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Calcium in PDB 1q5c: S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Calcium atom in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography (pdb code 1q5c). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 48 binding sites of Calcium where determined in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography, PDB code: 1q5c:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 1 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca905

b:22.4
occ:1.00
 O A:ILE99 0.2 22.6 1.0
C A:VAL191 0.3 36.5 1.0
C A:THR190 0.5 35.6 1.0
CG2 A:ILE7 0.6 23.8 1.0
CB A:PRO155 0.6 51.0 1.0
N A:THR190 0.7 35.6 1.0
N A:VAL191 0.8 36.5 1.0
O A:VAL9 0.8 14.4 1.0
N A:VAL9 0.9 14.4 1.0
N A:GLN101 0.9 43.4 1.0
C A:ASP100 1.0 42.9 1.0
O A:GLN23 1.0 24.3 1.0
O A:VAL191 1.0 36.5 1.0
C A:ILE99 1.0 22.6 1.0
CG2 A:VAL22 1.1 37.4 1.0
CA A:GLN192 1.1 41.4 1.0
CA A:VAL191 1.1 36.5 1.0
CB A:VAL22 1.2 37.4 1.0
N A:ASP154 1.2 55.9 1.0
OD1 A:ASP100 1.2 34.3 1.0
CD1 A:PHE184 1.2 49.3 1.0
CA A:THR190 1.2 35.6 1.0
CE A:LYS25 1.3 100.0 1.0
CD A:LYS25 1.3 100.0 1.0
O A:ASP154 1.3 55.9 1.0
CB D:TRP2 1.3 19.9 1.0
CA A:ASP100 1.3 42.9 1.0
CA A:LEU189 1.3 33.2 1.0
OD2 A:ASP134 1.3 51.6 1.0
CA A:VAL9 1.3 14.4 1.0
O A:THR190 1.3 35.6 1.0
OD2 A:ASP136 1.4 42.7 1.0
N A:GLN192 1.4 41.4 1.0
N A:ALA193 1.4 35.2 1.0
CG A:PRO106 1.4 47.0 1.0
O A:ALA193 1.5 35.2 1.0
C A:LYS8 1.5 13.9 1.0
CG1 A:VAL22 1.5 37.4 1.0
C A:VAL9 1.5 14.4 1.0
C8 A:NAG801 1.5 39.8 0.5
C A:LEU189 1.5 33.2 1.0
CE1 A:PHE184 1.5 49.3 1.0
CB A:LYS25 1.6 100.0 1.0
CD A:PRO106 1.6 47.0 1.0
CG A:ASP136 1.7 42.7 1.0
N A:ILE99 1.7 22.6 1.0
O A:LYS8 1.7 13.9 1.0
C A:ASP154 1.7 55.9 1.0
O A:LYS152 1.7 49.0 1.0
CA A:PRO155 1.7 51.0 1.0
N A:ASP100 1.8 42.9 1.0
CG A:LYS25 1.8 100.0 1.0
CG D:TRP2 1.8 19.9 1.0
C A:GLN153 1.8 52.8 1.0
O A:GLN101 1.8 43.4 1.0
C A:GLN192 1.8 41.4 1.0
CA A:ILE99 1.8 22.6 1.0
O A:THR188 1.9 41.5 1.0
CA A:GLN153 1.9 52.8 1.0
CG A:ASP100 1.9 34.3 1.0
CE3 D:TRP2 1.9 19.9 1.0
CB A:ILE7 1.9 23.8 1.0
C A:GLN23 1.9 24.3 1.0
OD2 A:ASP195 1.9 34.4 1.0
CD1 A:ILE7 2.0 23.8 1.0
CA D:TRP2 2.0 36.4 1.0
CB A:ASP136 2.0 42.7 1.0
CB A:LEU189 2.1 21.9 1.0
CG A:PRO155 2.1 51.0 1.0
CG2 A:VAL9 2.1 6.1 1.0
C A:GLN101 2.1 43.4 1.0
CB A:VAL9 2.1 6.1 1.0
CA A:ASP154 2.1 55.9 1.0
O A:VAL203 2.1 81.9 1.0
O A:ASN104 2.2 47.5 1.0
O A:ASP100 2.2 42.9 1.0
OD1 D:ASN27 2.2 68.0 1.0
CD2 D:TRP2 2.2 19.9 1.0
C A:ALA193 2.2 35.2 1.0
N A:PRO155 2.2 51.0 1.0
CA A:ALA193 2.3 35.2 1.0
CA A:GLN101 2.3 43.4 1.0
CB A:ILE99 2.3 36.3 1.0
CA A:CA906 2.3 5.0 1.0
O A:ASN143 2.3 41.2 1.0
CB A:PRO106 2.3 47.0 1.0
CB A:ASP100 2.4 34.3 1.0
N A:LYS25 2.4 38.0 1.0
CB A:GLN192 2.4 63.1 1.0
OD1 A:ASN102 2.4 55.7 1.0
N A:LEU189 2.4 33.2 1.0
CA A:ILE24 2.4 31.4 1.0
OD1 A:ASP136 2.4 42.7 1.0
CG A:ASP195 2.4 34.4 1.0
C A:THR188 2.4 41.5 1.0
CG1 A:ILE7 2.4 23.8 1.0
C A:PRO155 2.5 51.0 1.0
CD D:ARG30 2.5 100.0 1.0
CG A:ASP134 2.5 51.6 1.0
CA A:LYS8 2.5 13.9 1.0
CB A:THR190 2.5 32.9 1.0
CB A:ALA193 2.5 35.2 1.0
NZ A:LYS25 2.5 100.0 1.0
CG A:PHE184 2.5 49.3 1.0
CA A:LYS25 2.5 38.0 1.0
O A:PRO155 2.5 51.0 1.0
O A:LEU189 2.5 33.2 1.0
C A:ILE7 2.6 16.4 1.0
OD1 A:ASP195 2.6 34.4 1.0
CB A:VAL191 2.6 31.2 1.0
CZ A:PHE184 2.6 49.3 1.0
O A:ILE7 2.6 16.4 1.0
C D:TRP2 2.6 36.4 1.0
N A:ILE24 2.6 31.4 1.0
C A:LYS152 2.7 49.0 1.0
CA A:VAL22 2.7 42.2 1.0
CG2 A:VAL203 2.7 25.2 1.0
OD1 A:ASP134 2.7 51.6 1.0
OD2 A:ASP100 2.7 34.3 1.0
N A:SER10 2.7 38.6 1.0
CD1 D:TRP2 2.7 19.9 1.0
C A:VAL98 2.8 12.8 1.0
CD A:PRO155 2.8 51.0 1.0
N A:LYS8 2.8 13.9 1.0
CG1 A:ILE99 2.8 36.3 1.0
CB A:GLN153 2.8 44.9 1.0
N A:GLN153 2.8 52.8 1.0
N A:PRO106 2.8 47.0 1.0
CA A:ASN102 2.8 33.5 1.0
O A:ASN97 2.8 36.3 1.0
N A:GLN23 2.8 24.3 1.0
NE D:ARG30 2.8 100.0 1.0
N A:ASN102 2.9 33.5 1.0
OE1 A:GLU11 2.9 21.0 1.0
C A:ILE24 2.9 31.4 1.0
C7 A:NAG801 2.9 39.8 0.5
O A:GLN153 2.9 52.8 1.0
N A:VAL203 2.9 81.9 1.0
CA A:SER10 2.9 38.6 1.0
CA A:ILE7 2.9 16.4 1.0
CD A:ARG30 2.9 100.0 1.0
CD2 A:TYR187 3.0 32.2 1.0
CG2 A:VAL191 3.0 31.2 1.0
CG A:GLN192 3.0 63.1 1.0
O D:TRP2 3.0 36.4 1.0
CB A:ASN143 3.0 34.4 1.0
CB A:ASP154 3.0 82.0 1.0
CZ A:PHE108 3.1 35.6 1.0
CA A:GLN23 3.1 24.3 1.0
C A:VAL203 3.1 81.9 1.0
ND2 A:ASN143 3.1 34.4 1.0
O A:GLN192 3.1 41.4 1.0
N D:VAL3 3.2 65.7 1.0
C A:VAL22 3.2 42.2 1.0
OD2 A:ASP29 3.2 42.9 1.0
CZ3 D:TRP2 3.2 19.9 1.0
OE1 B:GLU90 3.2 89.9 1.0
CG2 A:THR190 3.2 32.9 1.0
CG D:ASN27 3.2 68.0 1.0
C A:LYS25 3.2 38.0 1.0
N A:THR194 3.3 40.9 1.0
CG A:ARG30 3.3 100.0 1.0
CG1 A:VAL191 3.3 31.2 1.0
CB A:PHE184 3.3 49.3 1.0
CA A:VAL98 3.3 12.8 1.0
CA A:PRO106 3.3 47.0 1.0
O A:LYS183 3.3 45.1 1.0
O A:LEU201 3.3 47.6 1.0
C A:ASN143 3.3 41.2 1.0
CB A:GLN101 3.3 71.4 1.0
N A:VAL22 3.3 42.2 1.0
OG1 A:THR190 3.3 32.9 1.0
CE1 A:PHE108 3.3 35.6 1.0
N A:THR188 3.4 41.5 1.0
CD1 A:ILE99 3.4 36.3 1.0
N A:GLU11 3.4 30.1 1.0
CE2 A:PHE184 3.4 49.3 1.0
CG2 A:ILE24 3.4 13.3 1.0
C A:ASN104 3.4 47.5 1.0
N D:TRP2 3.4 36.4 1.0
O A:LYS25 3.4 38.0 1.0
CE2 A:TYR187 3.4 32.2 1.0
CD2 A:PHE184 3.4 49.3 1.0
C A:SER10 3.4 38.6 1.0
O A:GLU157 3.4 70.7 1.0
CG2 A:ILE99 3.5 36.3 1.0
O7 A:NAG801 3.5 39.8 0.5
CG A:ASN102 3.5 55.7 1.0
CG1 A:VAL9 3.5 6.1 1.0
CG A:LEU189 3.5 21.9 1.0
O A:VAL98 3.5 12.8 1.0
N2 A:NAG801 3.5 39.8 0.5
CA A:VAL203 3.5 81.9 1.0
C A:LEU21 3.5 22.2 1.0
CA A:THR194 3.5 40.9 1.0
CE2 D:TRP2 3.6 19.9 1.0
CA A:ASP136 3.6 14.1 1.0
O A:LEU21 3.6 22.2 1.0
CB A:GLU11 3.6 21.0 1.0
N A:ASP103 3.6 73.5 1.0
CB A:ASP195 3.6 34.4 1.0
N A:GLU156 3.6 24.3 1.0
CB A:ASP134 3.6 51.6 1.0
CA A:SER202 3.6 45.8 1.0
CB A:ILE24 3.7 13.3 1.0
C A:ASN102 3.7 33.5 1.0
CB A:VAL203 3.7 25.2 1.0
CA A:ASN27 3.7 44.8 1.0
CB D:ASN27 3.7 68.0 1.0
CG A:LYS183 3.7 56.8 1.0
C A:ARG105 3.7 90.2 1.0
CD1 A:LEU151 3.7 36.1 1.0
O A:SER26 3.7 46.0 1.0
CB A:LYS8 3.7 44.7 1.0
CB A:LEU21 3.7 11.9 1.0
NE1 D:TRP2 3.7 19.9 1.0
CA A:ASN143 3.7 41.2 1.0
CA A:THR188 3.7 41.5 1.0
C A:SER202 3.7 45.8 1.0
CZ D:ARG30 3.7 100.0 1.0
CB A:ARG30 3.7 100.0 1.0
CG A:ASN143 3.7 34.4 1.0
N A:ASP195 3.7 29.1 1.0
O A:ILE24 3.7 31.4 1.0
CD2 A:LEU21 3.7 11.9 1.0
O D:VAL3 3.8 65.7 1.0
CD1 A:LEU146 3.8 22.8 1.0
N A:ASN104 3.8 47.5 1.0
CA A:GLU204 3.8 13.2 1.0
CB A:ASN102 3.8 55.7 1.0
CG D:ARG30 3.8 100.0 1.0
NH1 D:ARG30 3.8 100.0 1.0
CD B:GLU90 3.8 89.9 1.0
CG1 A:VAL98 3.8 58.2 1.0
CG A:GLN153 3.8 44.9 1.0
CD A:ARG68 3.9 39.4 1.0
CA A:ARG105 3.9 90.2 1.0
CD A:GLU11 3.9 21.0 1.0
CG A:TYR187 3.9 32.2 1.0
O A:ASN27 3.9 44.8 1.0
CA A:ASP195 3.9 29.1 1.0
C A:ASN97 3.9 36.3 1.0
C A:LYS183 3.9 45.1 1.0
CD A:LYS183 3.9 56.8 1.0
CB A:TYR187 3.9 32.2 1.0
CD2 A:LEU189 3.9 21.9 1.0
N A:GLY205 3.9 76.1 1.0
CB A:LYS183 3.9 56.8 1.0
CB A:ASN27 3.9 68.0 1.0
O A:SER149 3.9 54.8 1.0
CA A:LYS152 3.9 49.0 1.0
OD2 A:ASP103 3.9 33.9 1.0
N A:GLU204 4.0 13.2 1.0
OD1 A:ASP29 4.0 42.9 1.0
CG2 A:ILE150 4.0 24.3 1.0
C A:THR194 4.0 40.9 1.0
O A:VAL22 4.0 42.2 1.0
CG2 A:ILE96 4.0 10.2 1.0
N A:LYS152 4.0 49.0 1.0
CB A:GLN23 4.0 54.0 1.0
CA A:TYR187 4.0 35.4 1.0
CG A:ASP29 4.0 42.9 1.0
CG1 A:VAL203 4.1 25.2 1.0
CA A:ASN104 4.1 47.5 1.0
O A:SER10 4.1 38.6 1.0
CB A:ASN104 4.1 79.0 1.0
CA A:PHE184 4.1 62.0 1.0
C A:LEU201 4.1 47.6 1.0
CG A:LEU21 4.1 11.9 1.0
CG A:GLN23 4.2 54.0 1.0
CG A:GLN101 4.2 71.4 1.0
N A:VAL98 4.2 12.8 1.0
CG2 D:VAL3 4.2 72.0 1.0
CA D:VAL3 4.2 65.7 1.0
CA A:LEU21 4.2 22.2 1.0
CB A:VAL98 4.2 58.2 1.0
N A:SER26 4.2 46.0 1.0
N A:ASP136 4.2 14.1 1.0
CE2 A:PHE108 4.2 35.6 1.0
N A:LEU151 4.2 33.5 1.0
CA A:GLU11 4.2 30.1 1.0
OD1 B:ASN27 4.2 68.0 1.0
C A:SER26 4.3 46.0 1.0
N A:ARG105 4.3 90.2 1.0
CG B:GLU90 4.3 89.9 1.0
CZ A:TYR187 4.3 32.2 1.0
OG A:SER10 4.3 46.9 1.0
ND2 D:ASN27 4.3 68.0 1.0
OE2 A:GLU69 4.3 15.8 1.0
CB A:SER10 4.3 46.9 1.0
C D:VAL3 4.3 65.7 1.0
N A:ILE7 4.3 16.4 1.0
C A:TYR187 4.3 35.4 1.0
CE A:LYS183 4.3 56.8 1.0
C A:GLU204 4.3 13.2 1.0
NE A:ARG30 4.3 100.0 1.0
CB A:GLU157 4.3 79.2 1.0
CG A:ASP154 4.3 82.0 1.0
N A:GLU157 4.3 70.7 1.0
N A:ASN27 4.3 44.8 1.0
C A:ASN27 4.3 44.8 1.0
CG A:ARG68 4.3 39.4 1.0
CH2 D:TRP2 4.4 19.9 1.0
O D:ASP1 4.4 19.4 1.0
N A:ASP137 4.4 49.5 1.0
OE2 B:GLU90 4.4 89.9 1.0
CA A:ARG30 4.4 42.3 1.0
CB D:ARG30 4.4 100.0 1.0
ND2 A:ASN102 4.4 55.7 1.0
O A:GLY205 4.4 76.1 1.0
C A:GLU157 4.4 70.7 1.0
CA A:LYS183 4.4 45.1 1.0
N A:PHE184 4.4 62.0 1.0
C D:ASP1 4.4 19.4 1.0
C A:PRO106 4.4 47.0 1.0
CB A:SER202 4.4 40.3 1.0
CD A:LYS8 4.4 44.7 1.0
N A:SER202 4.4 45.8 1.0
C A:ASP136 4.5 14.1 1.0
N A:GLY144 4.5 31.3 1.0
CG A:GLU11 4.5 21.0 1.0
OD2 D:ASP1 4.5 0.0 1.0
CG A:ASP103 4.5 33.9 1.0
CA A:ILE150 4.5 23.1 1.0
CD1 A:LEU189 4.5 21.9 1.0
CD A:GLN192 4.5 63.1 1.0
CB A:LYS152 4.5 53.2 1.0
CB A:GLU204 4.5 97.6 1.0
CZ2 D:TRP2 4.6 19.9 1.0
CB A:THR188 4.6 76.5 1.0
NE A:ARG68 4.6 39.4 1.0
OD1 A:ASP103 4.6 33.9 1.0
CD1 A:ILE4 4.6 13.2 1.0
OD1 A:ASP154 4.6 82.0 1.0
OG1 A:THR194 4.6 21.8 1.0
O A:ARG105 4.6 90.2 1.0
O D:ASN27 4.7 44.8 1.0
O A:THR194 4.7 40.9 1.0
CG A:LEU146 4.7 22.8 1.0
NH2 D:ARG30 4.7 100.0 1.0
OH A:TYR187 4.7 32.2 1.0
CB B:GLU90 4.7 89.9 1.0
CG A:LEU151 4.7 36.1 1.0
O A:ASN102 4.7 33.5 1.0
OE2 A:GLU11 4.7 21.0 1.0
CD1 A:PHE108 4.7 35.6 1.0
CA A:GLY144 4.7 31.3 1.0
CA A:ASP134 4.7 47.4 1.0
N A:ARG30 4.7 42.3 1.0
C A:GLY205 4.7 76.1 1.0
CA A:GLU157 4.8 70.7 1.0
CB A:LEU201 4.8 44.2 1.0
CB A:THR194 4.8 21.8 1.0
O A:SER202 4.8 45.8 1.0
CD A:GLN153 4.8 44.9 1.0
CA A:GLU156 4.8 24.3 1.0
CG A:LYS8 4.8 44.7 1.0
NE2 A:GLN153 4.8 44.9 1.0
CA A:ASP103 4.8 73.5 1.0
CG1 A:ILE24 4.8 13.3 1.0
CB A:ARG68 4.8 39.4 1.0
C A:ASP103 4.9 73.5 1.0
CA A:GLY205 4.9 76.1 1.0
N A:ASN97 4.9 36.3 1.0
OD1 A:ASN143 4.9 34.4 1.0
O A:PRO106 4.9 47.0 1.0
OE1 B:GLU89 4.9 33.1 1.0
CG A:GLU204 4.9 97.6 1.0
CA A:LEU201 4.9 47.6 1.0
C A:SER149 5.0 54.8 1.0
C A:ILE150 5.0 23.1 1.0
CD1 A:TYR187 5.0 32.2 1.0
CG A:ARG105 5.0 71.2 1.0
C2 A:NAG801 5.0 39.8 0.5
CG D:ASP1 5.0 0.0 1.0

