|
CD
|
A:PRO442
|
1.2
|
82.0
|
1.0
|
N
|
A:SER441
|
1.2
|
0.0
|
1.0
|
O
|
A:NDG811
|
1.3
|
0.0
|
0.8
|
O3
|
A:NAG807
|
1.4
|
62.6
|
0.5
|
C
|
A:SER441
|
1.4
|
0.0
|
1.0
|
CE
|
A:MET447
|
1.4
|
57.0
|
1.0
|
CA
|
A:PHE290
|
1.4
|
52.9
|
1.0
|
CA
|
A:LYS402
|
1.5
|
0.0
|
1.0
|
OG1
|
A:THR405
|
1.6
|
0.0
|
1.0
|
N
|
A:PRO442
|
1.6
|
82.0
|
1.0
|
C1
|
A:NDG811
|
1.6
|
0.0
|
0.8
|
CG
|
A:GLN455
|
1.7
|
97.8
|
1.0
|
N2
|
A:NAG807
|
1.7
|
62.6
|
0.5
|
CD1
|
A:LEU457
|
1.7
|
65.7
|
1.0
|
O
|
A:LYS294
|
1.7
|
0.0
|
1.0
|
OE1
|
A:GLN501
|
1.7
|
86.9
|
1.0
|
OE2
|
A:GLU328
|
1.8
|
0.0
|
1.0
|
CA
|
A:THR425
|
1.8
|
64.5
|
1.0
|
OG1
|
A:THR322
|
1.8
|
99.7
|
1.0
|
C1
|
A:NAG808
|
1.8
|
83.7
|
0.5
|
CB
|
A:GLN455
|
1.9
|
97.8
|
1.0
|
CG
|
A:GLN501
|
1.9
|
86.9
|
1.0
|
OE2
|
A:GLU291
|
1.9
|
52.9
|
1.0
|
N
|
A:THR425
|
1.9
|
64.5
|
1.0
|
CD
|
A:GLN501
|
1.9
|
86.9
|
1.0
|
CB
|
A:SER441
|
1.9
|
0.0
|
1.0
|
C7
|
A:NAG807
|
2.0
|
62.6
|
0.5
|
CE2
|
A:PHE445
|
2.0
|
0.0
|
1.0
|
O
|
A:THR423
|
2.1
|
91.3
|
1.0
|
OE1
|
A:GLU232
|
2.1
|
49.7
|
1.0
|
CG
|
A:LYS294
|
2.1
|
100.0
|
1.0
|
C3
|
A:NAG807
|
2.1
|
62.6
|
0.5
|
OE2
|
A:GLU232
|
2.1
|
49.7
|
1.0
|
C
|
A:PRO440
|
2.1
|
75.5
|
1.0
|
CZ
|
A:PHE445
|
2.1
|
0.0
|
1.0
|
N
|
A:PHE290
|
2.2
|
52.9
|
1.0
|
C2
|
A:NAG807
|
2.2
|
62.6
|
0.5
|
CG
|
A:PRO442
|
2.2
|
82.0
|
1.0
|
O5
|
A:NAG808
|
2.2
|
83.7
|
0.5
|
CD
|
A:GLU232
|
2.2
|
49.7
|
1.0
|
CA
|
A:LYS294
|
2.3
|
0.0
|
1.0
|
CA
|
A:VAL401
|
2.3
|
83.5
|
1.0
|
O7
|
A:NAG808
|
2.3
|
83.7
|
0.5
|
CA
|
A:THR407
|
2.3
|
0.0
|
1.0
|
CB
|
A:VAL323
|
2.3
|
37.3
|
1.0
|
O
|
A:PRO442
|
2.3
|
82.0
|
1.0
|
N
|
A:GLU291
|
2.3
|
99.8
|
1.0
|
O
|
A:SER441
|
2.4
|
0.0
|
1.0
|
C
|
A:LYS294
|
2.4
|
0.0
|
1.0
|
O
|
A:PRO440
|
2.4
|
75.5
|
1.0
|
N
|
A:VAL323
|
2.4
|
0.0
|
1.0
|
OG
|
A:SER441
|
2.4
|
0.0
|
1.0
|
O
|
A:ASP289
|
2.4
|
0.0
|
1.0
|
CE1
|
A:PHE445
|
2.4
|
0.0
|
1.0
|
CG
|
A:PRO452
|
2.4
|
99.8
|
1.0
|
C8
|
A:NAG807
|
2.5
|
62.6
|
0.5
|
CG
|
A:MET447
|
2.5
|
57.0
|
1.0
|
C5
|
A:NDG811
|
2.5
|
0.0
|
0.8
|
CA
|
A:THR322
|
2.5
|
85.2
|
1.0
|
O7
|
A:NAG807
|
2.5
|
62.6
|
0.5
|
CB
|
A:LYS402
|
2.5
|
100.0
|
1.0
|
C
|
A:LYS402
|
2.5
|
0.0
|
1.0
|
CG
|
A:LEU457
|
2.5
|
65.7
|
1.0
|
CD1
|
A:PHE445
|
2.6
|
0.0
|
1.0
|
CB
|
A:THR322
|
2.6
|
99.7
|
1.0
|
N
|
A:THR407
|
2.6
|
0.0
|
1.0
|
O
|
A:ARG293
|
2.6
|
59.5
|
1.0
|
CB
|
A:LYS294
|
2.7
|
100.0
|
1.0
|
C
|
A:ASP289
|
2.7
|
0.0
|
1.0
|
CG2
|
A:THR322
|
2.7
|
99.7
|
1.0
|
CG2
|
A:THR320
|
2.7
|
82.8
|
1.0
|
NE2
|
A:GLN501
|
2.7
|
86.9
|
1.0
|
CD2
|
A:PHE445
|
2.7
|
0.0
|
1.0
|
CA
|
A:PRO442
|
2.8
|
82.0
|
1.0
|
CD
|
A:PRO452
|
2.8
|
99.8
|
1.0
|
O
|
A:LYS402
|
2.8
|
0.0
|
1.0
|
O
|
A:TYR400
|
2.8
|
0.0
|
1.0
|
O
|
A:VAL323
|
2.8
|
0.0
|
1.0
|
CB
|
A:GLN501
|
2.8
|
86.9
|
1.0
|
CA
|
A:GLY424
|
2.8
|
56.9
|
1.0
|
O
|
A:VAL321
|
2.8
|
0.0
|
1.0
|
OD2
|
A:ASP289
|
2.9
|
99.7
|
1.0
|
CB
|
A:PHE290
|
2.9
|
99.0
|
1.0
|
C
|
A:THR425
|
2.9
|
64.5
|
1.0
|
CD
|
A:GLN455
|
2.9
|
97.8
|
1.0
|
CB
|
A:PRO452
|
2.9
|
99.8
|
1.0
|
CD
|
A:GLU291
|
2.9
|
52.9
|
1.0
|
CB
|
A:THR405
|
2.9
|
0.0
|
1.0
|
C
|
A:GLY424
|
2.9
|
56.9
|
1.0
|
CD
|
A:GLU328
|
2.9
|
0.0
|
1.0
|
CG2
|
A:VAL323
|
2.9
|
37.3
|
1.0
|
CA
|
A:VAL323
|
3.0
|
0.0
|
1.0
|
CB
|
A:LEU457
|
3.0
|
65.7
|
1.0
|
C
|
A:PRO442
|
3.0
|
82.0
|
1.0
|
C2
|
A:NDG811
|
3.0
|
0.0
|
0.8
|
CG
|
A:PHE445
|
3.0
|
0.0
|
1.0
|
CG1
|
A:VAL323
|
3.0
|
37.3
|
1.0
|
CG
|
A:PRO498
|
3.0
|
0.0
|
1.0
|
C7
|
A:NAG808
|
3.1
|
83.7
|
0.5
|
CG
|
A:LYS402
|
3.1
|
100.0
|
1.0
|
OG
|
A:SER460
|
3.1
|
76.5
|
1.0
|
C
|
A:THR423
|
3.1
|
91.3
|
1.0
|
CG
|
A:GLU232
|
3.1
|
49.7
|
1.0
|
CB
|
A:PRO442
|
3.1
|
82.0
|
1.0
|
O
|
A:ASP449
|
3.1
|
0.0
|
1.0
|
O
|
A:THR405
|
3.2
|
0.0
|
1.0
|
C
|
A:THR322
|
3.2
|
85.2
|
1.0
|
C2
|
A:NAG808
|
3.2
|
83.7
|
0.5
|
CA
|
A:GLN501
|
3.2
|
0.0
|
1.0
|
C
|
A:THR405
|
3.2
|
0.0
|
1.0
|
N
|
A:TYR406
|
3.2
|
96.1
|
1.0
|
NE2
|
A:GLN455
|
3.2
|
97.8
|
1.0
|
CD
|
A:PRO498
|
3.2
|
0.0
|
1.0
|
CG2
|
A:THR405
|
3.2
|
0.0
|
1.0
|
C6
|
A:NDG811
|
3.2
|
0.0
|
0.8
|
O
|
A:ASN403
|
3.2
|
0.0
|
1.0
|
N
|
A:VAL401
|
3.2
|
83.5
|
1.0
|
N
|
A:LEU426
|
3.3
|
0.0
|
1.0
|
C
|
A:VAL323
|
3.3
|
0.0
|
1.0
|
CB
|
A:VAL401
|
3.3
|
92.7
|
1.0
|
O
|
A:VAL456
|
3.3
|
100.0
|
1.0
|
CA
|
A:LEU457
|
3.3
|
0.0
|
1.0
|
N
|
A:ASN403
|
3.3
|
0.0
|
1.0
|
C
|
A:THR407
|
3.4
|
0.0
|
1.0
|
CA
|
A:GLN455
|
3.4
|
0.0
|
1.0
|
C
|
A:TYR400
|
3.4
|
0.0
|
1.0
|
C
|
A:TYR406
|
3.4
|
96.1
|
1.0
|
N
|
A:THR322
|
3.4
|
85.2
|
1.0
|
CD
|
A:LYS294
|
3.4
|
100.0
|
1.0
|
CG1
|
A:VAL401
|
3.4
|
92.7
|
1.0
|
C
|
A:VAL321
|
3.5
|
0.0
|
1.0
|
CA
|
A:PRO440
|
3.5
|
75.5
|
1.0
|
O
|
A:GLN450
|
3.5
|
0.0
|
1.0
|
N
|
A:GLY424
|
3.5
|
56.9
|
1.0
|
N
|
A:LYS294
|
3.5
|
0.0
|
1.0
|
N2
|
A:NAG808
|
3.5
|
83.7
|
0.5
|
CB
|
A:PHE331
|
3.5
|
96.7
|
1.0
|
CA
|
A:TYR406
|
3.5
|
96.1
|
1.0
|
C5
|
A:NAG808
|
3.5
|
83.7
|
0.5
|
C4
|
A:NAG807
|
3.5
|
62.6
|
0.5
|
OE1
|
A:GLU291
|
3.5
|
52.9
|
1.0
|
OE1
|
A:GLU328
|
3.5
|
0.0
|
1.0
|
C
|
A:ARG293
|
3.5
|
59.5
|
1.0
|
O
|
A:GLN501
|
3.5
|
0.0
|
1.0
|
CA
|
A:GLU291
|
3.5
|
99.8
|
1.0
|
O
|
A:THR425
|
3.6
|
64.5
|
1.0
|
C8
|
