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Calcium in PDB 1qfk: Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation

Enzymatic activity of Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation

All present enzymatic activity of Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation:
3.4.21.21;

Protein crystallography data

The structure of Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation, PDB code: 1qfk was solved by A.C.W.Pike, A.M.Brzozowski, S.M.Roberts, O.H.Olsen, E.Persson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.80
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 115.300, 115.300, 98.000, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 26.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation (pdb code 1qfk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation, PDB code: 1qfk:

Calcium binding site 1 out of 1 in 1qfk

Go back to Calcium Binding Sites List in 1qfk
Calcium binding site 1 out of 1 in the Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca500

b:73.2
occ:1.00
 O H:GLU215 2.6 79.2 1.0
OE1 H:GLU210 2.6 44.6 1.0
O H:HOH561 2.8 61.5 1.0
O H:HOH547 2.8 51.6 1.0
O H:ASP212 2.8 60.3 1.0
OE2 H:GLU220 2.9 66.9 1.0
CD H:GLU210 3.2 46.0 1.0
OE2 H:GLU210 3.3 45.7 1.0
CD H:GLU220 3.4 67.5 1.0
C H:ASP212 3.6 59.5 1.0
N H:ASP212 3.7 56.4 1.0
CG H:GLU220 3.8 66.5 1.0
C H:GLU215 3.9 79.8 1.0
CA H:ASP212 4.1 58.8 1.0
OE1 H:GLU220 4.2 68.0 1.0
N H:HIS211 4.3 46.7 1.0
CB H:ASP212 4.4 60.2 1.0
N H:LEU213 4.4 61.1 1.0
CA H:HIS216 4.4 78.7 1.0
N H:ASP217 4.5 72.3 1.0
CA H:LEU213 4.5 63.1 1.0
N H:HIS216 4.6 79.5 1.0
CG H:GLU210 4.7 46.0 1.0
C H:HIS211 4.7 55.3 1.0
N H:GLU215 4.7 76.8 1.0
C H:HIS216 4.8 75.1 1.0
CA H:GLU215 4.9 80.0 1.0
CA H:GLU210 4.9 40.9 1.0
OD1 H:ASP217 4.9 69.0 1.0
C H:LEU213 5.0 65.2 1.0
CA H:HIS211 5.0 53.2 1.0

Reference:

A.C.Pike, A.M.Brzozowski, S.M.Roberts, O.H.Olsen, E.Persson. Structure of Human Factor Viia and Its Implications For the Triggering of Blood Coagulation. Proc.Natl.Acad.Sci.Usa V. 96 8925 1999.
ISSN: ISSN 0027-8424
PubMed: 10430872
DOI: 10.1073/PNAS.96.16.8925
Page generated: Thu Jul 11 21:43:12 2024

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