Calcium binding site 2 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 2 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca906

b:5.0
occ:1.00
 CA A:ILE24 0.2 31.4 1.0
OD1 A:ASP136 0.4 42.7 1.0
CA A:LYS25 0.5 38.0 1.0
N A:PRO106 0.5 47.0 1.0
CG2 A:VAL203 0.6 25.2 1.0
O A:THR188 0.7 41.5 1.0
C A:ILE24 0.7 31.4 1.0
N A:LYS25 0.8 38.0 1.0
C7 A:NAG801 0.8 39.8 0.5
CE3 D:TRP2 0.8 19.9 1.0
CG A:LYS25 0.8 100.0 1.0
OD2 A:ASP29 0.9 42.9 1.0
CG1 A:VAL22 0.9 37.4 1.0
C A:THR188 1.0 41.5 1.0
CG A:ASP136 1.0 42.7 1.0
CZ3 D:TRP2 1.0 19.9 1.0
CG2 A:VAL9 1.1 6.1 1.0
N A:ILE24 1.1 31.4 1.0
OD2 A:ASP136 1.1 42.7 1.0
CB A:LYS25 1.1 100.0 1.0
CD A:PRO106 1.1 47.0 1.0
C8 A:NAG801 1.2 39.8 0.5
CG A:PRO155 1.2 51.0 1.0
N2 A:NAG801 1.2 39.8 0.5
O A:ASN104 1.2 47.5 1.0
CG A:PRO106 1.3 47.0 1.0
CG A:ARG30 1.3 100.0 1.0
C A:LEU189 1.4 33.2 1.0
CB A:VAL9 1.4 6.1 1.0
CA A:PRO106 1.4 47.0 1.0
O A:VAL191 1.4 36.5 1.0
OE1 A:GLU11 1.5 21.0 1.0
C A:ARG105 1.5 90.2 1.0
CA A:THR190 1.5 35.6 1.0
O7 A:NAG801 1.5 39.8 0.5
CD2 D:TRP2 1.5 19.9 1.0
CE1 A:PHE108 1.6 35.6 1.0
N A:GLY205 1.6 76.1 1.0
CG1 A:VAL98 1.6 58.2 1.0
O A:LEU189 1.6 33.2 1.0
CB A:PRO106 1.6 47.0 1.0
CG2 A:ILE24 1.6 13.3 1.0
CB A:ILE24 1.7 13.3 1.0
O A:ILE24 1.7 31.4 1.0
N A:THR190 1.7 35.6 1.0
N A:LEU189 1.7 33.2 1.0
C A:ASN104 1.7 47.5 1.0
O A:SER26 1.8 46.0 1.0
CB A:ASN104 1.8 79.0 1.0
CG A:ASP29 1.8 42.9 1.0
CB A:ARG30 1.8 100.0 1.0
C A:LYS25 1.9 38.0 1.0
C A:GLN23 1.9 24.3 1.0
O A:VAL9 1.9 14.4 1.0
N A:VAL191 1.9 36.5 1.0
CA A:LEU189 1.9 33.2 1.0
CA A:THR188 1.9 41.5 1.0
CD1 A:ILE7 2.0 23.8 1.0
NZ A:LYS25 2.0 100.0 1.0
CE A:LYS25 2.0 100.0 1.0
CD A:ARG30 2.0 100.0 1.0
CD A:GLU11 2.0 21.0 1.0
CB A:PRO155 2.0 51.0 1.0
CB A:VAL203 2.0 25.2 1.0
OD2 A:ASP103 2.0 33.9 1.0
CD2 A:LEU21 2.0 11.9 1.0
OD1 A:ASP29 2.0 42.9 1.0
CA A:GLU204 2.1 13.2 1.0
C A:GLU204 2.1 13.2 1.0
N A:THR188 2.1 41.5 1.0
O A:GLY205 2.1 76.1 1.0
CA A:ARG30 2.1 42.3 1.0
CE2 D:TRP2 2.1 19.9 1.0
OD1 A:ASP134 2.1 51.6 1.0
O A:VAL203 2.2 81.9 1.0
CA A:ASN104 2.2 47.5 1.0
CD A:PRO155 2.2 51.0 1.0
CZ A:PHE108 2.2 35.6 1.0
CD A:LYS25 2.2 100.0 1.0
CH2 D:TRP2 2.2 19.9 1.0
O A:GLN101 2.2 43.4 1.0
CB A:GLU11 2.2 21.0 1.0
O A:ILE99 2.2 22.6 1.0
C A:VAL203 2.3 81.9 1.0
C A:PRO106 2.3 47.0 1.0
OE2 A:GLU69 2.3 15.8 1.0
CA A:VAL98 2.3 12.8 1.0
O A:ARG105 2.3 90.2 1.0
CA A:CA905 2.3 22.4 1.0
CA A:ARG105 2.3 90.2 1.0
CG2 A:ILE96 2.3 10.2 1.0
CG D:TRP2 2.3 19.9 1.0
C A:THR190 2.4 35.6 1.0
N A:SER26 2.4 46.0 1.0
CB A:THR188 2.4 76.5 1.0
O A:GLN23 2.4 24.3 1.0
CB A:ASP154 2.4 82.0 1.0
CA A:VAL9 2.4 14.4 1.0
N A:ASN104 2.4 47.5 1.0
CB A:VAL22 2.4 37.4 1.0
CB A:ASP136 2.5 42.7 1.0
OD2 A:ASP134 2.5 51.6 1.0
C A:VAL191 2.5 36.5 1.0
OE2 A:GLU11 2.5 21.0 1.0
N A:GLU204 2.5 13.2 1.0
CB A:VAL98 2.5 58.2 1.0
CG1 A:VAL203 2.5 25.2 1.0
C A:GLY205 2.5 76.1 1.0
CG A:ARG68 2.5 39.4 1.0
N A:ARG105 2.5 90.2 1.0
N A:ARG30 2.5 42.3 1.0
N A:ASP154 2.5 55.9 1.0
CB A:THR190 2.5 32.9 1.0
CG1 A:VAL9 2.6 6.1 1.0
C A:VAL9 2.6 14.4 1.0
CG A:ASP134 2.6 51.6 1.0
CG1 A:ILE24 2.6 13.3 1.0
O A:PRO106 2.6 47.0 1.0
C A:VAL98 2.6 12.8 1.0
CA A:GLY205 2.6 76.1 1.0
CG2 A:ILE7 2.7 23.8 1.0
CZ2 D:TRP2 2.7 19.9 1.0
N A:ILE99 2.7 22.6 1.0
C2 A:NAG801 2.7 39.8 0.5
NE1 D:TRP2 2.7 19.9 1.0
N A:GLN101 2.7 43.4 1.0
O A:LYS183 2.7 45.1 1.0
CD1 D:TRP2 2.7 19.9 1.0
N A:VAL9 2.7 14.4 1.0
OG1 A:THR190 2.7 32.9 1.0
CA A:VAL203 2.7 81.9 1.0
CG2 A:THR190 2.8 32.9 1.0
O A:LYS25 2.8 38.0 1.0
CA A:ASP154 2.8 55.9 1.0
CD1 A:PHE108 2.8 35.6 1.0
C A:SER26 2.8 46.0 1.0
CD A:ARG68 2.8 39.4 1.0
CA A:VAL191 2.8 36.5 1.0
CB A:ILE7 2.8 23.8 1.0
CA A:ASP100 2.9 42.9 1.0
CG A:GLU11 2.9 21.0 1.0
CG2 A:VAL191 2.9 31.2 1.0
CA A:GLN23 2.9 24.3 1.0
N A:PRO155 2.9 51.0 1.0
CB A:LEU21 2.9 11.9 1.0
C A:ILE99 2.9 22.6 1.0
CG A:ASP103 2.9 33.9 1.0
C A:ASP154 2.9 55.9 1.0
CE A:MET60 2.9 57.7 1.0
C A:VAL22 2.9 42.2 1.0
OD2 A:ASP100 3.0 34.3 1.0
CD A:GLU69 3.0 15.8 1.0
OD1 A:ASP103 3.0 33.9 1.0
OE1 A:GLU69 3.0 15.8 1.0
CB A:ARG68 3.0 39.4 1.0
O A:ASN97 3.0 36.3 1.0
O A:GLU204 3.0 13.2 1.0
O A:VAL22 3.0 42.2 1.0
CG A:ASP100 3.0 34.3 1.0
O A:ILE7 3.0 16.4 1.0
OD1 A:ASP100 3.1 34.3 1.0
O A:ASN27 3.1 44.8 1.0
N A:GLN23 3.1 24.3 1.0
CB A:ASP29 3.1 42.9 1.0
N A:VAL203 3.1 81.9 1.0
OG1 A:THR188 3.1 76.5 1.0
CD1 A:PHE184 3.1 49.3 1.0
CG2 A:VAL22 3.1 37.4 1.0
CA A:ASN27 3.1 44.8 1.0
CA A:PRO155 3.1 51.0 1.0
CB D:TRP2 3.1 19.9 1.0
CB A:GLU204 3.1 97.6 1.0
CG A:LEU21 3.2 11.9 1.0
C A:ASP29 3.2 39.3 1.0
N A:GLU11 3.2 30.1 1.0
CA A:VAL22 3.2 42.2 1.0
CG1 A:ILE7 3.2 23.8 1.0
CG A:ASN104 3.2 79.0 1.0
CA A:ASP136 3.2 14.1 1.0
O A:VAL98 3.2 12.8 1.0
CG2 A:VAL98 3.2 58.2 1.0
CA A:GLU11 3.2 30.1 1.0
N A:LYS107 3.2 33.5 1.0
N A:ASP103 3.3 73.5 1.0
ND2 A:ASN104 3.3 79.0 1.0
C A:ASP100 3.3 42.9 1.0
C A:GLN101 3.3 43.4 1.0
C A:TYR187 3.3 35.4 1.0
CG2 A:THR188 3.3 76.5 1.0
N A:LYS206 3.3 48.0 1.0
N A:VAL22 3.3 42.2 1.0
C A:SER10 3.3 38.6 1.0
CA A:LYS206 3.3 48.0 1.0
CD1 A:ILE96 3.3 10.2 1.0
O A:ASP154 3.3 55.9 1.0
C3 A:NAG801 3.3 39.8 0.5
C A:ARG30 3.4 42.3 1.0
NE A:ARG30 3.4 100.0 1.0
CG1 A:ILE96 3.4 10.2 1.0
O A:LYS152 3.4 49.0 1.0
CA A:GLN192 3.4 41.4 1.0
N A:ASP136 3.4 14.1 1.0
O A:SER10 3.4 38.6 1.0
C1 A:NAG801 3.4 39.8 0.5
SD A:MET60 3.4 57.7 1.0
N A:ASP100 3.4 42.9 1.0
N A:GLN192 3.4 41.4 1.0
N A:ASP29 3.4 39.3 1.0
CB A:LEU189 3.4 21.9 1.0
C A:ASN27 3.4 44.8 1.0
CA A:SER26 3.5 46.0 1.0
O A:GLY58 3.5 61.8 1.0
O A:GLU186 3.5 40.4 1.0
CA A:TYR187 3.5 35.4 1.0
CB A:VAL191 3.5 31.2 1.0
OH A:TYR36 3.5 21.8 1.0
N A:ASN27 3.5 44.8 1.0
N A:VAL98 3.5 12.8 1.0
CE2 A:PHE108 3.5 35.6 1.0
O A:ARG30 3.5 42.3 1.0
CG A:ARG105 3.5 71.2 1.0
CA A:ILE99 3.5 22.6 1.0
CA A:ASP29 3.5 39.3 1.0
C A:LYS8 3.5 13.9 1.0
N A:ALA193 3.6 35.2 1.0
O A:THR190 3.6 35.6 1.0
NH1 A:ARG30 3.6 100.0 1.0
C A:ASP103 3.6 73.5 1.0
CB A:ARG105 3.6 71.2 1.0
CB A:MET60 3.6 57.7 1.0
CB A:ILE96 3.6 10.2 1.0
C A:ASN97 3.6 36.3 1.0
N A:SER10 3.6 38.6 1.0
CB A:ASP100 3.7 34.3 1.0
O3 A:NAG801 3.7 39.8 0.5
CA A:GLN101 3.7 43.4 1.0
NE A:ARG68 3.7 39.4 1.0
CG A:ASP154 3.7 82.0 1.0
CB A:ASP134 3.7 51.6 1.0
C A:GLN153 3.7 52.8 1.0
O A:ALA193 3.7 35.2 1.0
CE1 A:PHE184 3.8 49.3 1.0
O A:ASP29 3.8 39.3 1.0
CD1 A:LEU66 3.8 85.9 1.0
N A:ARG68 3.8 51.6 1.0
CA A:SER10 3.8 38.6 1.0
C A:ILE7 3.8 16.4 1.0
C A:LYS183 3.8 45.1 1.0
O A:LYS8 3.9 13.9 1.0
CG A:LYS206 3.9 58.0 1.0
CB A:ALA193 3.9 35.2 1.0
CD1 A:ILE24 3.9 13.3 1.0
CG A:PHE184 3.9 49.3 1.0
CA D:TRP2 3.9 36.4 1.0
CA A:ASP134 4.0 47.4 1.0
C A:LEU21 4.0 22.2 1.0
CA A:ARG68 4.0 51.6 1.0
CA A:ASP103 4.0 73.5 1.0
CG A:PHE108 4.0 35.6 1.0
CB A:PHE184 4.0 49.3 1.0
CZ A:ARG30 4.0 100.0 1.0
CA A:PHE184 4.1 62.0 1.0
CA A:GLN153 4.1 52.8 1.0
C A:GLN192 4.1 41.4 1.0
C A:SER202 4.1 45.8 1.0
O A:ASN143 4.1 41.2 1.0
C A:ASN102 4.1 33.5 1.0
O A:ALA207 4.1 49.9 1.0
CA A:ILE7 4.1 16.4 1.0
CA A:LEU21 4.1 22.2 1.0
CG A:GLN23 4.1 54.0 1.0
CA A:ASN102 4.1 33.5 1.0
CB A:GLN101 4.2 71.4 1.0
N A:ALA207 4.2 49.9 1.0
CB A:ASP103 4.2 33.9 1.0
CB A:TYR187 4.2 32.2 1.0
OD2 A:ASP154 4.2 82.0 1.0
CG1 A:VAL191 4.2 31.2 1.0
CA A:LYS107 4.2 33.5 1.0
OD1 A:ASN104 4.2 79.0 1.0
CG A:GLU204 4.2 97.6 1.0
O A:THR133 4.2 87.0 1.0
N A:GLU135 4.2 26.0 1.0
CB A:LYS206 4.2 58.0 1.0
CG A:MET60 4.2 57.7 1.0
CB A:ASN27 4.2 68.0 1.0
CB A:GLN23 4.2 54.0 1.0
OD2 A:ASP195 4.2 34.4 1.0
CA A:ALA193 4.3 35.2 1.0
N A:ASN102 4.3 33.5 1.0
O A:TYR187 4.3 35.4 1.0
CD2 A:PHE108 4.3 35.6 1.0
CG A:LEU189 4.4 21.9 1.0
CZ A:TYR36 4.4 21.8 1.0
C A:GLU186 4.4 40.4 1.0
N A:LYS28 4.4 31.3 1.0
C A:LYS206 4.4 48.0 1.0
OD1 A:ASP195 4.4 34.4 1.0
OD1 A:ASN102 4.4 55.7 1.0
CG A:GLU69 4.4 15.8 1.0
CD2 A:TYR187 4.4 32.2 1.0
C A:ALA193 4.4 35.2 1.0
C A:PRO155 4.4 51.0 1.0
CA A:ILE96 4.4 29.1 1.0
CA A:CA907 4.4 15.4 1.0
CA A:LYS8 4.4 13.9 1.0
CB A:GLN192 4.4 63.1 1.0
CD2 A:LEU189 4.4 21.9 1.0
O A:ASP100 4.4 42.9 1.0
CD1 A:LEU21 4.4 11.9 1.0
N A:PHE31 4.5 71.5 1.0
C A:GLU135 4.5 26.0 1.0
CD D:ARG30 4.5 100.0 1.0
CB A:ILE99 4.5 36.3 1.0
N A:TYR187 4.5 35.4 1.0
C A:LYS152 4.5 49.0 1.0
OD1 D:ASN27 4.5 68.0 1.0
CB A:SER26 4.5 29.6 1.0
N A:LYS8 4.5 13.9 1.0
CA A:LYS183 4.5 45.1 1.0
N A:ASN97 4.5 36.3 1.0
O A:ASP103 4.6 73.5 1.0
N A:PHE184 4.6 62.0 1.0
OD1 A:ASP154 4.6 82.0 1.0
C A:GLY58 4.6 61.8 1.0
C A:LYS28 4.6 31.3 1.0
CG A:TYR187 4.6 32.2 1.0
C A:GLU11 4.6 30.1 1.0
C A:ASP136 4.6 14.1 1.0
CG A:ASP195 4.6 34.4 1.0
C A:ASP134 4.7 47.4 1.0
O A:LEU21 4.7 22.2 1.0
OD2 A:ASP67 4.7 32.7 1.0
O A:SER202 4.7 45.8 1.0
CA A:SER202 4.7 45.8 1.0
O A:GLN153 4.8 52.8 1.0
O A:PRO155 4.8 51.0 1.0
CZ A:PHE184 4.8 49.3 1.0
CG A:GLN192 4.8 63.1 1.0
C4 A:NAG801 4.8 39.8 0.5
O5 A:NAG801 4.8 39.8 0.5
C A:ILE96 4.8 29.1 1.0
CB A:LYS183 4.8 56.8 1.0
N A:MET60 4.8 38.3 1.0
CE2 A:TYR36 4.8 21.8 1.0
CD1 A:ILE4 4.8 13.2 1.0
C D:TRP2 4.9 36.4 1.0
CG1 A:ILE99 4.9 36.3 1.0
CA A:GLY58 4.9 61.8 1.0
CA A:MET60 4.9 38.3 1.0
CG A:LYS183 4.9 56.8 1.0
CA A:ASN97 4.9 36.3 1.0
N A:GLN153 4.9 52.8 1.0
N A:GLU69 4.9 33.9 1.0
CD A:ARG105 4.9 71.2 1.0
C A:LYS107 4.9 33.5 1.0
N A:PHE108 4.9 20.8 1.0
CA A:GLU135 4.9 26.0 1.0
CZ A:ARG68 4.9 39.4 1.0
N A:ASP137 4.9 49.5 1.0
C A:ASP67 5.0 43.9 1.0
O A:LEU201 5.0 47.6 1.0