A:NAG810
|
3.6
|
79.0
|
0.5
|
C3
|
A:NDG811
|
3.6
|
0.0
|
0.8
|
CD2
|
A:PHE290
|
3.6
|
99.0
|
1.0
|
CB
|
A:MET447
|
3.6
|
57.0
|
1.0
|
C4
|
A:NDG811
|
3.6
|
0.0
|
0.8
|
C1
|
A:NAG807
|
3.6
|
62.6
|
0.5
|
CB
|
A:SER460
|
3.6
|
76.5
|
1.0
|
O
|
A:GLN455
|
3.6
|
0.0
|
1.0
|
CA
|
A:THR405
|
3.7
|
0.0
|
1.0
|
O6
|
A:NDG811
|
3.7
|
0.0
|
0.8
|
CA
|
A:CA915
|
3.7
|
70.2
|
1.0
|
N
|
A:GLN295
|
3.7
|
91.9
|
1.0
|
N2
|
A:NDG811
|
3.7
|
0.0
|
0.8
|
OE1
|
A:GLN455
|
3.7
|
97.8
|
1.0
|
C
|
A:GLN501
|
3.7
|
0.0
|
1.0
|
CG
|
A:PHE290
|
3.7
|
99.0
|
1.0
|
O4
|
A:NAG807
|
3.7
|
62.6
|
0.5
|
CE
|
A:LYS294
|
3.8
|
100.0
|
1.0
|
C
|
A:GLN455
|
3.8
|
0.0
|
1.0
|
CB
|
A:PRO359
|
3.8
|
92.7
|
1.0
|
N
|
A:VAL408
|
3.8
|
99.0
|
1.0
|
CG
|
A:GLU328
|
3.8
|
0.0
|
1.0
|
CE
|
A:LYS402
|
3.9
|
100.0
|
1.0
|
C8
|
A:NAG808
|
3.9
|
83.7
|
0.5
|
O
|
A:THR407
|
3.9
|
0.0
|
1.0
|
CB
|
A:PRO440
|
3.9
|
75.5
|
1.0
|
O
|
A:LEU496
|
3.9
|
89.3
|
1.0
|
CA
|
A:ASP289
|
3.9
|
0.0
|
1.0
|
CD2
|
A:LEU496
|
3.9
|
80.3
|
1.0
|
CD2
|
A:LEU457
|
3.9
|
65.7
|
1.0
|
CG
|
A:GLU291
|
3.9
|
52.9
|
1.0
|
CB
|
A:GLU291
|
3.9
|
52.9
|
1.0
|
CZ3
|
A:TRP483
|
3.9
|
0.0
|
1.0
|
N
|
A:THR458
|
4.0
|
89.0
|
1.0
|
CD2
|
A:PHE331
|
4.0
|
96.7
|
1.0
|
CG
|
A:GLN295
|
4.0
|
77.0
|
1.0
|
CB
|
A:GLU328
|
4.0
|
0.0
|
1.0
|
CG1
|
A:ILE409
|
4.0
|
52.3
|
1.0
|
O
|
A:GLY424
|
4.0
|
56.9
|
1.0
|
O
|
A:CYS448
|
4.0
|
0.0
|
1.0
|
N
|
A:GLN455
|
4.0
|
0.0
|
1.0
|
C
|
A:VAL456
|
4.0
|
100.0
|
1.0
|
O
|
A:SER398
|
4.0
|
0.0
|
1.0
|
CB
|
A:THR320
|
4.0
|
82.8
|
1.0
|
CB
|
A:PHE445
|
4.0
|
0.0
|
1.0
|
CB
|
A:ALA335
|
4.0
|
97.4
|
1.0
|
CG
|
A:ASP289
|
4.0
|
99.7
|
1.0
|
CA
|
A:GLN295
|
4.1
|
91.9
|
1.0
|
CG
|
A:PRO359
|
4.1
|
92.7
|
1.0
|
CB
|
A:PRO498
|
4.1
|
0.0
|
1.0
|
CG
|
A:PHE331
|
4.1
|
96.7
|
1.0
|
O
|
A:THR458
|
4.1
|
89.0
|
1.0
|
O
|
A:GLN500
|
4.1
|
0.0
|
1.0
|
C3
|
A:NAG808
|
4.1
|
83.7
|
0.5
|
CB
|
A:LEU496
|
4.1
|
80.3
|
1.0
|
NZ
|
A:LYS294
|
4.1
|
100.0
|
1.0
|
N
|
A:LEU457
|
4.2
|
0.0
|
1.0
|
N
|
A:THR405
|
4.2
|
0.0
|
1.0
|
N
|
A:PRO452
|
4.2
|
99.8
|
1.0
|
CD
|
A:LYS402
|
4.2
|
100.0
|
1.0
|
O
|
A:LEU426
|
4.2
|
0.0
|
1.0
|
O
|
A:VAL408
|
4.2
|
99.0
|
1.0
|
O
|
A:VAL439
|
4.2
|
53.0
|
1.0
|
OG1
|
A:THR458
|
4.2
|
69.7
|
1.0
|
O
|
A:TYR406
|
4.2
|
96.1
|
1.0
|
CA
|
A:PRO452
|
4.2
|
99.8
|
1.0
|
C
|
A:ASN403
|
4.3
|
0.0
|
1.0
|
CH2
|
A:TRP483
|
4.3
|
0.0
|
1.0
|
C
|
A:LEU426
|
4.3
|
0.0
|
1.0
|
CG1
|
A:VAL525
|
4.3
|
54.0
|
1.0
|
C
|
A:GLN450
|
4.3
|
0.0
|
1.0
|
N
|
A:ARG443
|
4.3
|
83.8
|
1.0
|
C6
|
A:NAG808
|
4.3
|
83.7
|
0.5
|
O
|
A:ALA329
|
4.3
|
93.5
|
1.0
|
CG2
|
A:ILE409
|
4.3
|
52.3
|
1.0
|
CB
|
A:GLU232
|
4.3
|
49.7
|
1.0
|
NH1
|
A:ARG443
|
4.4
|
95.2
|
1.0
|
C
|
A:ASP449
|
4.4
|
0.0
|
1.0
|
C
|
A:LEU457
|
4.4
|
0.0
|
1.0
|
O
|
A:THR322
|
4.4
|
85.2
|
1.0
|
CA
|
A:THR423
|
4.4
|
91.3
|
1.0
|
OG1
|
A:THR320
|
4.4
|
82.8
|
1.0
|
CA
|
A:LEU426
|
4.4
|
0.0
|
1.0
|
OD2
|
A:ASP325
|
4.4
|
64.5
|
1.0
|
N
|
A:LEU292
|
4.4
|
96.5
|
1.0
|
C4
|
A:NAG808
|
4.4
|
83.7
|
0.5
|
CE2
|
A:PHE290
|
4.4
|
99.0
|
1.0
|
N
|
A:GLN501
|
4.4
|
0.0
|
1.0
|
O5
|
A:NAG807
|
4.5
|
62.6
|
0.5
|
O
|
A:GLU324
|
4.5
|
0.0
|
1.0
|
O7
|
A:NAG810
|
4.5
|
79.0
|
0.5
|
O7
|
A:NDG811
|
4.5
|
0.0
|
0.8
|
C
|
A:GLU291
|
4.5
|
99.8
|
1.0
|
N
|
A:ILE427
|
4.5
|
0.0
|
1.0
|
C7
|
A:NDG811
|
4.6
|
0.0
|
0.8
|
CA
|
A:ASN403
|
4.6
|
0.0
|
1.0
|
C7
|
A:NAG810
|
4.6
|
79.0
|
0.5
|
CB
|
A:ILE427
|
4.6
|
0.0
|
1.0
|
CG
|
A:LEU496
|
4.6
|
80.3
|
1.0
|
N
|
A:PRO440
|
4.6
|
75.5
|
1.0
|
O
|
A:GLU399
|
4.6
|
97.0
|
1.0
|
NE2
|
A:GLN295
|
4.6
|
77.0
|
1.0
|
CA
|
A:ALA335
|
4.6
|
97.4
|
1.0
|
N
|
A:GLU324
|
4.6
|
0.0
|
1.0
|
C5
|
A:NAG807
|
4.6
|
62.6
|
0.5
|
CD1
|
A:ILE409
|
4.6
|
52.3
|
1.0
|
N
|
A:THR423
|
4.6
|
91.3
|
1.0
|
CG2
|
A:THR227
|
4.6
|
92.2
|
1.0
|
CG2
|
A:VAL401
|
4.6
|
92.7
|
1.0
|
O4
|
A:NDG811
|
4.6
|
0.0
|
0.8
|
CA
|
A:PHE331
|
4.7
|
76.3
|
1.0
|
C8
|
A:NAG812
|
4.7
|
67.8
|
0.5
|
CA
|
A:ILE427
|
4.7
|
0.0
|
1.0
|
C
|
A:VAL408
|
4.7
|
99.0
|
1.0
|
N
|
A:VAL456
|
4.7
|
100.0
|
1.0
|
N
|
A:PRO498
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP289
|
4.7
|
99.7
|
1.0
|
CD1
|
A:PHE290
|
4.7
|
99.0
|
1.0
|
CE2
|
A:PHE331
|
4.7
|
96.7
|
1.0
|
C
|
A:SER398
|
4.7
|
0.0
|
1.0
|
N
|
A:LEU502
|
4.7
|
0.0
|
1.0
|
CA
|
A:MET447
|
4.7
|
86.8
|
1.0
|
CA
|
A:VAL321
|
4.7
|
0.0
|
1.0
|
N
|
A:ASP289
|
4.7
|
0.0
|
1.0
|
O
|
A:GLU397
|
4.8
|
0.0
|
1.0
|
CB
|
A:GLN295
|
4.8
|
77.0
|
1.0
|
CD
|
A:GLN295
|
4.8
|
77.0
|
1.0
|
C
|
A:THR458
|
4.8
|
89.0
|
1.0
|
O6
|
A:NAG808
|
4.8
|
83.7
|
0.5
|
C
|
A:LEU496
|
4.8
|
89.3
|
1.0
|
O
|
A:GLU453
|
4.8
|
0.0
|
1.0
|
O
|
A:PRO452
|
4.8
|
99.8
|
1.0
|
C
|
A:VAL439
|
4.8
|
53.0
|
1.0
|
CA
|
A:GLN450
|
4.8
|
0.0
|
1.0
|
CB
|
A:THR423
|
4.8
|
95.4
|
1.0
|
CD
|
A:PRO359
|
4.8
|
92.7
|
1.0
|
O
|
A:PRO330
|
4.8
|
43.9
|
1.0
|
CA
|
A:TYR400
|
4.9
|
0.0
|
1.0
|
N
|
A:VAL321
|
4.9
|
0.0
|
1.0
|
C
|
A:GLN500
|
4.9
|
0.0
|
1.0
|
CB
|
A:ILE409
|
4.9
|
52.3
|
1.0
|
C
|
A:PRO452
|
4.9
|
99.8
|
1.0
|
N
|
A:ARG293
|
4.9
|
59.5
|
1.0
|
CA
|
A:VAL408
|
4.9
|
99.0
|
1.0
|
CA
|
A:ARG293
|
4.9
|
59.5
|
1.0
|
C
|
A:GLU399
|
4.9
|
97.0
|
1.0
|