Calcium binding site 3 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 3 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca907

b:15.4
occ:1.00
 CD1 A:LEU66 0.7 85.9 1.0
CG A:LEU66 0.8 85.9 1.0
O3 A:NAG801 0.8 39.8 0.5
CA A:MET60 1.0 38.3 1.0
CB A:MET60 1.0 57.7 1.0
CA A:GLY58 1.1 61.8 1.0
O A:LEU66 1.2 41.6 1.0
CB A:LEU66 1.3 85.9 1.0
CG A:MET60 1.3 57.7 1.0
C A:GLY58 1.4 61.8 1.0
CE A:LYS206 1.4 58.0 1.0
CE1 A:TYR36 1.5 21.8 1.0
C A:LEU66 1.5 41.6 1.0
O A:GLY58 1.7 61.8 1.0
N A:MET60 1.7 38.3 1.0
CA A:ASP67 1.8 43.9 1.0
O A:ASP29 1.8 39.3 1.0
CD2 A:LEU66 1.8 85.9 1.0
OD1 A:ASN104 1.9 79.0 1.0
OD2 A:ASP67 1.9 32.7 1.0
N A:ASP67 1.9 43.9 1.0
C3 A:NAG801 1.9 39.8 0.5
O A:ARG30 2.0 42.3 1.0
C A:TRP59 2.0 34.8 1.0
O A:GLU204 2.0 13.2 1.0
CA A:LEU66 2.0 41.6 1.0
CE2 A:PHE51 2.0 39.5 1.0
C A:MET60 2.0 38.3 1.0
CG A:LYS206 2.1 58.0 1.0
CB A:ARG105 2.1 71.2 1.0
CD1 A:TYR36 2.2 21.8 1.0
OE2 A:GLU11 2.2 21.0 1.0
N A:GLY58 2.2 61.8 1.0
N A:LEU61 2.2 33.9 1.0
O A:ASP103 2.2 73.5 1.0
O A:TRP59 2.2 34.8 1.0
CD2 A:PHE51 2.3 39.5 1.0
CD A:LYS206 2.3 58.0 1.0
CG A:GLU11 2.3 21.0 1.0
OD1 A:ASP103 2.3 33.9 1.0
CB A:ASP29 2.3 42.9 1.0
N A:ARG105 2.3 90.2 1.0
CD1 A:ILE53 2.3 5.0 1.0
CZ A:TYR36 2.3 21.8 1.0
N A:TRP59 2.4 34.8 1.0
CG A:ASP103 2.4 33.9 1.0
CG A:ASN104 2.4 79.0 1.0
C4 A:NAG801 2.4 39.8 0.5
O4 A:NAG801 2.4 39.8 0.5
CG A:ARG105 2.4 71.2 1.0
OE1 A:GLU69 2.4 15.8 1.0
C A:GLU204 2.4 13.2 1.0
OD1 A:ASP29 2.5 42.9 1.0
OH A:TYR36 2.5 21.8 1.0
CA A:ASN104 2.5 47.5 1.0
CB A:ASP67 2.6 32.7 1.0
CG A:ASP67 2.6 32.7 1.0
CD A:GLU11 2.6 21.0 1.0
CG A:ASP29 2.6 42.9 1.0
C2 A:NAG801 2.7 39.8 0.5
ND2 A:ASN12 2.7 43.9 1.0
CG1 A:ILE53 2.7 5.0 1.0
CG1 A:VAL203 2.7 25.2 1.0
CB A:VAL62 2.7 20.8 1.0
O A:LEU61 2.7 33.9 1.0
OD2 A:ASP103 2.7 33.9 1.0
C A:ASP103 2.7 73.5 1.0
ND2 A:ASN104 2.7 79.0 1.0
O A:THR57 2.7 31.7 1.0
CE A:MET60 2.7 57.7 1.0
CG2 A:VAL62 2.7 20.8 1.0
N A:GLU204 2.8 13.2 1.0
CB A:GLU204 2.8 97.6 1.0
CA A:TRP59 2.8 34.8 1.0
CA A:ARG105 2.8 90.2 1.0
C A:THR57 2.8 31.7 1.0
N A:LEU66 2.8 41.6 1.0
O A:ILE24 2.8 31.4 1.0
CD1 A:LEU21 2.8 11.9 1.0
C A:ASP29 2.8 39.3 1.0
O A:PRO106 2.8 47.0 1.0
O A:GLY205 2.8 76.1 1.0
C A:ASP67 2.8 43.9 1.0
C A:LEU61 2.8 33.9 1.0
NZ A:LYS206 2.8 58.0 1.0
CD A:ARG105 2.8 71.2 1.0
O A:ARG105 2.8 90.2 1.0
O A:MET60 2.8 38.3 1.0
CB A:ASP103 2.9 33.9 1.0
CD2 A:LEU21 2.9 11.9 1.0
C A:ARG30 2.9 42.3 1.0
CB A:VAL203 2.9 25.2 1.0
CB A:ASN104 2.9 79.0 1.0
CA A:GLU204 2.9 13.2 1.0
SD A:MET60 2.9 57.7 1.0
C A:ARG105 3.0 90.2 1.0
N A:ARG68 3.0 51.6 1.0
OD2 A:ASP154 3.0 82.0 1.0
N A:ASN104 3.0 47.5 1.0
CA A:VAL62 3.0 38.4 1.0
CA A:LEU61 3.1 33.9 1.0
CG A:TYR36 3.1 21.8 1.0
CZ A:PHE51 3.1 39.5 1.0
OD1 A:ASN12 3.1 43.9 1.0
C A:ASN104 3.1 47.5 1.0
N A:GLY205 3.2 76.1 1.0
N A:VAL62 3.2 38.4 1.0
CB A:GLU11 3.2 21.0 1.0
N A:ASN12 3.2 34.7 1.0
CG A:ASN12 3.3 43.9 1.0
CG2 A:THR188 3.3 76.5 1.0
O A:ASN32 3.3 79.0 1.0
CA A:ASP29 3.3 39.3 1.0
OE1 A:GLU204 3.3 97.6 1.0
CG1 A:ILE24 3.3 13.3 1.0
CG A:LEU21 3.3 11.9 1.0
CE2 A:TYR36 3.4 21.8 1.0
CA A:ARG30 3.4 42.3 1.0
CA A:GLU11 3.4 30.1 1.0
N2 A:NAG801 3.4 39.8 0.5
C A:GLY205 3.5 76.1 1.0
O A:VAL22 3.5 42.2 1.0
OD2 A:ASP29 3.5 42.9 1.0
CB A:THR188 3.5 76.5 1.0
CG A:PHE51 3.5 39.5 1.0
CD A:GLU69 3.6 15.8 1.0
OD1 A:ASP67 3.6 32.7 1.0
CD2 A:TYR36 3.6 21.8 1.0
CD A:GLU204 3.6 97.6 1.0
CA A:ASP103 3.6 73.5 1.0
CB A:LYS206 3.6 58.0 1.0
CG1 A:VAL9 3.7 6.1 1.0
CB A:ILE53 3.7 5.0 1.0
N A:ARG30 3.7 42.3 1.0
CA A:GLY205 3.7 76.1 1.0
OE1 A:GLU11 3.7 21.0 1.0
CG A:GLU204 3.8 97.6 1.0
N A:PHE31 3.8 71.5 1.0
CA A:VAL203 3.8 81.9 1.0
C A:GLU11 3.8 30.1 1.0
CG1 A:VAL98 3.8 58.2 1.0
CB A:LEU21 3.8 11.9 1.0
OG1 A:THR188 3.8 76.5 1.0
C A:VAL203 3.9 81.9 1.0
CB A:TYR36 3.9 21.8 1.0
O A:GLU56 3.9 49.7 1.0
C5 A:NAG801 3.9 39.8 0.5
N A:ILE24 3.9 31.4 1.0
CG2 A:VAL203 3.9 25.2 1.0
O A:SER10 3.9 38.6 1.0
C A:PRO65 3.9 59.3 1.0
CG A:ASP154 3.9 82.0 1.0
N A:PRO106 3.9 47.0 1.0
O A:ASP67 3.9 43.9 1.0
CB A:PHE51 3.9 39.5 1.0
C A:PRO106 3.9 47.0 1.0
C1 A:NAG801 4.0 39.8 0.5
O A:ARG52 4.0 44.9 1.0
CG1 A:VAL62 4.0 20.8 1.0
C A:ILE24 4.0 31.4 1.0
CB A:ASP154 4.0 82.0 1.0
CH2 D:TRP2 4.0 19.9 1.0
OG1 A:THR190 4.1 32.9 1.0
OE2 A:GLU204 4.1 97.6 1.0
CD1 A:ILE96 4.1 10.2 1.0
CA A:THR57 4.1 31.7 1.0
CD1 A:ILE24 4.1 13.3 1.0
CB A:VAL34 4.1 5.0 1.0
C A:PHE31 4.1 71.5 1.0
CA A:ILE53 4.2 54.7 1.0
O A:PHE31 4.2 71.5 1.0
CD A:PRO155 4.2 51.0 1.0
NE A:ARG105 4.2 71.2 1.0
O5 A:NAG801 4.2 39.8 0.5
CZ3 D:TRP2 4.2 19.9 1.0
CB A:TRP59 4.2 24.2 1.0
CA A:PHE31 4.2 71.5 1.0
O A:GLU54 4.3 37.9 1.0
CG A:GLU69 4.3 15.8 1.0
NZ A:LYS25 4.3 100.0 1.0
CA A:ASN12 4.3 34.7 1.0
CE1 A:PHE51 4.3 39.5 1.0
C A:GLU56 4.3 49.7 1.0
CG2 A:VAL34 4.3 5.0 1.0
O A:ASN104 4.3 47.5 1.0
C A:ASN32 4.4 79.0 1.0
O A:ARG64 4.4 61.5 1.0
N A:THR57 4.4 31.7 1.0
CA A:LYS206 4.4 48.0 1.0
CG2 A:THR190 4.4 32.9 1.0
C7 A:NAG801 4.4 39.8 0.5
CG A:PRO155 4.4 51.0 1.0
N A:LYS206 4.4 48.0 1.0
CA A:ARG68 4.4 51.6 1.0
N A:ASN32 4.4 79.0 1.0
CA A:CA906 4.4 5.0 1.0
CA A:ILE24 4.4 31.4 1.0
CB A:VAL9 4.4 6.1 1.0
CG2 A:VAL9 4.4 6.1 1.0
CB A:ASN12 4.5 43.9 1.0
O7 A:NAG801 4.5 39.8 0.5
N A:VAL34 4.5 29.4 1.0
OE2 A:GLU69 4.5 15.8 1.0
CB A:LEU61 4.5 18.0 1.0
O A:PRO65 4.5 59.3 1.0
CB A:GLU69 4.5 15.8 1.0
CB A:ILE24 4.5 13.3 1.0
CG A:ARG30 4.5 100.0 1.0
CD1 A:PHE51 4.5 39.5 1.0
N A:ASP103 4.5 73.5 1.0
CA A:LYS25 4.5 38.0 1.0
C A:VAL62 4.6 38.4 1.0
N A:GLU69 4.6 33.9 1.0
OD1 A:ASP136 4.6 42.7 1.0
N A:GLU11 4.6 30.1 1.0
CA A:PRO106 4.6 47.0 1.0
CA A:GLN23 4.6 24.3 1.0
O A:VAL34 4.6 29.4 1.0
CA A:PHE51 4.6 39.4 1.0
CG1 A:VAL50 4.6 18.9 1.0
O A:SER26 4.7 46.0 1.0
C A:VAL22 4.7 42.2 1.0
O6 A:NAG801 4.7 39.8 0.5
N A:ASP29 4.7 39.3 1.0
N A:GLU54 4.7 37.9 1.0
CG A:LYS25 4.7 100.0 1.0
CB A:ARG30 4.7 100.0 1.0
O A:THR188 4.7 41.5 1.0
CZ2 D:TRP2 4.7 19.9 1.0
N A:LEU21 4.8 22.2 1.0
C A:SER10 4.8 38.6 1.0
CD1 A:PHE108 4.8 35.6 1.0
O A:VAL50 4.8 19.0 1.0
C A:ARG52 4.8 44.9 1.0
O A:TRP55 4.8 60.6 1.0
CG2 A:VAL98 4.8 58.2 1.0
C A:GLN23 4.8 24.3 1.0
CA A:LYS107 4.8 33.5 1.0
CD A:PRO106 4.8 47.0 1.0
CE1 A:PHE108 4.9 35.6 1.0
N A:VAL22 4.9 42.2 1.0
N A:SER26 4.9 46.0 1.0
C6 A:NAG801 4.9 39.8 0.5
CA A:THR188 4.9 41.5 1.0
N A:LYS25 4.9 38.0 1.0
CA A:ASN32 4.9 79.0 1.0
N A:LYS107 4.9 33.5 1.0
CA A:PRO65 4.9 59.3 1.0
CA A:LYS33 4.9 85.9 1.0
CB A:THR190 4.9 32.9 1.0
CA A:LEU21 4.9 22.2 1.0
CG2 A:ILE24 4.9 13.3 1.0
CA A:VAL34 4.9 29.4 1.0
CG1 A:VAL34 5.0 5.0 1.0
CG A:ARG68 5.0 39.4 1.0
CG2 A:ILE53 5.0 5.0 1.0
OG1 A:THR57 5.0 5.0 1.0
O A:VAL203 5.0 81.9 1.0
O A:GLU11 5.0 30.1 1.0
CB A:ARG68 5.0 39.4 1.0