CB
|
A:TYR406
|
4.9
|
84.1
|
1.0
|
N
|
A:ASN451
|
4.9
|
99.7
|
1.0
|
CA
|
A:ASN451
|
4.9
|
99.7
|
1.0
|
OD1
|
A:ASP289
|
4.9
|
99.7
|
1.0
|
CA
|
A:THR458
|
4.9
|
89.0
|
1.0
|
O
|
A:LEU502
|
5.0
|
0.0
|
1.0
|
C
|
A:THR320
|
5.0
|
81.8
|
1.0
|
O3
|
A:NDG811
|
5.0
|
0.0
|
0.8
|
|
Calcium binding site 8 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 8 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca912
b:90.9
occ:1.00
|
O
|
A:VAL524
|
0.6
|
0.0
|
1.0
|
CD1
|
A:TYR507
|
0.6
|
0.0
|
1.0
|
OD1
|
A:ASN327
|
0.6
|
0.0
|
1.0
|
N
|
A:VAL525
|
0.7
|
0.0
|
1.0
|
CA
|
A:MET410
|
0.7
|
74.1
|
1.0
|
CD
|
A:PRO330
|
0.8
|
43.9
|
1.0
|
CD2
|
A:LEU502
|
0.8
|
100.0
|
1.0
|
C
|
A:VAL524
|
0.9
|
0.0
|
1.0
|
CE1
|
A:TYR507
|
0.9
|
0.0
|
1.0
|
CG
|
A:ASN327
|
0.9
|
0.0
|
1.0
|
OH
|
A:TYR406
|
1.0
|
84.1
|
1.0
|
C
|
A:MET410
|
1.0
|
74.1
|
1.0
|
CG1
|
A:VAL408
|
1.0
|
56.5
|
1.0
|
CG
|
A:PRO330
|
1.0
|
43.9
|
1.0
|
CB
|
A:MET410
|
1.0
|
99.6
|
1.0
|
N
|
A:LEU411
|
1.1
|
61.9
|
1.0
|
CZ
|
A:TYR406
|
1.2
|
84.1
|
1.0
|
CG1
|
A:VAL412
|
1.3
|
42.6
|
1.0
|
CA
|
A:LEU411
|
1.3
|
61.9
|
1.0
|
N
|
A:VAL412
|
1.3
|
0.0
|
1.0
|
C
|
A:LEU411
|
1.3
|
61.9
|
1.0
|
ND2
|
A:ASN327
|
1.5
|
0.0
|
1.0
|
CA
|
A:VAL525
|
1.6
|
0.0
|
1.0
|
C
|
A:VAL525
|
1.6
|
0.0
|
1.0
|
CA
|
A:SER508
|
1.7
|
0.0
|
1.0
|
C
|
A:SER508
|
1.7
|
0.0
|
1.0
|
O
|
A:ILE409
|
1.7
|
99.5
|
1.0
|
CG
|
A:LEU502
|
1.7
|
100.0
|
1.0
|
O
|
A:VAL412
|
1.8
|
0.0
|
1.0
|
CE2
|
A:TYR406
|
1.8
|
84.1
|
1.0
|
NE2
|
A:GLN362
|
1.8
|
0.0
|
1.0
|
CD1
|
A:LEU502
|
1.8
|
100.0
|
1.0
|
CZ
|
A:TYR507
|
1.8
|
0.0
|
1.0
|
OD2
|
A:ASP358
|
1.8
|
96.2
|
1.0
|
CG
|
A:MET410
|
1.8
|
99.6
|
1.0
|
N
|
A:MET410
|
1.9
|
74.1
|
1.0
|
CG
|
A:TYR507
|
1.9
|
0.0
|
1.0
|
CA
|
A:VAL412
|
1.9
|
0.0
|
1.0
|
O
|
A:VAL525
|
1.9
|
0.0
|
1.0
|
O
|
A:TYR507
|
1.9
|
0.0
|
1.0
|
CB
|
A:VAL412
|
2.0
|
42.6
|
1.0
|
O
|
A:MET410
|
2.0
|
74.1
|
1.0
|
N
|
A:ILE509
|
2.0
|
85.9
|
1.0
|
CB
|
A:ASN327
|
2.0
|
0.0
|
1.0
|
N
|
A:ASN526
|
2.0
|
0.0
|
1.0
|
O
|
A:SER508
|
2.0
|
0.0
|
1.0
|
CZ
|
A:PHE332
|
2.1
|
99.8
|
1.0
|
N
|
A:PRO330
|
2.1
|
43.9
|
1.0
|
O
|
A:GLU328
|
2.1
|
0.0
|
1.0
|
OD1
|
A:ASP360
|
2.1
|
90.8
|
1.0
|
O
|
A:LEU411
|
2.2
|
61.9
|
1.0
|
C
|
A:VAL412
|
2.2
|
0.0
|
1.0
|
C
|
A:ILE409
|
2.2
|
99.5
|
1.0
|
CE1
|
A:TYR406
|
2.2
|
84.1
|
1.0
|
CB
|
A:LEU502
|
2.2
|
100.0
|
1.0
|
CB
|
A:ASP414
|
2.2
|
82.2
|
1.0
|
OD1
|
A:ASP325
|
2.2
|
64.5
|
1.0
|
CG2
|
A:VAL408
|
2.2
|
56.5
|
1.0
|
CG
|
A:ASP414
|
2.3
|
82.2
|
1.0
|
CA
|
A:VAL524
|
2.3
|
0.0
|
1.0
|
CB
|
A:VAL408
|
2.3
|
56.5
|
1.0
|
OD2
|
A:ASP414
|
2.3
|
82.2
|
1.0
|
C
|
A:TYR507
|
2.3
|
0.0
|
1.0
|
CB
|
A:PRO330
|
2.4
|
43.9
|
1.0
|
N
|
A:LYS503
|
2.4
|
0.0
|
1.0
|
CD
|
A:GLN362
|
2.4
|
0.0
|
1.0
|
N
|
A:SER508
|
2.4
|
0.0
|
1.0
|
CE2
|
A:TYR507
|
2.4
|
0.0
|
1.0
|
OE1
|
A:GLN365
|
2.4
|
0.0
|
1.0
|
CZ2
|
A:TRP378
|
2.5
|
0.0
|
1.0
|
CG
|
A:ASP360
|
2.5
|
90.8
|
1.0
|
CD2
|
A:TYR507
|
2.5
|
0.0
|
1.0
|
NE
|
A:ARG443
|
2.6
|
95.2
|
1.0
|
CA
|
A:LEU502
|
2.6
|
0.0
|
1.0
|
CA
|
A:ASN526
|
2.6
|
0.0
|
1.0
|
OE1
|
A:GLN362
|
2.6
|
0.0
|
1.0
|
CB
|
A:SER508
|
2.6
|
76.8
|
1.0
|
CH2
|
A:TRP378
|
2.7
|
0.0
|
1.0
|
OD1
|
A:ASP414
|
2.7
|
82.2
|
1.0
|
O
|
A:GLY422
|
2.7
|
72.5
|
1.0
|
CG2
|
A:THR523
|
2.7
|
0.0
|
1.0
|
CD1
|
A:TYR400
|
2.7
|
0.0
|
1.0
|
CB
|
A:SER398
|
2.7
|
0.0
|
1.0
|
CA
|
A:ASN327
|
2.8
|
0.0
|
1.0
|
CB
|
A:LEU411
|
2.8
|
78.1
|
1.0
|
CB
|
A:VAL525
|
2.8
|
54.0
|
1.0
|
CA
|
A:PRO330
|
2.8
|
43.9
|
1.0
|
CG2
|
A:VAL412
|
2.9
|
42.6
|
1.0
|
OH
|
A:TYR507
|
2.9
|
0.0
|
1.0
|
CE1
|
A:PHE332
|
2.9
|
99.8
|
1.0
|
CG2
|
A:VAL525
|
2.9
|
54.0
|
1.0
|
C
|
A:ALA329
|
2.9
|
93.5
|
1.0
|
CG
|
A:LYS503
|
2.9
|
100.0
|
1.0
|
CG
|
A:ASP358
|
3.0
|
96.2
|
1.0
|
O
|
A:PRO375
|
3.0
|
0.0
|
1.0
|
CB
|
A:ASP360
|
3.0
|
90.8
|
1.0
|
CG2
|
A:ILE509
|
3.0
|
50.8
|
1.0
|
C
|
A:LEU502
|
3.0
|
0.0
|
1.0
|
CB
|
A:ASP325
|
3.0
|
64.5
|
1.0
|
N
|
A:GLU399
|
3.1
|
97.0
|
1.0
|
CE2
|
A:PHE332
|
3.1
|
99.8
|
1.0
|
N
|
A:GLY422
|
3.1
|
72.5
|
1.0
|
OD2
|
A:ASP360
|
3.1
|
90.8
|
1.0
|
CG
|
A:ASP325
|
3.1
|
64.5
|
1.0
|
CB
|
A:VAL524
|
3.1
|
0.0
|
1.0
|
CA
|
A:ALA329
|
3.1
|
93.5
|
1.0
|
NH2
|
A:ARG443
|
3.1
|
95.2
|
1.0
|
CB
|
A:TYR507
|
3.1
|
0.0
|
1.0
|
CD2
|
A:TYR406
|
3.1
|
84.1
|
1.0
|
SD
|
A:MET410
|
3.1
|
99.6
|
1.0
|
N
|
A:VAL524
|
3.1
|
0.0
|
1.0
|
O
|
A:PHE370
|
3.1
|
63.2
|
1.0
|
C
|
A:GLU328
|
3.2
|
0.0
|
1.0
|
OD1
|
A:ASP358
|
3.2
|
96.2
|
1.0
|
N
|
A:THR413
|
3.2
|
99.8
|
1.0
|
OG
|
A:SER398
|
3.2
|
0.0
|
1.0
|
CA
|
A:GLY422
|
3.2
|
72.5
|
1.0
|
CA
|
A:ASP414
|
3.2
|
82.6
|
1.0
|
OD1
|
A:ASN526
|
3.2
|
97.7
|
1.0
|
CA
|
A:ILE509
|
3.3
|
85.9
|
1.0
|
N
|
A:ASP414
|
3.3
|
82.6
|
1.0
|
CD1
|
A:TYR406
|
3.3
|
84.1
|
1.0
|
N
|
A:ILE409
|
3.3
|
99.5
|
1.0
|
CD
|
A:ARG443
|
3.3
|
95.2
|
1.0
|
CG2
|
A:ILE371
|
3.3
|
0.0
|
1.0
|
N
|
A:GLY372
|
3.3
|
0.0
|
1.0
|
C
|
A:ASN526
|
3.3
|
0.0
|
1.0
|
CZ3
|
A:TRP378
|
3.4
|
0.0
|
1.0
|
CB
|
A:GLU399
|
3.4
|
0.0
|
1.0
|
CA
|
A:VAL408
|
3.4
|
99.0
|
1.0
|
C
|
A:ASN327
|
3.4
|
0.0
|
1.0
|
CE2
|
A:TRP378
|
3.4
|
0.0
|
1.0
|
CZ
|
A:ARG443
|
3.4
|
95.2
|
1.0
|
CB
|
A:LYS503
|
3.4
|
100.0
|
1.0
|
CG
|
A:GLN362
|
3.4
|
0.0
|
1.0
|
CA
|
A:ILE409
|
3.4
|
99.5
|
1.0
|
CD1
|
A:LEU379
|
3.5
|
0.0
|
1.0
|
CA
|
A:LYS503
|
3.5
|
0.0
|
1.0
|
CD
|
A:GLN365
|
3.5
|
0.0
|
1.0
|
O
|
A:PRO330
|
3.5
|
43.9
|
1.0
|
N
|
A:GLU328
|
3.5
|
0.0
|
1.0
|
CZ2
|
A:TRP483
|
3.5
|
0.0
|
1.0
|
CE1
|
A:TYR400
|
3.5
|
0.0
|
1.0
|
CA
|
A:TYR507
|
3.5
|
0.0
|
1.0
|
O
|
A:ILE509
|
3.5
|
85.9
|
1.0
|
CG
|
A:TYR400
|
3.5
|
0.0
|
1.0
|
NE2
|
A:GLN365
|
3.5
|
0.0
|
1.0
|
C
|
A:GLY422
|
3.5
|
72.5
|
1.0
|
C
|
A:PRO330
|
3.6
|
43.9
|
1.0
|
N
|
A:ALA527
|
3.6
|
90.4
|
1.0
|
CB
|
A:ILE509
|
3.6
|
50.8
|
1.0
|
C
|
A:SER398
|
3.6
|
0.0
|
1.0
|
O
|
A:ASN373
|
3.6
|
0.0
|
1.0
|
CG2
|
A:VAL524
|
3.6
|
0.0
|
1.0
|
C
|
A:VAL408
|
3.6
|
99.0
|
1.0
|
CA
|
A:ILE371
|
3.6
|
92.8
|
1.0
|
CA
|
A:SER398
|
3.6
|
0.0
|
1.0
|
C
|
A:THR421
|
3.6
|
0.0
|
1.0
|
CA
|
A:THR413
|
3.7
|
99.8
|
1.0
|
N
|
A:ASN373
|
3.7
|
0.0
|
1.0
|
N
|
A:ALA329
|
3.7
|
93.5
|
1.0
|
C
|
A:PRO375
|
3.7
|
0.0
|
1.0
|
CG
|
A:TYR406
|
3.7
|
84.1
|
1.0
|
CB
|
A:TYR400
|
3.7
|
0.0
|
1.0
|
C
|
A:THR413
|
3.7
|
99.8
|
1.0
|
CB
|
A:ALA527
|
3.8
|
90.4
|
1.0
|
CG
|
A:ARG443
|
3.8
|
95.2
|
1.0
|
CB
|
A:GLN362
|
3.8
|
0.0
|
1.0
|
CG
|
A:LEU411
|
3.8
|
78.1
|
1.0
|
C
|
A:THR523
|
3.8
|
0.0
|
1.0
|
N
|
A:ASN327
|
3.8
|
0.0
|
1.0
|
CE3
|
A:TRP378
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASN526
|
3.8
|
97.7
|
1.0
|
CA
|
A:GLU399
|
3.8
|
97.0
|
1.0
|
N
|
A:LEU502
|
3.8
|
0.0
|
1.0
|
O
|
A:ALA376
|
3.8
|
81.9
|
1.0
|
C
|
A:ILE371
|
3.8
|
92.8
|
1.0
|
CD
|
A:LYS503
|
3.9
|
100.0
|
1.0
|
OG
|
A:SER508
|
3.9
|
76.8
|
1.0
|
NE1
|
A:TRP483
|
3.9
|
0.0
|
1.0
|
CD2
|
A:LEU411
|
3.9
|
78.1
|
1.0
|
CD1
|
A:ILE371
|
3.9
|
0.0
|
1.0
|
CD2
|
A:TRP378
|
3.9
|
0.0
|
1.0
|
CG
|
A:ASN526
|
4.0
|
97.7
|
1.0
|
C
|
A:ILE509
|
4.0
|
85.9
|
1.0
|
O
|
A:ALA329
|
4.0
|
93.5
|
1.0
|
CB
|
A:ILE371
|
4.0
|
0.0
|
1.0
|
CG1
|
A:ILE371
|
4.0
|
0.0
|
1.0
|
CG1
|
A:VAL525
|
4.0
|
54.0
|
1.0
|
O
|
A:ASN526
|
4.0
|
0.0
|
1.0
|
CA
|
A:GLU328
|
4.0
|
0.0
|
1.0
|
O
|
A:ASN327
|
4.0
|
0.0
|
1.0
|
CD1
|
A:LEU522
|
4.1
|
0.0
|
1.0
|
CB
|
A:THR523
|
4.1
|
0.0
|
1.0
|
CE2
|
A:TRP483
|
4.1
|
0.0
|
1.0
|
CE
|
A:LYS503
|
4.1
|
100.0
|
1.0
|
C
|
A:ASN373
|
4.1
|
0.0
|
1.0
|
O
|
A:THR523
|
4.1
|
0.0
|
1.0
|
O
|
A:THR421
|
4.1
|
0.0
|
1.0
|
N
|
A:TYR400
|
4.1
|
0.0
|
1.0
|
CB
|
A:ALA329
|
4.1
|
93.5
|
1.0
|
CA
|
A:THR421
|
4.1
|
0.0
|
1.0
|
N
|
A:SER398
|
4.1
|
0.0
|
1.0
|
N
|
A:THR421
|
4.1
|
0.0
|
1.0
|
CD1
|
A:PHE332
|
4.1
|
99.8
|
1.0
|
CB
|
A:ASP358
|
4.1
|
96.2
|
1.0
|
OD2
|
A:ASP325
|
4.1
|
64.5
|
1.0
|
CE
|
A:MET410
|
4.1
|
99.6
|
1.0
|
CD2
|
A:LEU379
|
4.1
|
0.0
|
1.0
|
C8
|
A:NAG904
|
4.2
|
27.2
|
0.5
|
NZ
|
A:LYS294
|
4.2
|
100.0
|
1.0
|
NE1
|
A:TRP378
|
4.2
|
0.0
|
1.0
|
CA
|
A:GLY372
|
4.2
|
0.0
|
1.0
|
C
|
A:GLY420
|
4.3
|
93.4
|
1.0
|
CB
|
A:PRO375
|
4.3
|
0.0
|
1.0
|
CA
|
A:ASP325
|
4.3
|
0.0
|
1.0
|
CG1
|
A:VAL524
|
4.3
|
0.0
|
1.0
|
O
|
A:LEU502
|
4.3
|
0.0
|
1.0
|
C
|
A:PHE370
|
4.3
|
63.2
|
1.0
|
O
|
A:VAL419
|
4.3
|
0.0
|
1.0
|
CD2
|
A:LEU522
|
4.3
|
0.0
|
1.0
|
CG1
|
A:VAL439
|
4.3
|
0.0
|
1.0
|
O
|
A:VAL408
|
4.3
|
99.0
|
1.0
|
CA
|
A:GLY420
|
4.3
|
93.4
|
1.0
|
N
|
A:ALA376
|
4.3
|
81.9
|
1.0
|
C
|
A:VAL326
|
4.3
|
0.0
|
1.0
|
CA
|
A:ASN373
|
4.3
|
0.0
|
1.0
|
CD2
|
A:PHE332
|
4.3
|
99.8
|
1.0
|
C
|
A:GLY372
|
4.4
|
0.0
|
1.0
|
CA
|
A:ASP374
|
4.4
|
0.0
|
1.0
|
CA
|
A:PRO375
|
4.4
|
0.0
|
1.0
|
O
|
A:GLY424
|
4.4
|
56.9
|
1.0
|
O
|
A:VAL326
|
4.4
|
0.0
|
1.0
|
N
|
A:PRO375
|
4.4
|
0.0
|
1.0
|
C
|
A:ASP374
|
4.4
|
0.0
|
1.0
|
CA
|
A:ALA527
|
4.4
|
90.4
|
1.0
|
C
|
A:ASP325
|
4.4
|
0.0
|
1.0
|
N
|
A:TYR507
|
4.4
|
0.0
|
1.0
|
O
|
A:ARG443
|
4.4
|
83.8
|
1.0
|
O
|
A:SER398
|
4.4
|
0.0
|
1.0
|
O
|
A:ASP325
|
4.4
|
0.0
|
1.0
|
CG
|
A:LEU379
|
4.4
|
0.0
|
1.0
|
C
|
A:ALA376
|
4.5
|
81.9
|
1.0
|
O
|
A:THR413
|
4.5
|
99.8
|
1.0
|
N
|
A:PHE331
|
4.5
|
76.3
|
1.0
|
CB
|
A:ASN373
|
4.5
|
93.9
|
1.0
|
N
|
A:ASP325
|
4.5
|
0.0
|
1.0
|
N
|
A:ASP374
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP360
|
4.5
|
65.5
|
1.0
|
CG
|
A:GLU399
|
4.5
|
0.0
|
1.0
|
O
|
A:GLY420
|
4.5
|
93.4
|
1.0
|
O
|
A:THR407
|
4.6
|
0.0
|
1.0
|
C
|
A:ASP414
|
4.6
|
82.6
|
1.0
|
N
|
A:VAL408
|
4.6
|
99.0
|
1.0
|
CB
|
A:ARG443
|
4.6
|
95.2
|
1.0
|
CH2
|
A:TRP483
|
4.6
|
0.0
|
1.0
|
CD2
|
A:TYR400
|
4.6
|
0.0
|
1.0
|
CA
|
A:THR523
|
4.6
|
0.0
|
1.0
|
CB
|
A:ILE409
|
4.6
|
52.3
|
1.0
|
O
|
A:ASP395
|
4.6
|
76.5
|
1.0
|
C
|
A:LYS503
|
4.6
|
0.0
|
1.0
|
N
|
A:ILE371
|
4.7
|
92.8
|
1.0
|
CZ
|
A:TYR400
|
4.7
|
0.0
|
1.0
|
O
|
A:LYS503
|
4.7
|
0.0
|
1.0
|
C
|
A:GLN501
|
4.7
|
0.0
|
1.0
|
CA
|
A:CA915
|
4.7
|
70.2
|
1.0
|
NH1
|
A:ARG443
|
4.7
|
95.2
|
1.0
|
C
|
A:GLU399
|
4.7
|
97.0
|
1.0
|
CA
|
A:ALA376
|
4.7
|
81.9
|
1.0
|
O
|
A:ILE371
|
4.7
|
92.8
|
1.0
|
CG
|
A:GLN365
|
4.7
|
0.0
|
1.0
|
O
|
A:LEU481
|
4.7
|
0.0
|
1.0
|
CG
|
A:PHE332
|
4.8
|
99.8
|
1.0
|
CA
|
A:TYR400
|
4.8
|
0.0
|
1.0
|
O
|
A:ASP374
|
4.8
|
0.0
|
1.0
|
N
|
A:THR423
|
4.8
|
91.3
|
1.0
|
O
|
A:GLN501
|
4.8
|
0.0
|
1.0
|
N
|
A:GLY424
|
4.9
|
56.9
|
1.0
|
N
|
A:ASP360
|
4.9
|
65.5
|
1.0
|
CG
|
A:LEU522
|