Calcium binding site 4 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 4 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca908

b:10.5
occ:1.00
 N A:VAL117 0.2 41.7 1.0
CA A:ILE220 0.4 52.3 1.0
CA A:LYS224 0.4 96.8 1.0
CB A:THR225 0.4 68.6 1.0
O A:VAL117 0.6 41.7 1.0
O A:THR212 0.6 55.3 1.0
CB B:GLU93 0.6 78.2 1.0
OD2 A:ASP248 0.6 28.0 1.0
C A:LYS224 0.7 96.8 1.0
C A:SER116 0.8 44.6 1.0
N A:THR225 0.8 79.0 1.0
CB A:ALA129 0.9 64.7 1.0
N A:ILE220 1.0 52.3 1.0
CA B:GLU93 1.0 49.6 1.0
OG1 A:THR225 1.1 68.6 1.0
O A:SER116 1.3 44.6 1.0
CA A:THR225 1.3 79.0 1.0
O3 A:NAG807 1.3 62.6 0.5
CA A:MET128 1.3 47.7 1.0
C A:VAL117 1.3 41.7 1.0
CA A:VAL117 1.4 41.7 1.0
N A:PHE221 1.4 71.6 1.0
CB A:ILE220 1.4 46.5 1.0
N A:THR212 1.4 55.3 1.0
OE2 A:GLU119 1.4 8.7 1.0
CA A:ALA129 1.4 64.7 1.0
N B:GLU93 1.4 49.6 1.0
C A:ILE220 1.5 52.3 1.0
N A:ALA129 1.5 64.7 1.0
O A:ALA218 1.5 45.7 1.0
O B:GLU93 1.5 49.6 1.0
CB A:ASN217 1.6 53.4 1.0
CG B:GLU93 1.6 78.2 1.0
CG A:ASP248 1.6 28.0 1.0
C A:THR212 1.7 55.3 1.0
CG2 A:THR225 1.7 68.6 1.0
CB A:LYS224 1.7 100.0 1.0
C A:MET128 1.7 47.7 1.0
N A:LYS224 1.8 96.8 1.0
O7 A:NAG807 1.8 62.6 0.5
C B:GLU93 1.8 49.6 1.0
O A:LYS224 1.8 96.8 1.0
CB A:PHE221 1.9 54.2 1.0
C A:PRO219 1.9 52.0 1.0
SD B:MET92 1.9 52.6 1.0
CG2 B:ILE4 2.0 13.2 1.0
CA A:ASP213 2.1 43.1 1.0
C A:ILE211 2.1 51.1 1.0
CA A:SER116 2.1 44.6 1.0
C A:ALA129 2.1 64.7 1.0
CA A:THR212 2.2 55.3 1.0
C3 A:NAG807 2.2 62.6 0.5
ND2 A:ASN217 2.2 53.4 1.0
N A:MET128 2.2 47.7 1.0
CG1 A:ILE220 2.2 46.5 1.0
CB A:MET128 2.2 11.1 1.0
O A:PRO223 2.2 64.6 1.0
OE1 A:GLU182 2.3 17.1 1.0
CG A:ASN217 2.3 53.4 1.0
CG2 A:VAL117 2.3 18.7 1.0
O A:VAL127 2.3 46.7 1.0
CA A:PHE221 2.3 71.6 1.0
N A:ALA214 2.3 30.5 1.0
O A:ALA214 2.3 30.5 1.0
N A:SER116 2.3 44.6 1.0
CB A:VAL117 2.4 18.7 1.0
CG2 A:ILE220 2.4 46.5 1.0
N A:LEU247 2.4 48.5 1.0
OD1 A:ASP213 2.4 47.1 1.0
OD1 A:ASP248 2.4 28.0 1.0
C A:VAL127 2.4 46.7 1.0
CG A:MET128 2.4 11.1 1.0
OE2 B:GLU93 2.4 78.2 1.0
O A:ALA129 2.4 64.7 1.0
CG2 A:VAL127 2.4 43.6 1.0
C A:THR225 2.5 79.0 1.0
CG A:LYS224 2.5 100.0 1.0
CD B:GLU93 2.5 78.2 1.0
OD1 A:ASP216 2.5 10.1 1.0
O A:PRO219 2.5 52.0 1.0
CD A:GLU119 2.5 8.7 1.0
N A:ASP213 2.5 43.1 1.0
C A:PRO223 2.5 64.6 1.0
N A:ASP248 2.5 22.1 1.0
CG A:ASP213 2.5 47.1 1.0
N A:ARG118 2.5 36.5 1.0
C B:MET92 2.5 50.6 1.0
CD A:LYS224 2.5 100.0 1.0
NZ A:LYS73 2.5 51.0 1.0
OD1 A:ASP246 2.5 13.3 1.0
O A:ILE220 2.6 52.3 1.0
C A:ALA218 2.6 45.7 1.0
CB A:ASP248 2.6 28.0 1.0
OG A:SER131 2.6 0.0 1.0
O A:MET128 2.6 47.7 1.0
CA A:ILE211 2.6 51.1 1.0
CB B:ILE4 2.6 13.2 1.0
C7 A:NAG807 2.6 62.6 0.5
CA A:PRO219 2.6 52.0 1.0
C A:ASP213 2.6 43.1 1.0
CA A:ARG118 2.6 36.5 1.0
O A:THR245 2.7 71.2 1.0
CG1 A:VAL3 2.7 72.0 1.0
CE B:MET92 2.7 52.6 1.0
OD2 A:ASP213 2.7 47.1 1.0
O A:ILE211 2.7 51.1 1.0
CA A:ASP248 2.7 22.1 1.0
O A:PHE221 2.7 71.6 1.0
OE1 A:GLU93 2.7 78.2 1.0
CD A:GLU182 2.7 17.1 1.0
CG2 A:ILE211 2.8 33.3 1.0
CA A:ASP246 2.8 85.4 1.0
CG A:PHE221 2.8 54.2 1.0
CD1 B:ILE4 2.8 13.2 1.0
CA A:ASN217 2.8 65.3 1.0
O A:THR225 2.8 79.0 1.0
CB A:THR212 2.8 70.1 1.0
O A:GLN210 2.8 30.5 1.0
N A:GLU119 2.9 44.1 1.0
N A:VAL130 2.9 47.8 1.0
CD1 A:PHE221 3.0 54.2 1.0
CB A:ARG181 3.0 47.9 1.0
N B:ILE94 3.0 50.8 1.0
CB A:ASP213 3.0 47.1 1.0
CG A:GLU119 3.0 8.7 1.0
OE2 A:GLU182 3.0 17.1 1.0
N A:ASN217 3.1 65.3 1.0
C A:PHE221 3.1 71.6 1.0
C A:LEU247 3.1 48.5 1.0
OG1 A:THR212 3.1 70.1 1.0
C A:ASN217 3.1 65.3 1.0
N A:PRO219 3.1 52.0 1.0
CA A:LEU247 3.1 48.5 1.0
CG B:MET92 3.1 52.6 1.0
C A:ASP246 3.2 85.4 1.0
OD1 A:ASN217 3.2 53.4 1.0
O B:MET92 3.2 50.6 1.0
CG A:ASP246 3.2 13.3 1.0
CB A:SER116 3.2 90.8 1.0
O4 A:NAG807 3.2 62.6 0.5
CG1 B:ILE4 3.2 13.2 1.0
C A:ARG118 3.2 36.5 1.0
N A:ALA218 3.3 45.7 1.0
C4 A:NAG807 3.3 62.6 0.5
CB B:MET92 3.3 52.6 1.0
C2 A:NAG807 3.3 62.6 0.5
CB A:LEU247 3.3 11.6 1.0
N2 A:NAG807 3.3 62.6 0.5
CB A:ASP1 3.4 0.0 1.0
CB A:ILE211 3.4 33.3 1.0
OE1 A:GLU119 3.4 8.7 1.0
C8 A:NAG807 3.4 62.6 0.5
CB A:GLU119 3.4 8.7 1.0
OE1 B:GLU93 3.4 78.2 1.0
C A:ALA214 3.4 30.5 1.0
CG A:GLU182 3.4 17.1 1.0
CD1 A:LEU247 3.4 11.6 1.0
CA B:MET92 3.4 50.6 1.0
C A:THR245 3.5 71.2 1.0
C A:GLY115 3.5 74.2 1.0
CA A:VAL127 3.5 46.7 1.0
CD A:ARG181 3.5 47.9 1.0
CA A:ALA214 3.5 30.5 1.0
CG1 A:VAL117 3.5 18.7 1.0
O A:ASN217 3.5 65.3 1.0
CB A:VAL127 3.6 43.6 1.0
CG A:ASP1 3.6 0.0 1.0
N A:TYR226 3.6 66.4 1.0
NE A:ARG181 3.6 47.9 1.0
OG A:SER116 3.6 90.8 1.0
CD1 A:ILE220 3.6 46.5 1.0
CB A:ASP246 3.6 13.3 1.0
N A:ASP246 3.6 85.4 1.0
CA A:GLY115 3.7 74.2 1.0
CG A:ASP216 3.7 10.1 1.0
O A:VAL130 3.7 47.8 1.0
CA A:ALA218 3.7 45.7 1.0
O A:ASP213 3.7 43.1 1.0
O A:THR318 3.7 63.9 1.0
OD2 A:ASP1 3.7 0.0 1.0
CG A:ARG181 3.7 47.9 1.0
CE A:LYS224 3.8 100.0 1.0
N A:ILE211 3.8 51.1 1.0
CB A:SER131 3.8 0.0 1.0
CA A:CA910 3.8 10.5 1.0
O A:LEU247 3.8 48.5 1.0
C A:GLN210 3.8 30.5 1.0
CB A:ARG118 3.8 92.0 1.0
CE A:LYS73 3.8 51.0 1.0
C A:VAL130 3.8 47.8 1.0
CA A:VAL130 3.9 47.8 1.0
CA B:ILE4 3.9 39.3 1.0
C1 A:NAG807 3.9 62.6 0.5
OD1 A:ASP1 3.9 0.0 1.0
N A:ASP216 3.9 48.2 1.0
CA A:GLU119 3.9 44.1 1.0
CG2 A:ILE209 3.9 13.7 1.0
OD2 A:ASP246 3.9 13.3 1.0
CG A:ARG118 4.0 92.0 1.0
NZ A:LYS224 4.0 100.0 1.0
CB A:ALA214 4.0 30.5 1.0
CD A:GLU93 4.0 78.2 1.0
CB A:VAL3 4.0 72.0 1.0
O B:VAL3 4.0 65.7 1.0
CA A:PRO223 4.0 64.6 1.0
N B:ILE4 4.0 39.3 1.0
CB A:PRO219 4.0 52.0 1.0
O B:LEU76 4.1 40.1 1.0
CD2 A:PHE221 4.1 54.2 1.0
CA B:ILE94 4.1 50.8 1.0
CG2 A:THR212 4.1 70.1 1.0
CB A:ASP216 4.2 10.1 1.0
N A:PRO223 4.2 64.6 1.0
C B:VAL3 4.2 65.7 1.0
SD A:MET128 4.2 11.1 1.0
CA A:ARG181 4.2 27.8 1.0
CG A:LEU247 4.2 11.6 1.0
C A:ASP248 4.2 22.1 1.0
CG1 B:ILE94 4.2 98.0 1.0
C A:ASP216 4.2 48.2 1.0
O A:THR316 4.2 79.8 1.0
C5 A:NAG807 4.2 62.6 0.5
N A:ARG181 4.3 27.8 1.0
O A:ARG118 4.3 36.5 1.0
CG1 B:VAL75 4.3 25.8 1.0
CE1 A:PHE221 4.3 54.2 1.0
CG1 A:ILE211 4.3 33.3 1.0
O A:ASP246 4.3 85.4 1.0
N A:SER131 4.4 49.9 1.0
CA A:SER131 4.4 49.9 1.0
N A:THR245 4.4 71.2 1.0
O A:GLY115 4.4 74.2 1.0
N A:ASP222 4.4 93.7 1.0
CA A:ASP216 4.4 48.2 1.0
OD2 A:ASP216 4.5 10.1 1.0
OG1 A:THR95 4.5 36.7 1.0
OE1 A:GLN210 4.5 100.0 1.0
C8 A:NAG812 4.5 67.8 0.5
CA A:ALA317 4.6 65.8 1.0
CD A:PRO219 4.6 52.0 1.0
N A:ASN215 4.6 34.3 1.0
CA A:THR245 4.6 71.2 1.0
OD1 A:ASN138 4.6 77.1 1.0
CG1 A:VAL127 4.6 43.6 1.0
N A:THR318 4.6 63.9 1.0
O A:TYR226 4.6 66.4 1.0
CB A:ALA317 4.7 65.8 1.0
CG2 A:THR227 4.7 92.2 1.0
OE2 A:GLU93 4.7 78.2 1.0
C A:ASN215 4.7 34.3 1.0
CB A:PRO223 4.7 64.6 1.0
CB A:ALA218 4.7 45.7 1.0
O5 A:NAG807 4.7 62.6 0.5
CZ A:ARG181 4.7 47.9 1.0
CA A:ASN215 4.7 34.3 1.0
CA A:ASP1 4.7 19.4 1.0
NH2 A:ARG181 4.7 47.9 1.0
C A:ASP222 4.7 93.7 1.0
O A:ARG114 4.7 37.8 1.0
N A:MET249 4.7 41.8 1.0
CE A:MET128 4.7 11.1 1.0
N B:MET92 4.8 50.6 1.0
CA A:CA909 4.8 12.9 1.0
CG2 A:VAL3 4.8 72.0 1.0
CA A:TYR226 4.8 66.4 1.0
N A:VAL127 4.8 46.7 1.0
C A:THR318 4.8 63.9 1.0
CA A:ASP222 4.8 93.7 1.0
CB A:GLU93 4.8 78.2 1.0
CB A:SER315 4.8 41.5 1.0
N A:GLU182 4.8 40.6 1.0
CA A:VAL3 4.8 65.7 1.0
CD A:LYS73 4.9 51.0 1.0
ND2 A:ASN138 4.9 77.1 1.0
O A:THR169 4.9 16.1 1.0
CD A:ARG118 4.9 92.0 1.0
N A:ASP1 4.9 19.4 1.0
CD1 A:ILE139 4.9 51.9 1.0
CB B:ILE94 4.9 98.0 1.0
O B:ILE4 4.9 39.3 1.0
CG A:PRO219 4.9 52.0 1.0
OG1 A:THR245 4.9 93.2 1.0
CA B:VAL3 5.0 65.7 1.0
OG1 A:THR318 5.0 70.0 1.0
CB A:GLU182 5.0 17.1 1.0
CG A:GLU93 5.0 78.2 1.0
O A:ASP248 5.0 22.1 1.0
O5 A:NAG806 5.0 64.2 0.8