4.9
|
0.0
|
1.0
|
O
|
A:ALA527
|
4.9
|
90.4
|
1.0
|
N
|
A:VAL326
|
4.9
|
0.0
|
1.0
|
CG
|
A:PRO359
|
4.9
|
92.7
|
1.0
|
CG
|
A:TRP378
|
4.9
|
0.0
|
1.0
|
CG2
|
A:VAL401
|
5.0
|
92.7
|
1.0
|
CB
|
A:LEU367
|
5.0
|
55.1
|
1.0
|
C
|
A:THR407
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 9 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 9 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca913
b:34.6
occ:1.00
|
CD2
|
A:LEU354
|
0.4
|
26.1
|
1.0
|
CA
|
A:VAL511
|
0.8
|
0.0
|
1.0
|
N
|
A:LEU481
|
0.9
|
0.0
|
1.0
|
O
|
A:TYR510
|
1.0
|
0.0
|
1.0
|
C
|
A:VAL511
|
1.0
|
0.0
|
1.0
|
N
|
A:THR482
|
1.1
|
0.0
|
1.0
|
O
|
A:ALA356
|
1.1
|
52.5
|
1.0
|
O
|
A:VAL511
|
1.1
|
0.0
|
1.0
|
CG
|
A:LEU354
|
1.2
|
26.1
|
1.0
|
CD1
|
A:ILE352
|
1.2
|
72.5
|
1.0
|
C
|
A:TYR510
|
1.3
|
0.0
|
1.0
|
N
|
A:VAL511
|
1.3
|
0.0
|
1.0
|
N
|
A:ALA356
|
1.3
|
52.5
|
1.0
|
CA
|
A:ASN436
|
1.4
|
56.8
|
1.0
|
CB
|
A:GLN363
|
1.4
|
0.0
|
1.0
|
CB
|
A:LEU522
|
1.5
|
0.0
|
1.0
|
CB
|
A:ASN436
|
1.5
|
72.3
|
1.0
|
N
|
A:GLN362
|
1.5
|
0.0
|
1.0
|
CA
|
A:ASP395
|
1.5
|
76.5
|
1.0
|
O
|
A:GLY478
|
1.5
|
99.2
|
1.0
|
CG
|
A:GLN363
|
1.5
|
0.0
|
1.0
|
C
|
A:LEU481
|
1.6
|
0.0
|
1.0
|
CG
|
A:ASN436
|
1.6
|
72.3
|
1.0
|
CA
|
A:LEU522
|
1.7
|
0.0
|
1.0
|
C
|
A:LYS361
|
1.7
|
71.2
|
1.0
|
CA
|
A:ALA356
|
1.7
|
52.5
|
1.0
|
CD1
|
A:LEU428
|
1.8
|
63.9
|
1.0
|
CD1
|
A:LEU354
|
1.8
|
26.1
|
1.0
|
N
|
A:LEU522
|
1.8
|
0.0
|
1.0
|
O
|
A:LYS361
|
1.8
|
71.2
|
1.0
|
CA
|
A:LEU481
|
1.8
|
0.0
|
1.0
|
N
|
A:ASN436
|
1.8
|
56.8
|
1.0
|
C
|
A:ALA356
|
1.9
|
52.5
|
1.0
|
O
|
A:GLN521
|
1.9
|
0.0
|
1.0
|
N
|
A:ARG396
|
1.9
|
89.7
|
1.0
|
OE1
|
A:GLU343
|
1.9
|
72.9
|
1.0
|
CB
|
A:ALA356
|
1.9
|
52.5
|
1.0
|
CD
|
A:GLU343
|
2.0
|
72.9
|
1.0
|
C
|
A:ASP395
|
2.0
|
76.5
|
1.0
|
OD1
|
A:ASN436
|
2.0
|
72.3
|
1.0
|
N
|
A:GLN363
|
2.0
|
0.0
|
1.0
|
CG
|
A:ASP435
|
2.0
|
64.9
|
1.0
|
CB
|
A:VAL511
|
2.0
|
48.3
|
1.0
|
CB
|
A:ASP435
|
2.0
|
64.9
|
1.0
|
C
|
A:ASP480
|
2.0
|
0.0
|
1.0
|
C
|
A:VAL355
|
2.1
|
83.7
|
1.0
|
N
|
A:ASP395
|
2.1
|
76.5
|
1.0
|
CA
|
A:LYS361
|
2.1
|
71.2
|
1.0
|
CG1
|
A:ILE352
|
2.1
|
72.5
|
1.0
|
ND2
|
A:ASN436
|
2.1
|
72.3
|
1.0
|
CB
|
A:LEU354
|
2.1
|
26.1
|
1.0
|
OD2
|
A:ASP395
|
2.1
|
88.0
|
1.0
|
C
|
A:GLN521
|
2.2
|
0.0
|
1.0
|
CG
|
A:ASP395
|
2.2
|
88.0
|
1.0
|
N
|
A:LEU512
|
2.3
|
39.9
|
1.0
|
OE2
|
A:GLU343
|
2.3
|
72.9
|
1.0
|
CD2
|
A:LEU394
|
2.3
|
96.3
|
1.0
|
N
|
A:GLY437
|
2.3
|
93.1
|
1.0
|
CA
|
A:THR482
|
2.3
|
0.0
|
1.0
|
OD1
|
A:ASP435
|
2.3
|
64.9
|
1.0
|
O
|
A:PRO520
|
2.4
|
95.2
|
1.0
|
CA
|
A:GLN362
|
2.4
|
0.0
|
1.0
|
NZ
|
A:LYS361
|
2.4
|
99.8
|
1.0
|
CB
|
A:PRO520
|
2.4
|
95.2
|
1.0
|
OD2
|
A:ASP435
|
2.4
|
64.9
|
1.0
|
CD
|
A:GLN500
|
2.4
|
100.0
|
1.0
|
OG1
|
A:THR482
|
2.4
|
0.0
|
1.0
|
O
|
A:ASP360
|
2.4
|
65.5
|
1.0
|
CG
|
A:LEU522
|
2.4
|
0.0
|
1.0
|
CA
|
A:GLN363
|
2.4
|
0.0
|
1.0
|
CB
|
A:LEU394
|
2.4
|
96.3
|
1.0
|
CG2
|
A:VAL388
|
2.4
|
72.7
|
1.0
|
OE1
|
A:GLU397
|
2.4
|
75.5
|
1.0
|
CG
|
A:GLU343
|
2.4
|
72.9
|
1.0
|
NE2
|
A:GLN500
|
2.4
|
100.0
|
1.0
|
OD1
|
A:ASP395
|
2.5
|
88.0
|
1.0
|
CD
|
A:GLN363
|
2.5
|
0.0
|
1.0
|
C
|
A:GLY478
|
2.5
|
99.2
|
1.0
|
CG
|
A:GLN500
|
2.5
|
100.0
|
1.0
|
C
|
A:ASN436
|
2.5
|
56.8
|
1.0
|
CA
|
A:VAL355
|
2.6
|
83.7
|
1.0
|
CD1
|
A:TRP483
|
2.6
|
0.0
|
1.0
|
CA
|
A:TYR510
|
2.6
|
0.0
|
1.0
|
C
|
A:LEU522
|
2.6
|
0.0
|
1.0
|
CB
|
A:ASP395
|
2.6
|
88.0
|
1.0
|
CB
|
A:LEU481
|
2.7
|
72.1
|
1.0
|
CD2
|
A:LEU475
|
2.7
|
54.0
|
1.0
|
N
|
A:THR523
|
2.7
|
0.0
|
1.0
|
O
|
A:VAL355
|
2.7
|
83.7
|
1.0
|
O
|
A:LEU481
|
2.7
|
0.0
|
1.0
|
O
|
A:GLY437
|
2.7
|
93.1
|
1.0
|
N
|
A:GLN357
|
2.8
|
67.7
|
1.0
|
C
|
A:LEU394
|
2.8
|
71.8
|
1.0
|
OE1
|
A:GLN363
|
2.8
|
0.0
|
1.0
|
CA
|
A:GLN357
|
2.8
|
67.7
|
1.0
|
N
|
A:ASP358
|
2.8
|
99.7
|
1.0
|
C
|
A:GLN362
|
2.8
|
0.0
|
1.0
|
CB
|
A:THR482
|
2.8
|
0.0
|
1.0
|
CA
|
A:ASP480
|
2.8
|
0.0
|
1.0
|
OE1
|
A:GLN500
|
2.8
|
100.0
|
1.0
|
N
|
A:TYR510
|
2.8
|
0.0
|
1.0
|
CG
|
A:LYS361
|
2.9
|
99.8
|
1.0
|
CB
|
A:LYS361
|
2.9
|
99.8
|
1.0
|
C
|
A:ASP435
|
2.9
|
99.6
|
1.0
|
O
|
A:PRO438
|
2.9
|
75.9
|
1.0
|
CG2
|
A:VAL511
|
3.0
|
48.3
|
1.0
|
CG1
|
A:VAL388
|
3.0
|
72.7
|
1.0
|
C
|
A:PRO520
|
3.0
|
95.2
|
1.0
|
CB
|
A:VAL388
|
3.0
|
72.7
|
1.0
|
N
|
A:ASP480
|
3.0
|
0.0
|
1.0
|
N
|
A:VAL355
|
3.0
|
83.7
|
1.0
|
O
|
A:ASP480
|
3.0
|
0.0
|
1.0
|
N
|
A:LYS361
|
3.1
|
71.2
|
1.0
|
CG1
|
A:VAL511
|
3.1
|
48.3
|
1.0
|
O
|
A:ASP358
|
3.1
|
99.7
|
1.0
|
CA
|
A:LEU512
|
3.1
|
39.9
|
1.0
|
CE2
|
A:TYR369
|
3.1
|
55.3
|
1.0
|
CG
|
A:LEU394
|
3.1
|
96.3
|
1.0
|
CB
|
A:TRP483
|
3.1
|
0.0
|
1.0
|
N
|
A:GLN521
|
3.1
|
0.0
|
1.0
|
CE
|
A:LYS361
|
3.1
|
99.8
|
1.0
|
CD1
|
A:ILE351
|
3.1
|
27.4
|
1.0
|
CG
|
A:LEU428
|
3.2
|
63.9
|
1.0
|
CG1
|
A:ILE509
|
3.2
|
50.8
|
1.0
|
C
|
A:THR482
|
3.2
|
0.0
|
1.0
|
C
|
A:LEU354
|
3.2
|
62.9
|
1.0
|
O
|
A:ASP395
|
3.2
|
76.5
|
1.0
|
CA
|
A:GLY437
|
3.2
|
93.1
|
1.0
|
C
|
A:ASP360
|
3.2
|
65.5
|
1.0
|
CG
|
A:TRP483
|
3.2
|
0.0
|
1.0
|
CA
|
A:ARG396
|
3.2
|
89.7
|
1.0
|
CA
|
A:ASP435
|
3.2
|
99.6
|
1.0
|
C
|
A:GLY437
|
3.2
|
93.1
|
1.0
|
CB
|
A:GLU343
|
3.3
|
72.9
|
1.0
|
CG
|
A:PRO520
|
3.3
|
95.2
|
1.0
|
CE
|
A:MET410
|
3.3
|
99.6
|
1.0
|
O
|
A:LEU394
|
3.3
|
71.8
|
1.0
|
CG1
|
A:VAL430
|
3.3
|
99.6
|
1.0
|
C
|
A:GLN357
|
3.3
|
67.7
|
1.0
|
CD
|
A:GLU397
|
3.3
|
75.5
|
1.0
|
OH
|
A:TYR369
|
3.3
|
55.3
|
1.0
|
CB
|
A:ILE352
|
3.3
|
72.5
|
1.0
|
NE2
|
A:GLN363
|
3.3
|
0.0
|
1.0
|
CA
|
A:GLY478
|
3.4
|
99.2
|
1.0
|
CG
|
A:GLU397
|
3.4
|
75.5
|
1.0
|
O
|
A:THR523
|
3.4
|
0.0
|
1.0
|
CA
|
A:GLN521
|
3.4
|
0.0
|
1.0
|
N
|
A:TRP483
|
3.4
|
99.9
|
1.0
|
CA
|
A:LEU394
|
3.4
|
71.8
|
1.0
|
CB
|
A:ASP358
|
3.4
|
96.2
|
1.0
|
CD2
|
A:LEU522
|
3.4
|
0.0
|
1.0
|
CB
|
A:GLU397
|
3.4
|
75.5
|
1.0
|
CG2
|
A:ILE351
|
3.4
|
27.4
|
1.0
|
CB
|
A:LEU475
|
3.4
|
54.0
|
1.0
|
CA
|
A:LEU354
|
3.4
|
62.9
|
1.0
|
C
|
A:ILE509
|
3.4
|
85.9
|
1.0
|
N
|
A:SER479
|
3.5
|
82.9
|
1.0
|
CA
|
A:PRO520
|
3.5
|
95.2
|
1.0
|
O
|
A:LEU522
|
3.5
|
0.0
|
1.0
|
CB
|
A:TYR510
|
3.5
|
0.0
|
1.0
|
N
|
A:GLU397
|
3.5
|
0.0
|
1.0
|
CB
|
A:GLN500
|
3.6
|
100.0
|
1.0
|
O
|
A:LEU354
|
3.6
|
62.9
|
1.0
|
CA
|
A:LEU475
|
3.6
|
0.0
|
1.0
|
CD1
|
A:LEU522
|
3.6
|
0.0
|
1.0
|
C
|
A:SER479
|
3.6
|
82.9
|
1.0
|
CG
|
A:LEU475
|
3.7
|
54.0
|
1.0
|
CA
|
A:CA916
|
3.7
|
85.4
|
1.0
|
CB
|
A:GLN362
|
3.7
|
0.0
|
1.0
|
CA
|
A:ASP358
|
3.7
|
99.7
|
1.0
|
C
|
A:GLN363
|
3.7
|
0.0
|
1.0
|
O
|
A:ASN436
|
3.7
|
56.8
|
1.0
|
O
|
A:ASP435
|
3.7
|
99.6
|
1.0
|
NE1
|
A:TRP483
|
3.7
|
0.0
|
1.0
|
O
|
A:SER474
|
3.8
|
99.2
|
1.0
|
CA
|
A:SER479
|
3.8
|
82.9
|
1.0
|
CZ
|
A:TYR369
|
3.8
|
55.3
|
1.0
|
O
|
A:ILE509
|
3.8
|
85.9
|
1.0
|
CA
|
A:THR523
|
3.8
|
0.0
|
1.0
|
CB
|
A:VAL355
|
3.8
|
82.9
|
1.0
|
O
|
A:THR482
|
3.8
|
0.0
|
1.0
|
CG2
|
A:VAL439
|
3.8
|
0.0
|
1.0
|
C
|
A:ASP358
|
3.8
|
99.7
|
1.0
|
O
|
A:ILE352
|
3.8
|
76.5
|
1.0
|
CA
|
A:GLU343
|
3.9
|
0.0
|
1.0
|
CD1
|
A:LEU426
|
3.9
|
100.0
|
1.0
|
CD1
|
A:PHE332
|
3.9
|
99.8
|
1.0
|
OE1
|
A:GLN357
|
3.9
|
96.0
|
1.0
|
CD
|
A:LYS361
|
3.9
|
99.8
|
1.0
|
CG
|
A:LEU481
|
3.9
|
72.1
|
1.0
|
CD2
|
A:TYR369
|
3.9
|
55.3
|
1.0
|
CB
|
A:LEU512
|
3.9
|
36.9
|
1.0
|
CB
|
A:ARG396
|
3.9
|
100.0
|
1.0
|
O
|
A:GLN362
|
3.9
|
0.0
|
1.0
|
CB
|
A:LEU428
|
4.0
|
63.9
|
1.0
|
CZ3
|
A:TRP378
|
4.0
|
0.0
|
1.0
|
CA
|
A:TRP483
|
4.0
|
99.9
|
1.0
|
C
|
A:PRO438
|
4.0
|
75.9
|
1.0
|
C
|
A:ARG396
|
4.0
|
89.7
|
1.0
|
CD2
|
A:LEU367
|
4.0
|
55.1
|
1.0
|
CD1
|
A:ILE509
|
4.0
|
50.8
|
1.0
|
CB
|
A:ASP480
|
4.0
|
0.0
|
1.0
|
CG2
|
A:VAL430
|
4.0
|
99.6
|
1.0
|
CD2
|
A:LEU428
|
4.0
|
63.9
|
1.0
|
N
|
A:SER476
|
4.0
|
99.4
|
1.0
|
O
|
A:GLN363
|
4.1
|
0.0
|
1.0
|
CA
|
A:ILE509
|
4.1
|
85.9
|
1.0
|
C
|
A:THR523
|
4.1
|
0.0
|
1.0
|
CB
|
A:GLN357
|
4.1
|
96.0
|
1.0
|
CG
|
A:LEU426
|
4.1
|
100.0
|
1.0
|
CB
|
A:ILE509
|
4.1
|
50.8
|
1.0
|
CD1
|
A:LEU481
|
4.1
|
72.1
|
1.0
|
CG2
|
A:ILE352
|
4.1
|
72.5
|
1.0
|
N
|
A:ASP435
|
4.1
|
99.6
|
1.0
|
CB
|
A:ILE351
|
4.1
|
27.4
|
1.0
|
CG1
|
A:VAL341
|
4.1
|
31.7
|
1.0
|
CE3
|
A:TRP378
|
4.1
|
0.0
|
1.0
|
C
|
A:LEU512
|
4.2
|
39.9
|
1.0
|
N
|
A:LEU354
|
4.2
|
62.9
|
1.0
|
O
|
A:GLN357
|
4.2
|
67.7
|
1.0
|
CG2
|
A:THR482
|
4.2
|
0.0
|
1.0
|
C
|
A:LEU475
|
4.2
|
0.0
|
1.0
|
N
|
A:LEU513
|
4.2
|
0.0
|
1.0
|
N
|
A:PRO438
|
4.2
|
75.9
|
1.0
|
CA
|
A:GLU397
|
4.3
|
0.0
|
1.0
|
SD
|
A:MET410
|
4.3
|
99.6
|
1.0
|
CD1
|
A:LEU475
|
4.3
|
54.0
|
1.0
|
CG2
|
A:VAL339
|
4.3
|
49.8
|
1.0
|
OD1
|
A:ASP480
|
4.3
|
0.0
|
1.0
|
OE2
|
A:GLU397
|
4.3
|
75.5
|
1.0
|
CB
|
A:GLN521
|
4.3
|
0.0
|
1.0
|
OD1
|
A:ASP358
|
4.4
|
96.2
|
1.0
|
N
|
A:GLY478
|
4.4
|
99.2
|
1.0
|
O
|
A:SER479
|
4.4
|
82.9
|
1.0
|
CB
|
A:VAL430
|
4.4
|
99.6
|
1.0
|
CG1
|
A:ILE351
|
4.4
|
27.4
|
1.0
|
CG
|
A:GLN357
|
4.4
|
96.0
|
1.0
|
CD1
|
A:LEU394
|
4.5
|
96.3
|
1.0
|
CA
|
A:PHE332
|
4.5
|
0.0
|
1.0
|
O
|
A:PHE331
|
4.5
|
76.3
|
1.0
|
CA
|
A:ILE352
|
4.5
|
76.5
|
1.0
|
CA
|
A:VAL388
|
4.5
|
60.0
|
1.0
|
CD2
|
A:LEU426
|
4.5
|
100.0
|
1.0
|
CD2
|
A:TRP483
|
4.5
|
0.0
|
1.0
|
N
|
A:LEU394
|
4.5
|
71.8
|
1.0
|
O
|
A:PRO359
|
4.5
|
92.7
|
1.0
|
CG
|
A:ASP358
|
4.5
|
96.2
|
1.0
|
CE1
|
A:PHE332
|
4.5
|
99.8
|
1.0
|
CD
|
A:PRO520
|
4.6
|
95.2
|
1.0
|
CB
|
A:PHE332
|
4.6
|
99.8
|
1.0
|
C
|
A:ILE352
|
4.6
|
76.5
|
1.0
|
O
|
A:TRP483
|
4.6
|
99.9
|
1.0
|
CA
|
A:ASP360
|
4.6
|
65.5
|
1.0
|
N
|
A:PRO520
|
4.6
|
95.2
|
1.0
|
CG
|
A:PHE332
|
4.6
|
99.8
|
1.0
|
CH2
|
A:TRP378
|
4.6
|
0.0
|
1.0
|
O
|
A:GLU343
|
4.7
|
0.0
|
1.0
|
CG
|
A:ASP480
|
4.7
|
0.0
|
1.0
|
OD2
|
A:ASP463
|
4.7
|
90.9
|
1.0
|
CD2
|
A:LEU379
|
4.7
|
0.0
|
1.0
|
N
|
A:GLU343
|
4.7
|
0.0
|
1.0
|
N
|
A:ILE352
|
4.7
|
76.5
|
1.0
|
CA
|
A:PRO438
|
4.7
|
75.9
|
1.0
|
CD
|
A:GLN357
|
4.7
|
96.0
|
1.0
|
O
|
A:GLY386
|
4.7
|
57.8
|
1.0
|
CE2
|
A:TRP483
|
4.8
|
0.0
|
1.0
|
N
|
A:ILE364
|
4.8
|
0.0
|
1.0
|
C
|
A:SER474
|
4.8
|
99.2
|
1.0
|
CG1
|
A:VAL355
|
4.8
|
82.9
|
1.0
|
C
|
A:GLU343
|
4.8
|
0.0
|
1.0
|
C
|
A:TRP483
|
4.8
|
99.9
|
1.0
|
CG
|
A:GLN362
|
4.8
|
0.0
|
1.0
|
CB
|
A:THR523
|
4.8
|
0.0
|
1.0
|
CG2
|
A:VAL355
|
4.8
|
82.9
|
1.0
|
N
|
A:LEU475
|
4.8
|
0.0
|
1.0
|
N
|
A:VAL388
|
4.9
|
60.0
|
1.0
|
CA
|
A:GLN500
|
4.9
|
0.0
|
1.0
|
CG
|
A:TYR510
|
4.9
|
0.0
|
1.0
|
C
|
A:PRO359
|
4.9
|
92.7
|
1.0
|
CG2
|
A:VAL433
|