Calcium binding site 5 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 5 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca909

b:12.9
occ:1.00
 N B:MET92 0.3 50.6 1.0
CA A:VAL3 0.7 65.7 1.0
O A:TRP2 0.9 36.4 1.0
OD2 A:ASP1 1.1 0.0 1.0
N A:VAL3 1.1 65.7 1.0
C A:GLY170 1.1 47.0 1.0
O A:THR169 1.1 16.1 1.0
CB A:VAL3 1.1 72.0 1.0
CG1 A:VAL127 1.2 43.6 1.0
CG2 A:ILE139 1.2 51.9 1.0
O A:GLY170 1.3 47.0 1.0
CG2 A:VAL3 1.4 72.0 1.0
C A:TRP2 1.4 36.4 1.0
OE1 A:GLU119 1.4 8.7 1.0
C B:PRO91 1.5 26.5 1.0
N A:ILE172 1.5 33.8 1.0
CD1 A:ILE220 1.5 46.5 1.0
CB B:MET92 1.5 52.6 1.0
CB A:ILE172 1.6 42.6 1.0
CB A:ILE139 1.6 51.9 1.0
CA B:MET92 1.7 50.6 1.0
C A:VAL3 1.7 65.7 1.0
O B:LYS25 1.7 38.0 1.0
CB A:GLU119 1.8 8.7 1.0
ND2 A:ASN138 1.8 77.1 1.0
N A:VAL171 1.8 33.5 1.0
C A:THR169 1.8 16.1 1.0
CD1 A:LEU179 1.9 33.9 1.0
OE2 A:GLU182 1.9 17.1 1.0
CA A:GLY170 2.0 47.0 1.0
OD1 A:ASP180 2.0 24.0 1.0
O A:LEU179 2.0 22.6 1.0
CA A:VAL171 2.0 33.5 1.0
CB A:VAL127 2.0 43.6 1.0
CG A:ASP1 2.0 0.0 1.0
N A:ILE4 2.0 39.3 1.0
CA A:ILE172 2.1 33.8 1.0
O A:ASN138 2.1 29.0 1.0
OD1 A:ASN217 2.1 53.4 1.0
CG A:PRO6 2.1 23.7 1.0
CE B:MET92 2.1 52.6 1.0
C A:VAL171 2.1 33.5 1.0
C A:LEU179 2.1 22.6 1.0
CB A:LEU179 2.2 33.9 1.0
OG B:SER77 2.2 31.1 1.0
CG A:ASN138 2.2 77.1 1.0
N A:GLY170 2.2 47.0 1.0
OD1 A:ASP1 2.2 0.0 1.0
CA A:ASP180 2.2 28.1 1.0
CG1 A:VAL3 2.2 72.0 1.0
O B:PRO91 2.3 26.5 1.0
OD2 A:ASP216 2.3 10.1 1.0
CG2 A:VAL127 2.4 43.6 1.0
CA A:GLU119 2.4 44.1 1.0
N A:TRP2 2.4 36.4 1.0
CB B:PRO91 2.4 26.5 1.0
OD1 A:ASN138 2.4 77.1 1.0
CG B:MET92 2.5 52.6 1.0
N A:ASP180 2.5 28.1 1.0
C A:ASN138 2.5 29.0 1.0
C B:MET92 2.5 50.6 1.0
CG1 A:ILE172 2.5 42.6 1.0
CG2 A:ILE172 2.5 42.6 1.0
CG A:ASN217 2.5 53.4 1.0
CG1 A:ILE139 2.6 51.9 1.0
CD A:GLU119 2.6 8.7 1.0
CG1 A:ILE220 2.6 46.5 1.0
CE1 A:TYR148 2.6 42.1 1.0
CA B:PRO91 2.6 26.5 1.0
CG A:ASP216 2.6 10.1 1.0
CG A:LEU179 2.6 33.9 1.0
CG2 A:VAL117 2.6 18.7 1.0
C A:ILE172 2.6 33.8 1.0
O A:VAL3 2.6 65.7 1.0
CA A:TRP2 2.6 36.4 1.0
OH A:TYR148 2.6 42.1 1.0
CG A:ASP180 2.6 24.0 1.0
CB A:ASP216 2.6 10.1 1.0
CA A:ILE139 2.6 97.2 1.0
N A:ILE139 2.6 97.2 1.0
O A:ILE172 2.7 33.8 1.0
CD1 A:ILE139 2.7 51.9 1.0
CD A:PRO6 2.7 23.7 1.0
ND2 A:ASN217 2.7 53.4 1.0
CG A:GLU119 2.8 8.7 1.0
CB A:ASN138 2.8 77.1 1.0
N A:MET128 2.8 47.7 1.0
CG A:LYS224 2.8 100.0 1.0
CB A:TRP2 2.8 19.9 1.0
C B:LYS25 2.9 38.0 1.0
CZ A:TYR148 2.9 42.1 1.0
CD A:GLU182 3.0 17.1 1.0
O B:MET92 3.0 50.6 1.0
N A:ARG181 3.0 27.8 1.0
CG2 A:ILE211 3.0 33.3 1.0
C A:ASP180 3.0 28.1 1.0
CD A:LYS224 3.0 100.0 1.0
CA A:LEU179 3.0 22.6 1.0
CE2 A:PHE163 3.0 23.1 1.0
OG B:SER78 3.0 44.7 1.0
OD2 A:ASP137 3.0 70.9 1.0
CB A:ASP180 3.1 24.0 1.0
O A:VAL130 3.1 47.8 1.0
C A:GLU119 3.1 44.1 1.0
CB A:ASP1 3.1 0.0 1.0
CB B:LYS25 3.1 100.0 1.0
CD2 A:LEU179 3.1 33.9 1.0
CA A:THR169 3.1 16.1 1.0
O A:GLU119 3.1 44.1 1.0
O B:SER78 3.1 36.9 1.0
O A:MET128 3.1 47.7 1.0
O A:GLU168 3.1 48.4 1.0
CB A:LYS224 3.1 100.0 1.0
N B:LYS25 3.2 38.0 1.0
OE1 A:GLU182 3.2 17.1 1.0
OD1 A:ASP216 3.2 10.1 1.0
CA B:LYS25 3.2 38.0 1.0
O A:ILE4 3.2 39.3 1.0
CB A:VAL117 3.2 18.7 1.0
CA A:VAL127 3.3 46.7 1.0
CA A:ASN138 3.3 29.0 1.0
C A:ILE4 3.3 39.3 1.0
N A:GLU119 3.3 44.1 1.0
SD B:MET92 3.3 52.6 1.0
OD2 A:ASP140 3.3 95.0 1.0
C A:MET128 3.3 47.7 1.0
O A:VAL171 3.3 33.5 1.0
CD1 A:ILE172 3.3 42.6 1.0
OD2 A:ASP180 3.3 24.0 1.0
N B:GLU93 3.3 49.6 1.0
CB A:VAL171 3.4 47.5 1.0
CA A:ALA129 3.4 64.7 1.0
CD2 A:PHE163 3.4 23.1 1.0
CA A:ILE4 3.4 39.3 1.0
C A:ASP1 3.4 19.4 1.0
CA A:MET128 3.4 47.7 1.0
N A:VAL130 3.4 47.8 1.0
CB B:SER77 3.5 31.1 1.0
CB A:MET128 3.5 11.1 1.0
CB A:ASN217 3.5 53.4 1.0
CB A:PRO6 3.5 23.7 1.0
CD B:LYS25 3.5 100.0 1.0
CD1 A:TYR148 3.5 42.1 1.0
CE A:LYS224 3.5 100.0 1.0
N A:SER173 3.6 20.9 1.0
NZ A:LYS224 3.6 100.0 1.0
OE2 A:GLU119 3.6 8.7 1.0
CG1 A:VAL171 3.6 47.5 1.0
C A:VAL127 3.6 46.7 1.0
N A:ASN138 3.6 29.0 1.0
N A:ALA129 3.6 64.7 1.0
CD1 A:ILE211 3.7 33.3 1.0
N A:VAL127 3.7 46.7 1.0
CG1 A:ILE211 3.7 33.3 1.0
O A:ARG118 3.7 36.5 1.0
C A:ASP216 3.7 48.2 1.0
O B:GLU90 3.7 50.6 1.0
N B:PRO91 3.7 26.5 1.0
O A:ASP216 3.7 48.2 1.0
N A:PRO6 3.7 23.7 1.0
CA A:PRO5 3.8 5.9 1.0
CG2 A:VAL171 3.8 47.5 1.0
CG B:LYS25 3.8 100.0 1.0
CA A:ASP1 3.8 19.4 1.0
C A:ILE139 3.8 97.2 1.0
C A:ARG118 3.8 36.5 1.0
N A:PRO5 3.8 5.9 1.0
N B:SER78 3.8 36.9 1.0
CG B:PRO91 3.9 26.5 1.0
CA A:ASN217 3.9 65.3 1.0
CG1 A:VAL117 3.9 18.7 1.0
CB A:ILE220 3.9 46.5 1.0
N B:SER26 3.9 46.0 1.0
CA A:ASP216 3.9 48.2 1.0
O6 A:NAG806 3.9 64.2 0.8
CG A:GLU182 4.0 17.1 1.0
N A:ASN217 4.0 65.3 1.0
C A:ALA129 4.0 64.7 1.0
CB A:THR169 4.0 12.5 1.0
N A:THR169 4.0 16.1 1.0
C B:SER78 4.0 36.9 1.0
CG A:TRP2 4.0 19.9 1.0
CZ A:PHE163 4.0 23.1 1.0
ND2 A:ASN97 4.0 23.7 1.0
CB A:ILE211 4.1 33.3 1.0
C A:GLU168 4.1 48.4 1.0
CG2 A:ILE220 4.1 46.5 1.0
CG1 A:ILE165 4.1 29.6 1.0
CD1 A:ILE209 4.1 13.7 1.0
O A:ASP180 4.1 28.1 1.0
N A:LEU179 4.1 22.6 1.0
CD1 A:ILE165 4.1 29.6 1.0
CA B:SER77 4.1 20.9 1.0
CG A:ASP137 4.1 70.9 1.0
CG2 A:ILE4 4.1 13.2 1.0
CG2 A:ILE209 4.1 13.7 1.0
O A:ASP1 4.1 19.4 1.0
C A:VAL130 4.2 47.8 1.0
CE2 A:TYR148 4.2 42.1 1.0
CA A:SER173 4.2 20.9 1.0
CG2 A:THR225 4.2 68.6 1.0
OG1 A:THR225 4.2 68.6 1.0
CB B:SER78 4.2 44.7 1.0
C A:PRO5 4.2 5.9 1.0
CB A:GLU182 4.2 17.1 1.0
CE B:LYS25 4.3 100.0 1.0
C B:ILE24 4.3 31.4 1.0
CA A:VAL130 4.3 47.8 1.0
O A:ILE139 4.3 97.2 1.0
O A:VAL117 4.3 41.7 1.0
C B:GLU90 4.3 50.6 1.0
N A:GLY120 4.3 54.5 1.0
CB A:ILE4 4.3 13.2 1.0
CA A:ARG181 4.3 27.8 1.0
CB B:ILE24 4.4 13.3 1.0
OG1 A:THR169 4.4 12.5 1.0
CA B:SER78 4.4 36.9 1.0
CA B:SER26 4.4 46.0 1.0
CA A:PRO6 4.4 23.7 1.0
CA B:GLU93 4.4 49.6 1.0
CB A:ALA129 4.4 64.7 1.0
N A:ASP140 4.4 54.0 1.0
CD1 A:TRP2 4.4 19.9 1.0
CD B:PRO91 4.5 26.5 1.0
CG A:ASP140 4.5 95.0 1.0
CA A:VAL117 4.5 41.7 1.0
C A:VAL117 4.5 41.7 1.0
CG A:TYR148 4.5 42.1 1.0
C B:SER77 4.5 20.9 1.0
CG A:MET128 4.5 11.1 1.0
O4 A:NAG807 4.5 62.6 0.5
C A:SER173 4.5 20.9 1.0
OD1 A:ASN97 4.5 23.7 1.0
N A:GLU182 4.5 40.6 1.0
OD1 A:ASP137 4.5 70.9 1.0
O A:GLY144 4.6 31.3 1.0
CB A:VAL130 4.6 39.9 1.0
N A:ALA218 4.6 45.7 1.0
CG A:PHE163 4.6 23.1 1.0
CG A:ASN97 4.6 23.7 1.0
CA A:LYS224 4.6 96.8 1.0
CA B:ILE24 4.7 31.4 1.0
CE1 B:HIS79 4.7 22.7 1.0
N A:LEU174 4.7 17.0 1.0
CD1 A:LEU174 4.7 39.9 1.0
O A:ASN166 4.7 19.5 1.0
CD2 A:TYR148 4.7 42.1 1.0
CB A:LEU174 4.8 39.9 1.0
OG A:SER315 4.8 41.5 1.0
CB A:ARG181 4.8 47.9 1.0
CA A:CA908 4.8 10.5 1.0
O A:ALA218 4.8 45.7 1.0
CG1 A:ILE209 4.8 13.7 1.0
O A:SER173 4.8 20.9 1.0
O5 A:NAG806 4.8 64.2 0.8
N A:ASP216 4.9 48.2 1.0
CB A:THR225 4.9 68.6 1.0
O A:VAL127 4.9 46.7 1.0
CA A:ILE211 4.9 51.1 1.0
N A:VAL117 4.9 41.7 1.0
C6 A:NAG806 4.9 64.2 0.8
N A:ARG118 4.9 36.5 1.0
CD A:PRO5 4.9 5.9 1.0
OD2 A:ASP248 4.9 28.0 1.0
C B:SER26 4.9 46.0 1.0
CB A:PRO5 4.9 5.9 1.0
CA A:ARG118 5.0 36.5 1.0
CG2 A:VAL130 5.0 39.9 1.0
CD2 A:LEU146 5.0 22.8 1.0
C A:ASP137 5.0 49.5 1.0
C A:GLN126 5.0 37.6 1.0