4.9
|
38.3
|
1.0
|
CB
|
A:ALA462
|
5.0
|
0.0
|
1.0
|
N
|
A:VAL439
|
5.0
|
53.0
|
1.0
|
|
Calcium binding site 10 out
of 36 in 1q5b
Go back to
Calcium Binding Sites List in 1q5b
Calcium binding site 10 out
of 36 in the Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca914
b:69.9
occ:1.00
|
CD
|
A:ARG338
|
0.5
|
100.0
|
1.0
|
O
|
A:VAL339
|
0.6
|
87.1
|
1.0
|
CA
|
A:VAL339
|
0.6
|
87.1
|
1.0
|
NE2
|
A:GLN357
|
0.6
|
96.0
|
1.0
|
C
|
A:LEU431
|
0.7
|
0.0
|
1.0
|
O
|
A:LEU431
|
0.8
|
0.0
|
1.0
|
CA
|
A:LEU431
|
0.9
|
0.0
|
1.0
|
CB
|
A:LEU513
|
0.9
|
0.0
|
1.0
|
OD1
|
A:ASP432
|
0.9
|
99.7
|
1.0
|
N
|
A:LEU431
|
0.9
|
0.0
|
1.0
|
C
|
A:VAL339
|
0.9
|
87.1
|
1.0
|
OD1
|
A:ASP463
|
1.0
|
90.9
|
1.0
|
N
|
A:VAL339
|
1.0
|
87.1
|
1.0
|
CG
|
A:PRO438
|
1.0
|
75.9
|
1.0
|
CD
|
A:PRO438
|
1.1
|
75.9
|
1.0
|
CG
|
A:ASP463
|
1.1
|
90.9
|
1.0
|
CA
|
A:ASP432
|
1.1
|
0.0
|
1.0
|
O
|
A:VAL433
|
1.1
|
0.0
|
1.0
|
CG
|
A:ARG338
|
1.2
|
100.0
|
1.0
|
CB
|
A:VAL339
|
1.2
|
49.8
|
1.0
|
CA
|
A:LEU513
|
1.3
|
0.0
|
1.0
|
CG
|
A:ASP432
|
1.4
|
99.7
|
1.0
|
OD2
|
A:ASP515
|
1.4
|
0.0
|
1.0
|
O
|
A:VAL341
|
1.4
|
89.4
|
1.0
|
O
|
A:HIS429
|
1.4
|
0.0
|
1.0
|
NE
|
A:ARG338
|
1.4
|
100.0
|
1.0
|
N
|
A:VAL341
|
1.4
|
89.4
|
1.0
|
N
|
A:SER474
|
1.4
|
99.2
|
1.0
|
CB
|
A:ARG338
|
1.5
|
100.0
|
1.0
|
N
|
A:ASP432
|
1.5
|
0.0
|
1.0
|
CD
|
A:GLN357
|
1.5
|
96.0
|
1.0
|
N
|
A:VAL433
|
1.6
|
0.0
|
1.0
|
CD2
|
A:LEU513
|
1.6
|
0.0
|
1.0
|
CZ
|
A:ARG338
|
1.6
|
100.0
|
1.0
|
OD1
|
A:ASN434
|
1.7
|
68.5
|
1.0
|
NH1
|
A:ARG338
|
1.7
|
100.0
|
1.0
|
OD2
|
A:ASP463
|
1.7
|
90.9
|
1.0
|
CB
|
A:LEU431
|
1.7
|
65.8
|
1.0
|
CG2
|
A:VAL339
|
1.8
|
49.8
|
1.0
|
CG1
|
A:VAL473
|
1.8
|
100.0
|
1.0
|
CA
|
A:VAL473
|
1.9
|
0.0
|
1.0
|
C
|
A:VAL473
|
1.9
|
0.0
|
1.0
|
CB
|
A:ASP463
|
1.9
|
90.9
|
1.0
|
N
|
A:SER514
|
1.9
|
49.0
|
1.0
|
C
|
A:ASP432
|
1.9
|
0.0
|
1.0
|
O
|
A:TRP483
|
1.9
|
99.9
|
1.0
|
CG
|
A:LEU513
|
1.9
|
0.0
|
1.0
|
OD2
|
A:ASP432
|
1.9
|
99.7
|
1.0
|
C
|
A:VAL430
|
2.0
|
0.0
|
1.0
|
CB
|
A:ASP432
|
2.0
|
99.7
|
1.0
|
C
|
A:LEU513
|
2.0
|
0.0
|
1.0
|
CD1
|
A:LEU475
|
2.1
|
54.0
|
1.0
|
O
|
A:LEU512
|
2.1
|
39.9
|
1.0
|
C
|
A:ARG338
|
2.1
|
0.0
|
1.0
|
N
|
A:ASP340
|
2.1
|
57.6
|
1.0
|
C
|
A:VAL433
|
2.2
|
0.0
|
1.0
|
OD2
|
A:ASP461
|
2.2
|
0.0
|
1.0
|
OD1
|
A:ASP461
|
2.2
|
0.0
|
1.0
|
CG2
|
A:VAL333
|
2.2
|
68.3
|
1.0
|
OE1
|
A:GLN357
|
2.2
|
96.0
|
1.0
|
CG2
|
A:THR499
|
2.2
|
85.4
|
1.0
|
CD
|
A:LYS361
|
2.3
|
99.8
|
1.0
|
C
|
A:ASP340
|
2.3
|
57.6
|
1.0
|
CG
|
A:GLN357
|
2.3
|
96.0
|
1.0
|
C
|
A:VAL341
|
2.3
|
89.4
|
1.0
|
CB
|
A:PRO438
|
2.3
|
75.9
|
1.0
|
CG
|
A:ASP515
|
2.3
|
0.0
|
1.0
|
CA
|
A:ASN434
|
2.4
|
0.0
|
1.0
|
CA
|
A:VAL341
|
2.4
|
89.4
|
1.0
|
CB
|
A:VAL473
|
2.4
|
100.0
|
1.0
|
CG1
|
A:VAL339
|
2.4
|
49.8
|
1.0
|
CG
|
A:LEU475
|
2.4
|
54.0
|
1.0
|
CA
|
A:CA916
|
2.4
|
85.4
|
1.0
|
CG
|
A:ASN434
|
2.4
|
68.5
|
1.0
|
N
|
A:LEU513
|
2.4
|
0.0
|
1.0
|
NH2
|
A:ARG338
|
2.5
|
100.0
|
1.0
|
CA
|
A:ASP340
|
2.5
|
57.6
|
1.0
|
N
|
A:PRO438
|
2.5
|
75.9
|
1.0
|
CG2
|
A:ILE352
|
2.5
|
72.5
|
1.0
|
CA
|
A:SER474
|
2.6
|
99.2
|
1.0
|
CA
|
A:VAL430
|
2.6
|
0.0
|
1.0
|
CA
|
A:ARG338
|
2.6
|
0.0
|
1.0
|
CB
|
A:ALA485
|
2.6
|
95.4
|
1.0
|
C
|
A:HIS429
|
2.6
|
0.0
|
1.0
|
O
|
A:ASN436
|
2.7
|
56.8
|
1.0
|
O
|
A:LYS472
|
2.7
|
0.0
|
1.0
|
CG2
|
A:VAL355
|
2.7
|
82.9
|
1.0
|
CG1
|
A:VAL341
|
2.7
|
31.7
|
1.0
|
CG
|
A:LEU431
|
2.7
|
65.8
|
1.0
|
OD1
|
A:ASP480
|
2.7
|
0.0
|
1.0
|
CA
|
A:VAL433
|
2.7
|
0.0
|
1.0
|
CG
|
A:ASP461
|
2.7
|
0.0
|
1.0
|
C
|
A:LEU512
|
2.7
|
39.9
|
1.0
|
OG1
|
A:THR499
|
2.8
|
85.4
|
1.0
|
O
|
A:VAL430
|
2.8
|
0.0
|
1.0
|
CA
|
A:SER514
|
2.9
|
49.0
|
1.0
|
C
|
A:SER474
|
2.9
|
99.2
|
1.0
|
CB
|
A:ASP515
|
2.9
|
0.0
|
1.0
|
N
|
A:ASN434
|
2.9
|
0.0
|
1.0
|
CA
|
A:GLY437
|
2.9
|
93.1
|
1.0
|
C
|
A:SER514
|
3.0
|
49.0
|
1.0
|
C
|
A:TRP483
|
3.0
|
99.9
|
1.0
|
O
|
A:ARG338
|
3.0
|
0.0
|
1.0
|
NE
|
A:ARG396
|
3.0
|
100.0
|
1.0
|
CB
|
A:VAL341
|
3.0
|
31.7
|
1.0
|
O
|
A:VAL473
|
3.0
|
0.0
|
1.0
|
CD
|
A:ARG396
|
3.0
|
100.0
|
1.0
|
CE
|
A:LYS361
|
3.0
|
99.8
|
1.0
|
O
|
A:ASN467
|
3.0
|
44.5
|
1.0
|
CA
|
A:LYS484
|
3.0
|
99.9
|
1.0
|
CD1
|
A:LEU513
|
3.1
|
0.0
|
1.0
|
ND2
|
A:ASN434
|
3.1
|
68.5
|
1.0
|
CB
|
A:ASN434
|
3.1
|
68.5
|
1.0
|
O
|
A:ASP432
|
3.1
|
0.0
|
1.0
|
OE2
|
A:GLU397
|
3.1
|
75.5
|
1.0
|
O
|
A:SER474
|
3.1
|
99.2
|
1.0
|
O
|
A:SER514
|
3.1
|
49.0
|
1.0
|
N
|
A:VAL473
|
3.1
|
0.0
|
1.0
|
CG2
|
A:VAL433
|
3.1
|
38.3
|
1.0
|
N
|
A:ASP435
|
3.2
|
99.6
|
1.0
|
OD1
|
A:ASP515
|
3.2
|
0.0
|
1.0
|
CB
|
A:THR499
|
3.2
|
85.4
|
1.0
|
C
|
A:ASN434
|
3.2
|
0.0
|
1.0
|
O
|
A:LEU513
|
3.2
|
0.0
|
1.0
|
CG1
|
A:VAL336
|
3.2
|
47.5
|
1.0
|
N
|
A:VAL430
|
3.2
|
0.0
|
1.0
|
CG
|
A:LYS361
|
3.2
|
99.8
|
1.0
|
N
|
A:LEU475
|
3.2
|
0.0
|
1.0
|
CA
|
A:ASP463
|
3.2
|
0.0
|
1.0
|
CA
|
A:PRO438
|
3.2
|
75.9
|
1.0
|
CB
|
A:LEU475
|
3.3
|
54.0
|
1.0
|
C
|
A:GLY437
|
3.3
|
93.1
|
1.0
|
N
|
A:ALA485
|
3.3
|
95.4
|
1.0
|
N
|
A:ASP515
|
3.3
|
99.8
|
1.0
|
N
|
A:SER342
|
3.3
|
72.5
|
1.0
|
C
|
A:LYS472
|
3.4
|
0.0
|
1.0
|
O
|
A:SER479
|
3.4
|
82.9
|
1.0
|
CA
|
A:SER342
|
3.4
|
72.5
|
1.0
|
N
|
A:LYS484
|
3.4
|
99.9
|
1.0
|
CG1
|
A:VAL333
|
3.4
|
68.3
|
1.0
|
O
|
A:ASP340
|
3.4
|
57.6
|
1.0
|
CD1
|
A:LEU431
|
3.4
|
65.8
|
1.0
|
CB
|
A:LYS484
|
3.5
|
100.0
|
1.0
|
CB
|
A:VAL333
|
3.5
|
68.3
|
1.0
|
O
|
A:VAL355
|
3.5
|
83.7
|
1.0
|
CD2
|
A:TYR471
|
3.5
|
0.0
|
1.0
|
CG2
|
A:VAL473
|
3.5
|
100.0
|
1.0
|
OD1
|
A:ASN467
|
3.5
|
73.4
|
1.0
|
CE2
|
A:TYR471
|
3.5
|
0.0
|
1.0
|
N
|
A:HIS429
|
3.6
|
0.0
|
1.0
|
CB
|
A:ASN467
|
3.6
|
73.4
|
1.0
|
CB
|
A:VAL433
|
3.6
|
38.3
|
1.0
|
CD2
|
A:LEU475
|
3.6
|
54.0
|
1.0
|
C
|
A:ASN436
|
3.6
|
56.8
|
1.0
|
N
|
A:ARG338
|
3.6
|
0.0
|
1.0
|
CA
|
A:HIS429
|
3.7
|
0.0
|
1.0
|
CG1
|
A:VAL430
|
3.7
|
99.6
|
1.0
|
CB
|
A:ARG396
|
3.7
|
100.0
|
1.0
|
CB
|
A:GLN357
|
3.7
|
96.0
|
1.0
|
CA
|
A:ALA485
|
3.8
|
95.4
|
1.0
|
CG
|
A:ASP480
|
3.8
|
0.0
|
1.0
|
CD2
|
A:LEU431
|
3.8
|
65.8
|
1.0
|
CB
|
A:VAL430
|
3.8
|
99.6
|
1.0
|
NE2
|
A:GLN500
|
3.8
|
100.0
|
1.0
|
NZ
|
A:LYS361
|
3.8
|
99.8
|
1.0
|
OD2
|
A:ASP435
|
3.9
|
64.9
|
1.0
|
CB
|
A:SER474
|
3.9
|
77.0
|
1.0
|
CA
|
A:ASP515
|
3.9
|
99.8
|
1.0
|
CB
|
A:LYS361
|
3.9
|
99.8
|
1.0
|
CB
|
A:ILE352
|
3.9
|
72.5
|
1.0
|
N
|
A:GLY437
|
3.9
|
93.1
|
1.0
|
CG
|
A:LYS484
|
3.9
|
100.0
|
1.0
|
CB
|
A:HIS429
|
3.9
|
69.8
|
1.0
|
CB
|
A:VAL355
|
3.9
|
82.9
|
1.0
|
N
|
A:GLU343
|
3.9
|
0.0
|
1.0
|
N
|
A:ASP463
|
4.0
|
0.0
|
1.0
|
C
|
A:LYS484
|
4.0
|
99.9
|
1.0
|
CG
|
A:ARG396
|
4.0
|
100.0
|
1.0
|
CA
|
A:LEU475
|
4.0
|
0.0
|
1.0
|
CG
|
A:ASN467
|
4.0
|
73.4
|
1.0
|
CD
|
A:PRO334
|
4.0
|
53.3
|
1.0
|
N
|
A:ILE464
|
4.0
|
88.0
|
1.0
|
CB
|
A:ASP340
|
4.0
|
82.5
|
1.0
|
C
|
A:SER342
|
4.1
|
72.5
|
1.0
|
CD
|
A:GLU397
|
4.1
|
75.5
|
1.0
|
CA
|
A:LEU512
|
4.1
|
39.9
|
1.0
|
N
|
A:VAL355
|
4.1
|
83.7
|
1.0
|
CG2
|
A:ILE464
|
4.1
|
100.0
|
1.0
|
OD2
|
A:ASP480
|
4.1
|
0.0
|
1.0
|
N
|
A:TRP483
|
4.1
|
99.9
|
1.0
|
CZ
|
A:ARG396
|
4.1
|
100.0
|
1.0
|
NH2
|
A:ARG396
|
4.1
|
100.0
|
1.0
|
C
|
A:VAL355
|
4.1
|
83.7
|
1.0
|
C
|
A:ASN467
|
4.1
|
44.5
|
1.0
|
N
|
A:LEU512
|
4.1
|
39.9
|
1.0
|
CB
|
A:LEU428
|
4.1
|
63.9
|
1.0
|
CB
|
A:ASP461
|
4.2
|
0.0
|
1.0
|
C
|
A:LEU428
|
4.2
|
0.0
|
1.0
|
C
|
A:ASP463
|
4.2
|
0.0
|
1.0
|
O
|
A:THR499
|
4.2
|
0.0
|
1.0
|
CB
|
A:SER514
|
4.2
|
0.0
|
1.0
|
O
|
A:ASN434
|
4.2
|
0.0
|
1.0
|
OG
|
A:SER474
|
4.2
|
77.0
|
1.0
|
CB
|
A:VAL336
|
4.3
|
47.5
|
1.0
|
CA
|
A:TRP483
|
4.3
|
99.9
|
1.0
|
OG1
|
A:THR482
|
4.3
|
0.0
|
1.0
|
CA
|
A:LEU428
|
4.3
|
0.0
|
1.0
|
OE1
|
A:GLU397
|
4.3
|
75.5
|
1.0
|
OE1
|
A:GLU343
|
4.3
|
72.9
|
1.0
|
CA
|
A:VAL355
|
4.4
|
83.7
|
1.0
|
CB
|
A:LEU354
|
4.4
|
26.1
|
1.0
|
CB
|
A:SER342
|
4.4
|
49.2
|
1.0
|
CG2
|
A:VAL341
|
4.4
|
31.7
|
1.0
|
O
|
A:PRO520
|
4.4
|
95.2
|
1.0
|
C
|
A:PRO438
|
4.4
|
75.9
|
1.0
|
CD
|
A:LYS484
|
4.4
|
100.0
|
1.0
|
ND1
|
A:HIS429
|
4.4
|
69.8
|
1.0
|
CA
|
A:LEU354
|
4.4
|
62.9
|
1.0
|
OG
|
A:SER514
|
4.5
|
0.0
|
1.0
|
O
|
A:GLY437
|
4.5
|
93.1
|
1.0
|
O
|
A:GLN517
|
4.5
|
0.0
|
1.0
|
C
|
A:SER479
|
4.5
|
82.9
|
1.0
|
OD1
|
A:ASP340
|
4.5
|
82.5
|
1.0
|
N
|
A:ASN436
|
4.5
|
56.8
|
1.0
|
CA
|
A:ASP435
|
4.5
|
99.6
|
1.0
|
CG2
|
A:VAL336
|
4.5
|
47.5
|
1.0
|
C
|
A:ASP435
|
4.5
|
99.6
|
1.0
|
CB
|
A:GLU343
|
4.5
|
72.9
|
1.0
|
O
|
A:SER353
|
4.5
|
79.6
|
1.0
|
CA
|
A:ASN467
|
4.6
|
44.5
|
1.0
|
CA
|
A:THR499
|
4.6
|
0.0
|
1.0
|
CG2
|
A:THR482
|
4.6
|
0.0
|
1.0
|
O
|
A:PRO438
|
4.6
|
75.9
|
1.0
|
CD
|
A:GLN500
|
4.7
|
100.0
|
1.0
|
N
|
A:VAL333
|
4.7
|
82.6
|
1.0
|
CG
|
A:TYR471
|
4.7
|
0.0
|
1.0
|
N
|
A:LYS472
|
4.7
|
0.0
|
1.0
|
O
|
A:ILE464
|
4.7
|
88.0
|
1.0
|
CG1
|
A:VAL511
|
4.7
|
48.3
|
1.0
|
CG2
|
A:ILE351
|
4.7
|
27.4
|
1.0
|
CG2
|
A:THR468
|
4.7
|
0.0
|
1.0
|
CE
|
A:MET494
|
4.7
|
85.0
|
1.0
|
CA
|
A:VAL333
|
4.7
|
82.6
|
1.0
|
N
|
A:PRO520
|
4.7
|
95.2
|
1.0
|
CA
|
A:ASN436
|
4.7
|
56.8
|
1.0
|
CZ
|
A:TYR471
|
4.7
|
0.0
|
1.0
|
CA
|
A:ILE352
|
4.7
|
76.5
|
1.0
|
CG
|
A:HIS429
|
4.8
|
69.8
|
1.0
|
CG
|
A:PRO334
|
4.8
|
53.3
|
1.0
|
C
|
A:THR499
|
4.8
|
0.0
|
1.0
|
CA
|
A:LYS472
|
4.8
|
0.0
|
1.0
|
CA
|
A:GLN357
|
4.8
|
67.7
|
1.0
|
O
|
A:ASP435
|
4.8
|
99.6
|
1.0
|
CG
|
A:ASP435
|
4.8
|
64.9
|
1.0
|
CA
|
A:THR482
|
4.8
|
0.0
|
1.0
|
CG
|
A:ASP340
|
4.8
|
82.5
|
1.0
|
C
|
A:SER337
|
4.8
|
0.0
|
1.0
|
O
|
A:LEU428
|
4.8
|
0.0
|
1.0
|
CB
|
A:TYR471
|
4.9
|
0.0
|
1.0
|
CG2
|
A:VAL430
|
4.9
|
99.6
|
1.0
|
CG
|
A:LEU428
|
4.9
|
63.9
|
1.0
|
O
|
A:ILE351
|
4.9
|
42.0
|
1.0
|
CD1
|
A:ILE352
|
4.9
|
72.5
|
1.0
|
O
|
A:SER342
|
4.9
|
72.5
|
1.0
|
OH
|
A:TYR471
|
4.9
|
0.0
|
1.0
|
CG1
|
A:ILE352
|
4.9
|
72.5
|
1.0
|
CB
|
A:ASN518
|
4.9
|
88.3
|
1.0
|
N
|
A:ALA356
|
4.9
|
52.5
|
1.0
|
CA
|
A:GLU343
|
4.9
|
0.0
|
1.0
|
CG1
|
A:VAL433
|
4.9
|
38.3
|
1.0
|
CB
|
A:TRP483
|
5.0
|
0.0
|
1.0
|
C
|
A:LEU354
|
5.0
|
62.9
|
1.0
|
O
|
A:ALA356
|
5.0
|
52.5
|
1.0
|
CB
|
A:LEU512
|
5.0
|
36.9
|
1.0
|
C
|
A:ALA356
|
5.0
|
52.5
|
1.0
|
CB
|
A:THR482
|
5.0
|
0.0
|
1.0
|
|
Reference:
W.He,
P.Cowin,
D.L.Stokes.
Untangling Desmosomal Knots with Electron Tomography Science V. 302 109 2003.
ISSN: ISSN 0036-8075
PubMed: 14526082
DOI: 10.1126/SCIENCE.1086957
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