Calcium binding site 6 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 6 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca910

b:10.5
occ:1.00
 C1 A:NAG807 0.1 62.6 0.5
O A:THR318 0.2 63.9 1.0
CE1 A:PHE221 0.5 54.2 1.0
O A:ASP213 0.6 43.1 1.0
C2 A:NAG807 0.8 62.6 0.5
CG1 B:VAL75 0.8 25.8 1.0
CD1 A:PHE221 0.9 54.2 1.0
CA B:ILE94 0.9 50.8 1.0
CB A:PRO219 1.0 52.0 1.0
CA A:ALA317 1.0 65.8 1.0
CB A:ALA317 1.1 65.8 1.0
C A:THR318 1.1 63.9 1.0
CD1 B:ILE4 1.1 13.2 1.0
C A:ASP213 1.2 43.1 1.0
CA A:PRO219 1.2 52.0 1.0
N A:PRO219 1.3 52.0 1.0
CG A:PRO219 1.3 52.0 1.0
OD2 A:ASP246 1.3 13.3 1.0
CD A:PRO219 1.3 52.0 1.0
CG1 B:ILE4 1.3 13.2 1.0
O5 A:NAG807 1.4 62.6 0.5
N B:ILE94 1.4 50.8 1.0
N A:THR318 1.5 63.9 1.0
OD1 A:ASP248 1.5 28.0 1.0
C B:ILE94 1.5 50.8 1.0
OG1 A:THR320 1.5 82.8 1.0
N A:ALA214 1.7 30.5 1.0
CZ A:PHE221 1.7 54.2 1.0
OD1 A:ASN215 1.7 28.6 1.0
C A:ALA317 1.7 65.8 1.0
C A:ALA214 1.8 30.5 1.0
C3 A:NAG807 1.8 62.6 0.5
CA A:ALA214 1.9 30.5 1.0
CB A:THR212 1.9 70.1 1.0
CG2 A:THR212 1.9 70.1 1.0
CG1 A:VAL302 2.0 50.7 1.0
CA A:THR318 2.0 63.9 1.0
CG A:PHE221 2.0 54.2 1.0
CD A:ARG118 2.0 92.0 1.0
O B:ILE94 2.0 50.8 1.0
O A:ALA214 2.0 30.5 1.0
CB B:VAL75 2.0 25.8 1.0
O A:PRO219 2.1 52.0 1.0
C A:PRO219 2.1 52.0 1.0
OD2 A:ASP213 2.1 47.1 1.0
O A:ASN217 2.1 65.3 1.0
O A:LYS224 2.1 96.8 1.0
N2 A:NAG807 2.1 62.6 0.5
OG1 A:THR212 2.2 70.1 1.0
N A:ALA317 2.2 65.8 1.0
CG A:ASP246 2.2 13.3 1.0
N B:THR95 2.2 30.5 1.0
N A:ASN215 2.2 34.3 1.0
N A:VAL319 2.2 48.1 1.0
CA A:ASN215 2.3 34.3 1.0
C4 A:NAG807 2.3 62.6 0.5
C5 A:NAG807 2.3 62.6 0.5
OD1 A:ASN304 2.3 57.1 1.0
C A:ALA218 2.3 45.7 1.0
CB A:ARG118 2.3 92.0 1.0
CB B:ILE94 2.3 98.0 1.0
CG A:ARG118 2.3 92.0 1.0
C B:GLU93 2.3 49.6 1.0
CG A:ASP248 2.3 28.0 1.0
CB A:THR320 2.4 82.8 1.0
CE2 A:PHE221 2.4 54.2 1.0
O B:GLU93 2.4 49.6 1.0
CD2 A:PHE221 2.4 54.2 1.0
CA A:ASP213 2.5 43.1 1.0
O A:SER315 2.5 47.2 1.0
O3 A:NAG807 2.5 62.6 0.5
OD1 A:ASP246 2.5 13.3 1.0
CA A:VAL319 2.5 48.1 1.0
N A:ASP213 2.6 43.1 1.0
C A:THR316 2.6 79.8 1.0
NE2 A:GLN295 2.6 77.0 1.0
O A:SER116 2.6 44.6 1.0
CG B:GLU93 2.6 78.2 1.0
CG1 B:ILE94 2.7 98.0 1.0
CG2 B:VAL75 2.7 25.8 1.0
O A:ALA254 2.7 24.4 1.0
CB B:ILE4 2.8 13.2 1.0
CB A:ASP248 2.8 28.0 1.0
O A:THR316 2.8 79.8 1.0
CG A:ASN215 2.8 28.6 1.0
O A:ALA317 2.8 65.8 1.0
CB A:ALA254 2.8 24.4 1.0
CB A:THR318 2.8 70.0 1.0
CG2 A:THR320 2.8 82.8 1.0
CA A:ARG118 2.8 36.5 1.0
O A:VAL127 2.9 46.7 1.0
N A:ARG118 2.9 36.5 1.0
CG2 B:ILE94 2.9 98.0 1.0
CA A:ALA218 2.9 45.7 1.0
CA B:VAL75 3.0 39.4 1.0
N A:ILE220 3.0 52.3 1.0
NE A:ARG118 3.0 92.0 1.0
N A:THR320 3.0 81.8 1.0
O A:ALA218 3.0 45.7 1.0
CB A:ASN215 3.1 28.6 1.0
C A:ASN217 3.1 65.3 1.0
C7 A:NAG807 3.1 62.6 0.5
CG A:ASP213 3.1 47.1 1.0
O7 A:NAG807 3.1 62.6 0.5
CA A:THR225 3.1 79.0 1.0
CB A:ASP213 3.1 47.1 1.0
CG2 B:ILE4 3.1 13.2 1.0
C A:VAL319 3.2 48.1 1.0
C A:THR212 3.2 55.3 1.0
N B:LEU76 3.2 40.1 1.0
OG1 B:THR95 3.2 36.7 1.0
C A:LYS224 3.2 96.8 1.0
NH1 A:ARG118 3.2 92.0 1.0
O B:LEU76 3.2 40.1 1.0
CB A:PHE221 3.2 54.2 1.0
CG A:ASN304 3.2 57.1 1.0
OD2 A:ASP248 3.2 28.0 1.0
ND2 A:ASN304 3.3 57.1 1.0
CA A:THR212 3.3 55.3 1.0
C A:VAL117 3.3 41.7 1.0
CB A:ALA214 3.3 30.5 1.0
CA A:VAL117 3.3 41.7 1.0
CG2 B:VAL22 3.3 37.4 1.0
CB A:ASP246 3.4 13.3 1.0
CB A:VAL302 3.4 50.7 1.0
C B:VAL75 3.4 39.4 1.0
C A:ASN215 3.4 34.3 1.0
CA A:THR320 3.4 81.8 1.0
CZ A:ARG118 3.5 92.0 1.0
CG2 A:VAL319 3.5 20.8 1.0
CA B:THR95 3.5 30.5 1.0
CA B:GLU93 3.5 49.6 1.0
OG1 A:THR318 3.5 70.0 1.0
CG2 A:THR225 3.5 68.6 1.0
CB A:THR225 3.5 68.6 1.0
C A:SER116 3.6 44.6 1.0
CD B:GLU93 3.6 78.2 1.0
CB A:ALA129 3.6 64.7 1.0
N A:ALA218 3.6 45.7 1.0
C6 A:NAG807 3.6 62.6 0.5
C A:SER315 3.6 47.2 1.0
C A:ALA254 3.6 24.4 1.0
CB B:GLU93 3.6 78.2 1.0
N A:PHE221 3.6 71.6 1.0
N A:TYR226 3.6 66.4 1.0
O4 A:NAG807 3.6 62.6 0.5
CG2 A:VAL302 3.6 50.7 1.0
CA A:ALA254 3.7 24.4 1.0
O A:TYR226 3.7 66.4 1.0
O B:ILE4 3.7 39.3 1.0
CA A:THR316 3.7 79.8 1.0
CB A:VAL319 3.7 20.8 1.0
N A:THR225 3.7 79.0 1.0
CA A:ILE220 3.7 52.3 1.0
N A:VAL117 3.8 41.7 1.0
CD A:GLN295 3.8 77.0 1.0
CA B:ILE4 3.8 39.3 1.0
CA A:CA908 3.8 10.5 1.0
N A:ASP216 3.8 48.2 1.0
C A:THR225 3.8 79.0 1.0
O A:THR212 3.9 55.3 1.0
OE2 B:GLU93 3.9 78.2 1.0
O A:ILE300 3.9 55.1 1.0
O A:VAL302 3.9 32.6 1.0
C B:ILE4 3.9 39.3 1.0
CD1 B:ILE94 3.9 98.0 1.0
ND2 A:ASN215 3.9 28.6 1.0
O A:VAL117 4.0 41.7 1.0
CG2 A:THR318 4.0 70.0 1.0
CB B:THR95 4.0 36.7 1.0
OG A:SER116 4.0 90.8 1.0
N A:ASN217 4.0 65.3 1.0
O6 A:NAG807 4.0 62.6 0.5
CA A:ASN217 4.0 65.3 1.0
O A:VAL319 4.0 48.1 1.0
N A:THR212 4.1 55.3 1.0
CA A:PHE221 4.1 71.6 1.0
C B:LEU76 4.1 40.1 1.0
CA A:ASP246 4.1 85.4 1.0
CB A:ALA218 4.1 45.7 1.0
C A:VAL127 4.1 46.7 1.0
C A:ILE220 4.1 52.3 1.0
CA A:LYS224 4.1 96.8 1.0
N A:THR316 4.1 79.8 1.0
O B:VAL75 4.1 39.4 1.0
OE1 B:GLU93 4.1 78.2 1.0
O B:PRO5 4.1 5.9 1.0
CA B:LEU76 4.2 40.1 1.0
OD1 A:ASP213 4.2 47.1 1.0
O A:ASN215 4.2 34.3 1.0
OE2 A:GLU119 4.2 8.7 1.0
C A:ARG118 4.3 36.5 1.0
CA A:ASP248 4.3 22.1 1.0
CB A:ASN217 4.3 53.4 1.0
CG1 A:VAL117 4.4 18.7 1.0
N B:VAL75 4.4 39.4 1.0
CG1 A:VAL244 4.4 58.7 1.0
OE1 A:GLN295 4.4 77.0 1.0
CB A:SER315 4.4 41.5 1.0
NE2 A:GLN126 4.4 63.6 1.0
C8 A:NAG807 4.4 62.6 0.5
CD B:PRO5 4.4 5.9 1.0
O B:GLN23 4.4 24.3 1.0
CA A:VAL302 4.4 32.6 1.0
CB A:VAL117 4.4 18.7 1.0
C A:VAL302 4.5 32.6 1.0
C1 A:NAG806 4.5 64.2 0.8
CG1 B:VAL22 4.5 37.4 1.0
OD1 A:ASP216 4.5 10.1 1.0
CG2 A:THR227 4.5 92.2 1.0
CA A:SER315 4.5 47.2 1.0
CB B:VAL22 4.5 37.4 1.0
N A:VAL302 4.5 32.6 1.0
CG A:GLN295 4.5 77.0 1.0
N A:GLU119 4.5 44.1 1.0
N A:ASP248 4.5 22.1 1.0
NH2 A:ARG118 4.6 92.0 1.0
O A:MET128 4.6 47.7 1.0
CG2 A:VAL297 4.6 77.0 1.0
N B:PRO5 4.6 5.9 1.0
O A:PRO223 4.7 64.6 1.0
CB A:ASN304 4.7 57.1 1.0
N A:ASP1 4.7 19.4 1.0
C A:MET128 4.7 47.7 1.0
CE1 A:PHE308 4.7 0.0 1.0
N B:GLU93 4.7 49.6 1.0
CD A:LYS224 4.7 100.0 1.0
CA A:MET128 4.7 47.7 1.0
C A:THR320 4.7 81.8 1.0
C A:TYR226 4.7 66.4 1.0
C B:THR95 4.7 30.5 1.0
CA A:SER116 4.8 44.6 1.0
CD2 A:TYR226 4.8 68.3 1.0
O A:LEU298 4.8 69.5 1.0
CB A:SER116 4.8 90.8 1.0
CE A:LYS224 4.8 100.0 1.0
N A:TRP255 4.8 50.6 1.0
CA A:VAL127 4.9 46.7 1.0
CB A:THR316 4.9 60.3 1.0
CB A:VAL244 4.9 58.7 1.0
CA A:TYR226 4.9 66.4 1.0
O B:THR95 4.9 30.5 1.0
CG1 A:VAL319 4.9 20.8 1.0
CG A:LYS224 4.9 100.0 1.0
N A:SER315 4.9 47.2 1.0
O A:GLN126 4.9 37.6 1.0
CD1 B:ILE7 4.9 23.8 1.0
OG1 A:THR225 4.9 68.6 1.0
O B:MET92 4.9 50.6 1.0
N A:MET128 4.9 47.7 1.0
NZ A:LYS224 4.9 100.0 1.0
CA A:ALA129 4.9 64.7 1.0
N B:ILE4 5.0 39.3 1.0
N A:ALA129 5.0 64.7 1.0
O B:TYR74 5.0 29.1 1.0
N A:ASP246 5.0 85.4 1.0
CB A:ASP1 5.0 0.0 1.0

Calcium binding site 7 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 7 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca911

b:37.4
occ:1.00
 C A:GLY287 0.5 92.6 1.0
OE1 A:GLN363 0.6 0.0 1.0
N A:LEU288 0.7 0.0 1.0
C A:LEU288 1.0 0.0 1.0
O A:PRO359 1.0 92.7 1.0
C A:PRO359 1.1 92.7 1.0
N A:ASP360 1.1 65.5 1.0
ND2 A:ASN270 1.2 76.3 1.0
C1 A:NDG903 1.2 56.2 0.5
O A:LEU288 1.2 0.0 1.0
CA A:LEU288 1.3 0.0 1.0
N A:ALA285 1.4 99.6 1.0
CA A:ALA285 1.4 99.6 1.0
O A:NDG903 1.4 56.2 0.5
OE2 A:GLU291 1.4 52.9 1.0
CA A:ASP289 1.5 0.0 1.0
O A:GLY287 1.5 92.6 1.0
N A:GLY287 1.5 92.6 1.0
CA A:GLY287 1.5 92.6 1.0
OE2 A:GLU232 1.6 49.7 1.0
C A:THR284 1.6 66.8 1.0
C5 A:NDG903 1.6 56.2 0.5
N A:ASP289 1.6 0.0 1.0
CD A:GLN363 1.6 0.0 1.0
C A:ALA285 1.7 99.6 1.0
CA A:ASP360 1.8 65.5 1.0
C A:ASP289 1.8 0.0 1.0
O A:THR284 1.8 66.8 1.0
CG A:GLN363 1.8 0.0 1.0
CD A:GLU232 2.0 49.7 1.0
N A:LYS286 2.0 0.0 1.0
C2 A:NDG903 2.1 56.2 0.5
C A:LYS286 2.1 0.0 1.0
O A:ASP289 2.1 0.0 1.0
CD A:GLU291 2.1 52.9 1.0
C3 A:NDG903 2.2 56.2 0.5
C A:ASP360 2.2 65.5 1.0
C4 A:NDG903 2.2 56.2 0.5
CG A:GLU232 2.2 49.7 1.0
OD2 A:ASP289 2.2 99.7 1.0
O A:ALA285 2.3 99.6 1.0
CA A:PRO359 2.4 92.7 1.0
CG A:ASN270 2.4 76.3 1.0
O A:ASP358 2.4 99.7 1.0
CB A:ASN270 2.4 76.3 1.0
O4 A:NDG903 2.4 56.2 0.5
NE2 A:GLN363 2.5 0.0 1.0
O A:GLU232 2.5 50.5 1.0
CB A:LEU288 2.5 56.4 1.0
OE1 A:GLU291 2.5 52.9 1.0
O A:ASP360 2.5 65.5 1.0
O A:LYS286 2.6 0.0 1.0
CB A:GLN363 2.6 0.0 1.0
CB A:ASP289 2.6 99.7 1.0
CB A:ALA285 2.7 99.6 1.0
CA A:LYS286 2.7 0.0 1.0
O7 A:NDG903 2.7 56.2 0.5
N A:PHE290 2.7 52.9 1.0
N A:LYS361 2.7 71.2 1.0
OE1 A:GLU232 2.7 49.7 1.0
OD2 B:ASP137 2.7 70.9 1.0
CB A:PRO359 2.8 92.7 1.0
OD1 B:ASP137 2.9 70.9 1.0
OE2 A:GLU328 2.9 0.0 1.0
CG B:ASP137 2.9 70.9 1.0
C6 A:NDG903 3.0 56.2 0.5
N2 A:NDG903 3.0 56.2 0.5
CB A:THR284 3.0 59.5 1.0
CG A:ASP289 3.0 99.7 1.0
CA A:THR284 3.0 66.8 1.0
CB A:ASP360 3.1 90.8 1.0
CG A:LEU288 3.1 56.4 1.0
CA A:PHE290 3.3 52.9 1.0
CB A:GLU232 3.3 49.7 1.0
CA A:CA915 3.3 70.2 1.0
N A:PRO359 3.3 92.7 1.0
O3 A:NAG803 3.4 63.9 0.5
C A:ASP358 3.4 99.7 1.0
CG A:GLU291 3.4 52.9 1.0
C7 A:NDG903 3.4 56.2 0.5
CG2 B:ILE139 3.4 51.9 1.0
O3 A:NDG903 3.4 56.2 0.5
C A:GLU232 3.5 50.5 1.0
CG A:ASP360 3.5 90.8 1.0
OD1 A:ASN270 3.5 76.3 1.0
OE1 A:GLU328 3.5 0.0 1.0
CB B:ASP140 3.5 95.0 1.0
OD2 A:ASP360 3.5 90.8 1.0
OD2 B:ASP140 3.6 95.0 1.0
CD1 A:ILE235 3.6 54.3 1.0
CD A:GLU328 3.6 0.0 1.0
CG1 A:ILE235 3.7 54.3 1.0
CA A:LYS361 3.7 71.2 1.0
CA A:GLU232 3.7 50.5 1.0
CB B:ASP137 3.7 70.9 1.0
OD1 A:ASP358 3.7 96.2 1.0
CG2 A:THR284 3.8 59.5 1.0
OG1 A:THR272 3.8 32.0 1.0
CG A:PRO359 3.8 92.7 1.0
CA A:ASN270 3.9 66.0 1.0
CD1 A:LEU288 3.9 56.4 1.0
CG B:ASP140 3.9 95.0 1.0
CB A:GLU291 3.9 52.9 1.0
OD1 A:ASP360 3.9 90.8 1.0
CG2 B:ILE99 4.0 36.3 1.0
O A:PHE268 4.0 41.9 1.0
O6 A:NDG903 4.0 56.2 0.5
OD1 A:ASN233 4.0 0.0 1.0
CA A:GLN363 4.0 0.0 1.0
N A:THR284 4.1 66.8 1.0
CB A:LYS286 4.1 32.5 1.0
OG1 A:THR284 4.1 59.5 1.0
N A:ASN270 4.1 66.0 1.0
NH1 B:ARG68 4.1 39.4 1.0
OG1 A:THR283 4.1 65.5 1.0
CB A:PHE290 4.2 99.0 1.0
C A:PHE290 4.2 52.9 1.0
O A:ILE235 4.2 80.0 1.0
OD1 A:ASP289 4.3 99.7 1.0
CA A:GLY236 4.3 79.4 1.0
C3 A:NAG803 4.3 63.9 0.5
N A:GLU291 4.3 99.8 1.0
CD2 A:LEU288 4.4 56.4 1.0
N A:ASN233 4.4 0.0 1.0
CD1 A:PHE290 4.4 99.0 1.0
CD A:PRO359 4.4 92.7 1.0
CA B:ASP137 4.5 49.5 1.0
CB B:ILE139 4.5 51.9 1.0
CA A:ASP358 4.6 99.7 1.0
CG A:LYS286 4.6 32.5 1.0
N A:GLN363 4.6 0.0 1.0
NH2 B:ARG68 4.6 39.4 1.0
C A:PHE268 4.6 41.9 1.0
CB A:ASP358 4.6 96.2 1.0
CB A:LYS361 4.6 99.8 1.0
C A:ASN270 4.6 66.0 1.0
CB A:PHE268 4.7 68.6 1.0
O4 A:NAG803 4.7 63.9 0.5
C A:THR283 4.7 68.4 1.0
C A:PHE269 4.7 78.2 1.0
CG A:ASN233 4.7 0.0 1.0
O A:THR283 4.7 68.4 1.0
CG A:ASP358 4.7 96.2 1.0
C8 A:NDG903 4.8 56.2 0.5
CB A:ASN233 4.8 0.0 1.0
ND2 B:ASN138 4.8 77.1 1.0
C A:LYS361 4.8 71.2 1.0
C A:ILE235 4.8 80.0 1.0
CG A:PHE290 4.8 99.0 1.0
CA B:ASP140 4.8 54.0 1.0
CZ B:ARG68 4.8 39.4 1.0
CG2 A:THR272 4.8 32.0 1.0
CA A:ASN233 4.9 0.0 1.0
N B:ASP140 4.9 54.0 1.0
O A:ASN270 4.9 66.0 1.0
N A:GLN362 4.9 0.0 1.0
CA A:GLU291 4.9 99.8 1.0
CA A:PHE269 4.9 78.2 1.0
N A:GLY236 4.9 79.4 1.0
N A:PHE269 5.0 78.2 1.0
C A:GLN363 5.0 0.0 1.0
N A:ASP358 5.0 99.7 1.0
O A:GLN363 5.0 0.0 1.0
OD2 A:ASP325 5.0 64.5 1.0
O A:VAL326 5.0 0.0 1.0

Calcium binding site 8 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 8 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca912

b:90.9
occ:1.00
 C A:ASN233 0.2 0.0 1.0
N A:ILE235 0.5 80.0 1.0
N A:GLU234 0.7 0.0 1.0
NE2 A:GLN365 0.8 0.0 1.0
N A:GLU328 0.8 0.0 1.0
CA A:ILE235 0.9 80.0 1.0
C A:ASN327 1.0 0.0 1.0
CE A:LYS366 1.1 78.0 1.0
O A:ASN233 1.1 0.0 1.0
CG1 B:ILE139 1.2 51.9 1.0
C A:GLU234 1.2 0.0 1.0
CG A:LYS366 1.3 78.0 1.0
CB A:LYS366 1.3 78.0 1.0
CD A:LYS366 1.4 78.0 1.0
CA A:LYS366 1.4 87.4 1.0
CD1 B:ILE139 1.4 51.9 1.0
OD1 B:ASP140 1.5 95.0 1.0
CD A:GLN365 1.5 0.0 1.0
CA A:GLU328 1.5 0.0 1.0
O A:GLN365 1.5 0.0 1.0
CA A:GLU234 1.6 0.0 1.0
O A:ASN327 1.6 0.0 1.0
CA A:ASN233 1.6 0.0 1.0
C A:ILE235 1.7 80.0 1.0
O B:ILE139 1.7 97.2 1.0
OE1 A:GLN365 1.7 0.0 1.0
N A:GLY236 1.7 79.4 1.0
OD1 A:ASN327 1.8 0.0 1.0
O A:GLY236 2.0 79.4 1.0
O A:GLU328 2.0 0.0 1.0
CB A:ASN233 2.0 0.0 1.0
OD1 A:ASP414 2.1 82.2 1.0
CA A:GLY236 2.2 79.4 1.0
CG A:GLU328 2.2 0.0 1.0
C A:GLU328 2.3 0.0 1.0
CB A:ILE235 2.3 54.3 1.0
O A:GLU234 2.3 0.0 1.0
OD2 A:ASP358 2.3 96.2 1.0
C A:GLN365 2.4 0.0 1.0
NZ A:LYS366 2.4 78.0 1.0
CG2 A:ILE235 2.4 54.3 1.0
CA A:ASN327 2.4 0.0 1.0
N A:LYS366 2.5 87.4 1.0
C A:GLY236 2.5 79.4 1.0
C A:LYS366 2.5 87.4 1.0
CG B:ASP140 2.5 95.0 1.0
CB B:ILE139 2.5 51.9 1.0
OD2 A:ASP414 2.5 82.2 1.0
OD1 A:ASP360 2.5 90.8 1.0
CG A:ASP414 2.6 82.2 1.0
CB A:GLU328 2.6 0.0 1.0
N A:ASN233 2.6 0.0 1.0
C B:ILE139 2.6 97.2 1.0
CB A:GLU234 2.6 0.0 1.0
CG A:GLN365 2.6 0.0 1.0
O A:ILE235 2.7 80.0 1.0
N A:LEU367 2.7 89.4 1.0
CG1 A:VAL326 2.7 68.3 1.0
CG A:ASN327 2.8 0.0 1.0
CG A:ASP358 2.9 96.2 1.0
OD1 A:ASP358 2.9 96.2 1.0
CG2 A:VAL326 2.9 68.3 1.0
OE1 A:GLU328 3.0 0.0 1.0
CD A:GLU328 3.0 0.0 1.0
CA B:ILE139 3.1 97.2 1.0
CG A:ASN233 3.1 0.0 1.0
N A:ASN327 3.1 0.0 1.0
ND2 A:ASN233 3.1 0.0 1.0
OD2 B:ASP140 3.2 95.0 1.0
O6 A:NDG903 3.2 56.2 0.5
CG1 A:ILE235 3.2 54.3 1.0
CG2 B:ILE139 3.2 51.9 1.0
CB A:ASN327 3.3 0.0 1.0
CB A:GLN365 3.3 0.0 1.0
CA B:ASP140 3.3 54.0 1.0
O A:LYS366 3.4 87.4 1.0
CB B:ASP140 3.4 95.0 1.0
N A:ALA329 3.4 93.5 1.0
CB A:VAL326 3.4 68.3 1.0
C6 A:NDG903 3.4 56.2 0.5
CG A:ASP360 3.5 90.8 1.0
OD2 A:ASP360 3.5 90.8 1.0
C A:VAL326 3.5 0.0 1.0
N B:ASP140 3.6 54.0 1.0
O A:VAL326 3.6 0.0 1.0
CA A:GLN365 3.6 0.0 1.0
CB A:ASP414 3.6 82.2 1.0
ND2 A:ASN327 3.7 0.0 1.0
N A:PHE237 3.8 58.3 1.0
CG A:GLU234 3.8 0.0 1.0
CB A:ASP358 3.8 96.2 1.0
CD2 A:LEU367 3.9 55.1 1.0
CG A:LEU367 3.9 55.1 1.0
O A:ASP415 3.9 66.8 1.0
C A:GLU232 3.9 50.5 1.0
CA A:LEU367 4.1 89.4 1.0
OE2 A:GLU328 4.2 0.0 1.0
CB A:LEU367 4.2 55.1 1.0
OD1 A:ASN233 4.2 0.0 1.0
CA A:ASP414 4.3 82.6 1.0
O A:GLU232 4.3 50.5 1.0
CA A:VAL326 4.3 0.0 1.0
N A:GLN365 4.3 0.0 1.0
NE2 A:GLN363 4.3 0.0 1.0
CA A:ALA329 4.4 93.5 1.0
CD1 A:ILE235 4.4 54.3 1.0
O A:ASP384 4.4 76.5 1.0
N B:ILE139 4.5 97.2 1.0
O B:ASP140 4.6 54.0 1.0
C B:ASP140 4.6 54.0 1.0
CA A:PHE237 4.6 58.3 1.0
CG A:PRO330 4.6 43.9 1.0
CG A:PRO359 4.6 92.7 1.0
O A:LEU367 4.6 89.4 1.0
CB A:PHE237 4.6 87.3 1.0
N A:ASP415 4.7 66.8 1.0
O A:VAL419 4.7 0.0 1.0
CB A:ASP360 4.7 90.8 1.0
C A:ASP414 4.8 82.6 1.0
CB A:GLU232 4.8 49.7 1.0
C A:ALA329 4.8 93.5 1.0
CA A:CA915 4.9 70.2 1.0
C5 A:NDG903 4.9 56.2 0.5
OE2 A:GLU232 5.0 49.7 1.0
O B:ASN138 5.0 29.0 1.0
CD A:GLU234 5.0 0.0 1.0

Calcium binding site 9 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 9 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca913

b:34.6
occ:1.00
 N B:ALA214 0.2 30.5 1.0
CB B:GLU119 0.7 8.7 1.0
O A:VAL401 0.8 83.5 1.0
CG B:GLU119 0.8 8.7 1.0
N B:PRO253 0.9 55.7 1.0
OD1 A:ASP435 1.0 64.9 1.0
C B:THR252 1.1 38.9 1.0
CB B:LEU179 1.2 33.9 1.0
CA A:GLU397 1.2 0.0 1.0
CA B:GLU119 1.2 44.1 1.0
N A:GLU397 1.3 0.0 1.0
CG2 B:THR252 1.3 81.4 1.0
C A:GLU397 1.4 0.0 1.0
C B:ASP213 1.4 43.1 1.0
N A:SER398 1.4 0.0 1.0
C B:GLU119 1.5 44.1 1.0
OD2 B:ASP213 1.6 47.1 1.0
O B:GLU119 1.6 44.1 1.0
CA B:ALA214 1.7 30.5 1.0
CD B:PRO253 1.7 55.7 1.0
CG B:LEU179 1.7 33.9 1.0
CA B:THR252 1.8 38.9 1.0
CG A:ASP435 1.9 64.9 1.0
CB A:GLU397 1.9 75.5 1.0
CD B:GLU119 1.9 8.7 1.0
O A:ARG396 1.9 89.7 1.0
CB B:THR252 1.9 81.4 1.0
C A:ARG396 1.9 89.7 1.0
N B:THR177 1.9 44.7 1.0
C A:VAL401 1.9 83.5 1.0
CA B:GLY176 2.0 25.3 1.0
N B:LEU179 2.0 22.6 1.0
OE1 A:GLU397 2.0 75.5 1.0
OE2 B:GLU119 2.0 8.7 1.0
O B:THR252 2.0 38.9 1.0
CG A:LYS402 2.0 100.0 1.0
CA A:LYS402 2.0 0.0 1.0
CA B:LEU179 2.0 22.6 1.0
CA B:PRO253 2.1 55.7 1.0
OD2 A:ASP395 2.1 88.0 1.0
CG B:ASP213 2.2 47.1 1.0
OE2 A:GLU343 2.2 72.9 1.0
CB B:ALA214 2.2 30.5 1.0
O B:ASP213 2.2 43.1 1.0
C B:GLY176 2.2 25.3 1.0
CB A:LYS402 2.3 100.0 1.0
CA B:ASP213 2.3 43.1 1.0
N B:ALA254 2.4 24.4 1.0
O B:LEU179 2.4 22.6 1.0
CA A:SER398 2.4 0.0 1.0
N B:GLU119 2.4 44.1 1.0
CG A:ASP395 2.4 88.0 1.0
OD2 A:ASP435 2.5 64.9 1.0
C B:ALA214 2.5 30.5 1.0
CB B:ASP213 2.5 47.1 1.0
N A:LYS402 2.5 0.0 1.0
O A:GLU397 2.5 0.0 1.0
CA B:THR177 2.5 44.7 1.0
OD1 A:ASP395 2.5 88.0 1.0
O A:ASP395 2.6 76.5 1.0
N B:GLY120 2.6 54.5 1.0
N B:GLY178 2.6 67.1 1.0
C B:LEU179 2.6 22.6 1.0
CG B:PRO253 2.7 55.7 1.0
CB B:ALA254 2.7 24.4 1.0
O B:ALA214 2.7 30.5 1.0
CD A:LYS402 2.7 100.0 1.0
C A:ASP395 2.7 76.5 1.0
CD1 B:LEU179 2.7 33.9 1.0
C B:THR177 2.8 44.7 1.0
CD A:GLU397 2.8 75.5 1.0
CD2 B:LEU162 2.8 40.1 1.0
CB A:VAL401 2.8 92.7 1.0
CD1 B:ILE159 2.8 54.5 1.0
OE1 A:GLU343 2.8 72.9 1.0
CG A:GLU397 2.8 75.5 1.0
CB A:ASP435 2.8 64.9 1.0
C B:PRO253 2.9 55.7 1.0
CD A:GLU343 2.9 72.9 1.0
CB B:PRO253 3.0 55.7 1.0
N A:ARG396 3.0 89.7 1.0
O B:GLY176 3.0 25.3 1.0
N B:GLY176 3.0 25.3 1.0
CD2 B:LEU179 3.0 33.9 1.0
OE1 B:GLU119 3.0 8.7 1.0
CA A:VAL401 3.0 83.5 1.0
O B:ASN161 3.0 39.0 1.0
C A:LYS402 3.1 0.0 1.0
C A:SER398 3.1 0.0 1.0
CA A:ARG396 3.1 89.7 1.0
OG1 B:THR252 3.1 81.4 1.0
C B:GLY178 3.1 67.1 1.0
N B:THR252 3.1 38.9 1.0
CB A:ASP395 3.2 88.0 1.0
O A:LYS402 3.2 0.0 1.0
O B:GLY251 3.3 38.5 1.0
CA B:ALA254 3.3 24.4 1.0
OD1 B:ASP213 3.3 47.1 1.0
CA A:ASP395 3.3 76.5 1.0
O B:THR177 3.4 44.7 1.0
OD1 B:ASN161 3.4 20.8 1.0
N A:VAL401 3.4 83.5 1.0
CA B:GLY178 3.4 67.1 1.0
O A:SER398 3.5 0.0 1.0
N B:ASP213 3.5 43.1 1.0
OE2 B:GLU306 3.5 91.8 1.0
O A:TYR400 3.5 0.0 1.0
O B:THR212 3.5 55.3 1.0
C B:ARG118 3.5 36.5 1.0
N A:GLU399 3.5 97.0 1.0
CA B:CA908 3.6 10.5 1.0
CG1 A:VAL401 3.6 92.7 1.0
N B:ASN215 3.6 34.3 1.0
CG2 A:VAL401 3.6 92.7 1.0
CB B:ASN161 3.6 20.8 1.0
CB A:SER398 3.6 0.0 1.0
CA A:CA916 3.7 85.4 1.0
OD1 B:ASP216 3.7 10.1 1.0
CA A:ASP435 3.7 99.6 1.0
CG B:ASN161 3.7 20.8 1.0
C B:GLY251 3.7 38.5 1.0
CB B:GLN256 3.7 100.0 1.0
N B:ASP180 3.7 28.1 1.0
C A:TYR400 3.8 0.0 1.0
CA B:GLY120 3.8 54.5 1.0
C B:ASN161 3.8 39.0 1.0
N B:TRP255 3.8 50.6 1.0
O B:ARG118 3.8 36.5 1.0
CG B:ARG118 3.8 92.0 1.0
O B:MET249 3.8 41.8 1.0
CA B:LEU162 3.9 5.0 1.0
CG B:GLN256 3.9 100.0 1.0
C B:ALA254 3.9 24.4 1.0
OE2 A:GLU397 4.0 75.5 1.0
O A:GLU399 4.0 97.0 1.0
CD1 B:LEU174 4.0 39.9 1.0
C B:THR212 4.0 55.3 1.0
OD2 B:ASP216 4.0 10.1 1.0
CG B:LEU162 4.1 40.1 1.0
CG1 B:ILE159 4.1 54.5 1.0
O B:PRO253 4.1 55.7 1.0
CB B:THR177 4.1 34.9 1.0
CB A:ARG396 4.1 100.0 1.0
N A:ASN403 4.1 0.0 1.0
CE A:LYS402 4.2 100.0 1.0
CG2 B:ILE211 4.2 33.3 1.0
CG2 B:ILE175 4.2 20.3 1.0
C A:GLU399 4.2 97.0 1.0
O B:GLY178 4.2 67.1 1.0
C B:ILE175 4.2 22.2 1.0
CA B:ASP180 4.3 28.1 1.0
CB B:ASP248 4.3 28.0 1.0
CA A:GLU399 4.3 97.0 1.0
N B:LEU162 4.3 5.0 1.0
CB B:LEU162 4.3 40.1 1.0
CG B:PRO275 4.3 57.9 1.0
CG A:GLU343 4.3 72.9 1.0
CD B:ARG118 4.4 92.0 1.0
CG B:ASP216 4.4 10.1 1.0
CD2 B:LEU174 4.4 39.9 1.0
CA B:ASN161 4.4 39.0 1.0
OE1 B:GLU182 4.4 17.1 1.0
N B:MET249 4.4 41.8 1.0
N B:ARG181 4.5 27.8 1.0
N B:GLN256 4.5 30.5 1.0
N A:ASP435 4.5 99.6 1.0
ND2 B:ASN161 4.5 20.8 1.0
N A:TYR400 4.5 0.0 1.0
OG A:SER398 4.6 0.0 1.0
CA B:ASN215 4.6 34.3 1.0
O B:ILE175 4.6 22.2 1.0
CB B:MET249 4.6 52.2 1.0
O B:LEU162 4.6 5.0 1.0
CA B:ARG118 4.6 36.5 1.0
CB B:ARG181 4.6 47.9 1.0
OG1 B:THR177 4.7 34.9 1.0
NZ A:LYS402 4.7 100.0 1.0
CD1 B:LEU162 4.7 40.1 1.0
N A:ASP395 4.7 76.5 1.0
C B:LEU162 4.7 5.0 1.0
CD B:GLU306 4.7 91.8 1.0
CB B:TRP255 4.7 53.1 1.0
CG B:LEU174 4.7 39.9 1.0
O B:ALA254 4.8 24.4 1.0
CG A:ARG396 4.8 100.0 1.0
CG B:ASP248 4.8 28.0 1.0
C B:GLY120 4.8 54.5 1.0
CA B:TRP255 4.8 50.6 1.0
O A:ASN403 4.8 0.0 1.0
CG2 B:THR177 4.8 34.9 1.0
N B:VAL121 4.8 44.7 1.0
CA B:GLN256 4.8 30.5 1.0
C A:ASP435 4.8 99.6 1.0
CA A:TYR400 4.9 0.0 1.0
O B:PRO250 4.9 34.0 1.0
OD2 B:ASP248 4.9 28.0 1.0
CB B:ARG118 4.9 92.0 1.0
C B:ASP180 4.9 28.1 1.0
C B:MET249 4.9 41.8 1.0
CA B:MET249 4.9 41.8 1.0
CD B:GLN256 4.9 100.0 1.0
N B:ASN161 5.0 39.0 1.0

Calcium binding site 10 out of 48 in 1q5c

Go back to Calcium Binding Sites List in 1q5c
Calcium binding site 10 out of 48 in the S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of S-S-Lambda-Shaped Trans and Cis Interactions of Cadherins Model Based on Fitting C-Cadherin (1L3W) to 3D Map of Desmosomes Obtained By Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca914

b:69.9
occ:1.00
 N B:ASN278 0.5 54.3 1.0
CA B:LEU247 0.6 48.5 1.0
CB B:LEU247 0.7 11.6 1.0
O B:ASP246 0.8 85.4 1.0
CG B:ASP274 0.9 0.0 1.0
OD1 B:ASP274 1.0 0.0 1.0
O B:ASP274 1.1 85.4 1.0
CB A:ASN518 1.1 88.3 1.0
ND2 B:ASN278 1.2 62.2 1.0
CA B:ASN278 1.3 54.3 1.0
CB B:ASP274 1.3 0.0 1.0
CA A:ASN518 1.5 0.0 1.0
C B:ASP246 1.6 85.4 1.0
N B:LEU247 1.6 48.5 1.0
C B:SER277 1.6 84.8 1.0
N A:ASP463 1.7 0.0 1.0
OD1 A:ASP461 1.7 0.0 1.0
C B:LEU247 1.7 48.5 1.0
CG A:ASN518 1.8 88.3 1.0
O A:ASP463 1.8 0.0 1.0
NE1 B:TRP255 1.8 53.1 1.0
N A:ASN518 1.8 0.0 1.0
OD1 A:ASN518 1.8 88.3 1.0
C B:ASP274 2.0 85.4 1.0
OD2 B:ASP180 2.0 24.0 1.0
CD B:LYS183 2.0 56.8 1.0
ND2 A:ASN434 2.0 68.5 1.0
CG B:LEU247 2.1 11.6 1.0
OD2 B:ASP274 2.1 0.0 1.0
CG B:ASN278 2.1 62.2 1.0
OD2 A:ASP515 2.1 0.0 1.0
CB B:ASN278 2.1 62.2 1.0
O A:ASP461 2.1 91.5 1.0
O B:LEU247 2.2 48.5 1.0
CB A:ASP463 2.2 90.9 1.0
CA A:ASP463 2.2 0.0 1.0
OD1 A:ASP463 2.2 90.9 1.0
N B:GLU276 2.2 78.0 1.0
CE2 B:TRP255 2.3 53.1 1.0
CG B:GLU276 2.3 78.3 1.0
CB B:GLU182 2.3 17.1 1.0
OD1 A:ASN434 2.3 68.5 1.0
CG A:ASP461 2.4 0.0 1.0
CZ2 B:TRP255 2.4 53.1 1.0
O B:PRO158 2.4 43.1 1.0
CD1 B:TRP255 2.4 53.1 1.0
CA B:ASP274 2.4 85.4 1.0
CE B:LYS183 2.4 56.8 1.0
C A:ALA462 2.4 0.0 1.0
C A:ASP463 2.4 0.0 1.0
N B:SER277 2.4 84.8 1.0
O A:ASN436 2.5 56.8 1.0
O B:SER277 2.5 84.8 1.0
CG B:LYS183 2.5 56.8 1.0
NZ B:LYS183 2.5 56.8 1.0
C A:ASP461 2.5 91.5 1.0
OE2 B:GLU276 2.5 78.3 1.0
CA B:SER277 2.6 84.8 1.0
C B:ASN278 2.6 54.3 1.0
CD2 B:LEU247 2.6 11.6 1.0
OD1 A:ASP515 2.7 0.0 1.0
CD B:GLU276 2.7 78.3 1.0
CB A:ASP461 2.7 0.0 1.0
CG A:ASN434 2.7 68.5 1.0
CG A:ASP463 2.7 90.9 1.0
ND2 A:ASN518 2.8 88.3 1.0
N A:ALA462 2.8 0.0 1.0
N B:ASP248 2.8 22.1 1.0
CG2 A:THR468 2.8 0.0 1.0
C A:ASN518 2.8 0.0 1.0
N B:ASP246 2.8 85.4 1.0
CH2 B:TRP255 2.8 53.1 1.0
CA B:ASP246 2.8 85.4 1.0
CG B:GLU182 2.9 17.1 1.0
N B:GLN279 2.9 65.4 1.0
CB B:PRO158 2.9 43.1 1.0
CG A:ASP515 2.9 0.0 1.0
N B:PRO275 3.0 57.9 1.0
CB B:GLU276 3.0 78.3 1.0
CD1 B:LEU247 3.0 11.6 1.0
O A:ASN467 3.0 44.5 1.0
OD1 B:ASN278 3.0 62.2 1.0
CA A:ALA462 3.0 0.0 1.0
CA B:GLU276 3.0 78.0 1.0
CA B:PRO158 3.1 43.1 1.0
O A:ALA462 3.1 0.0 1.0
C B:GLU276 3.1 78.0 1.0
OD1 B:ASN217 3.1 53.4 1.0
OD2 A:ASP461 3.1 0.0 1.0
C B:PRO158 3.1 43.1 1.0
C A:GLN517 3.1 0.0 1.0
CD2 B:TRP255 3.1 53.1 1.0
CB B:LYS183 3.1 56.8 1.0
CG B:ASP180 3.2 24.0 1.0
CB B:ASP246 3.2 13.3 1.0
C B:PRO275 3.2 57.9 1.0
CG B:PRO158 3.3 43.1 1.0
CA A:ASP461 3.3 91.5 1.0
CG B:TRP255 3.4 53.1 1.0
N B:ASP274 3.4 85.4 1.0
CZ3 B:TRP255 3.4 53.1 1.0
O A:ASN518 3.4 0.0 1.0
CA B:PRO275 3.4 57.9 1.0
CB A:GLN517 3.5 90.5 1.0
CE2 B:PHE184 3.5 49.3 1.0
O B:ASN278 3.6 54.3 1.0
CG B:ASN217 3.6 53.4 1.0
C A:ASN436 3.6 56.8 1.0
CG2 B:ILE159 3.6 54.5 1.0
CA B:GLU182 3.6 40.6 1.0
OE1 B:GLU276 3.6 78.3 1.0
C B:GLU182 3.7 40.6 1.0
C B:THR245 3.7 71.2 1.0
N A:ASN519 3.7 0.0 1.0
NH2 B:ARG241 3.7 47.5 1.0
N A:ILE464 3.7 88.0 1.0
CE3 B:TRP255 3.8 53.1 1.0
O B:TRP255 3.8 50.6 1.0
N B:LYS183 3.8 45.1 1.0
ND2 B:ASN217 3.8 53.4 1.0
O B:ASP248 3.8 22.1 1.0
O A:GLN517 3.8 0.0 1.0
OD1 B:ASP246 3.8 13.3 1.0
CD B:GLU182 3.9 17.1 1.0
OE2 B:GLU182 3.9 17.1 1.0
OD2 A:ASP463 3.9 90.9 1.0
OD1 B:ASP180 3.9 24.0 1.0
CA A:GLY437 3.9 93.1 1.0
O B:GLU276 3.9 78.0 1.0
CB B:ASP180 3.9 24.0 1.0
CB B:SER277 3.9 97.7 1.0
C A:ASN467 4.0 44.5 1.0
CA A:GLN517 4.0 0.0 1.0
CA B:ASP248 4.0 22.1 1.0
O B:GLU182 4.1 40.6 1.0
CB A:THR468 4.1 0.0 1.0
CA B:LYS183 4.1 45.1 1.0
N A:GLY437 4.2 93.1 1.0
CD B:PRO275 4.2 57.9 1.0
CG B:ASP246 4.2 13.3 1.0
CB A:ASN434 4.2 68.5 1.0
N A:GLN517 4.2 0.0 1.0
CA B:THR245 4.2 71.2 1.0
N B:ILE159 4.2 86.8 1.0
CA B:GLN279 4.3 65.4 1.0
CZ B:PHE184 4.3 49.3 1.0
CG A:GLN517 4.3 90.5 1.0
N B:PRO158 4.4 43.1 1.0
O B:THR245 4.4 71.2 1.0
CB B:ASN217 4.4 53.4 1.0
O A:ASP435 4.4 99.6 1.0
O B:PRO275 4.4 57.9 1.0
CB A:ALA462 4.4 0.0 1.0
CB A:ASP515 4.4 0.0 1.0
N A:ASP461 4.4 91.5 1.0
OG B:SER277 4.4 97.7 1.0
O B:GLN279 4.5 65.4 1.0
CD2 B:PHE184 4.5 49.3 1.0
CB A:ASN467 4.5 73.4 1.0
C B:ASP248 4.5 22.1 1.0
CA A:ILE464 4.5 88.0 1.0
CB A:ALA516 4.5 99.7 1.0
CD B:PRO158 4.5 43.1 1.0
CA B:ILE159 4.5 86.8 1.0
C B:THR273 4.5 98.6 1.0
N B:GLU182 4.6 40.6 1.0
CA A:THR468 4.6 0.0 1.0
CB B:TRP255 4.6 53.1 1.0
O A:ASN434 4.7 0.0 1.0
O B:VAL244 4.7 0.0 1.0
CB B:ILE159 4.7 54.5 1.0
C A:ASN434 4.7 0.0 1.0
CA B:CA909 4.7 12.9 1.0
CB B:GLN279 4.7 47.4 1.0
N A:THR468 4.7 0.0 1.0
CA A:ASN434 4.7 0.0 1.0
CA A:ASN436 4.7 56.8 1.0
N A:ALA516 4.7 99.7 1.0
CD1 B:ILE281 4.7 71.3 1.0
CD A:PRO438 4.8 75.9 1.0
OE2 B:GLU157 4.8 79.2 1.0
CZ B:ARG241 4.8 47.5 1.0
O B:THR273 4.8 98.6 1.0
C A:ASP435 4.8 99.6 1.0
N A:ASN436 4.8 56.8 1.0
C B:TRP255 4.9 50.6 1.0
CB A:ASN519 4.9 100.0 1.0
CA A:ASN467 4.9 44.5 1.0
CG2 B:VAL244 4.9 58.7 1.0
CG B:GLN279 4.9 47.4 1.0
CB B:THR245 4.9 93.2 1.0
C A:GLY437 4.9 93.1 1.0
CA B:TRP255 4.9 50.6 1.0
C B:GLN279 4.9 65.4 1.0
CB B:PRO275 4.9 57.9 1.0
C A:ALA516 5.0 99.7 1.0
OD2 B:ASP248 5.0 28.0 1.0

Reference:

W.He, P.Cowin, D.L.Stokes. Untangling Desmosomal Knots with Electron Tomography Science V. 302 109 2003.
ISSN: ISSN 0036-8075
PubMed: 14526082
DOI: 10.1126/SCIENCE.1086957
Page generated: Thu Jul 11 13:59:29 2024

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