Calcium in PDB 1qlk: Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures
Calcium Binding Sites:
The binding sites of Calcium atom in the Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures
(pdb code 1qlk). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures, PDB code: 1qlk:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 1qlk
Go back to
Calcium Binding Sites List in 1qlk
Calcium binding site 1 out
of 4 in the Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca92
b:0.0
occ:1.00
|
OE1
|
A:GLU31
|
2.6
|
0.0
|
1.0
|
HB2
|
A:SER18
|
2.6
|
0.0
|
1.0
|
O
|
A:ASP23
|
2.7
|
0.0
|
1.0
|
HD13
|
A:LEU27
|
2.8
|
0.0
|
1.0
|
O
|
A:LYS26
|
2.9
|
0.0
|
1.0
|
O
|
A:SER18
|
3.0
|
0.0
|
1.0
|
HA
|
A:LEU27
|
3.0
|
0.0
|
1.0
|
HA
|
A:SER18
|
3.0
|
0.0
|
1.0
|
HB2
|
A:ASP23
|
3.4
|
0.0
|
1.0
|
CD
|
A:GLU31
|
3.4
|
0.0
|
1.0
|
CB
|
A:SER18
|
3.5
|
0.0
|
1.0
|
CA
|
A:SER18
|
3.5
|
0.0
|
1.0
|
OE2
|
A:GLU31
|
3.5
|
0.0
|
1.0
|
C
|
A:SER18
|
3.6
|
0.0
|
1.0
|
OE1
|
A:GLU21
|
3.6
|
0.0
|
1.0
|
HB3
|
A:ASP23
|
3.8
|
0.0
|
1.0
|
CD1
|
A:LEU27
|
3.8
|
0.0
|
1.0
|
C
|
A:ASP23
|
3.8
|
0.0
|
1.0
|
C
|
A:LYS26
|
4.0
|
0.0
|
1.0
|
CB
|
A:ASP23
|
4.0
|
0.0
|
1.0
|
CA
|
A:LEU27
|
4.0
|
0.0
|
1.0
|
H
|
A:LYS28
|
4.1
|
0.0
|
1.0
|
OE2
|
A:GLU21
|
4.1
|
0.0
|
1.0
|
CD
|
A:GLU21
|
4.1
|
0.0
|
1.0
|
HD12
|
A:LEU27
|
4.1
|
0.0
|
1.0
|
HB3
|
A:SER18
|
4.1
|
0.0
|
1.0
|
HA
|
A:LYS24
|
4.2
|
0.0
|
1.0
|
HB2
|
A:GLU21
|
4.2
|
0.0
|
1.0
|
HG
|
A:LEU27
|
4.2
|
0.0
|
1.0
|
OG
|
A:SER18
|
4.4
|
0.0
|
1.0
|
N
|
A:LEU27
|
4.5
|
0.0
|
1.0
|
HD11
|
A:LEU27
|
4.5
|
0.0
|
1.0
|
H
|
A:LYS26
|
4.5
|
0.0
|
1.0
|
CG
|
A:LEU27
|
4.5
|
0.0
|
1.0
|
H
|
A:GLU21
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP23
|
4.5
|
0.0
|
1.0
|
N
|
A:LYS24
|
4.7
|
0.0
|
1.0
|
N
|
A:LYS28
|
4.8
|
0.0
|
1.0
|
HB2
|
A:GLU31
|
4.8
|
0.0
|
1.0
|
CB
|
A:LEU27
|
4.8
|
0.0
|
1.0
|
CG
|
A:GLU31
|
4.9
|
0.0
|
1.0
|
CA
|
A:LYS24
|
4.9
|
0.0
|
1.0
|
N
|
A:GLY19
|
4.9
|
0.0
|
1.0
|
N
|
A:SER18
|
5.0
|
0.0
|
1.0
|
C
|
A:LEU27
|
5.0
|
0.0
|
1.0
|
H
|
A:ASP23
|
5.0
|
0.0
|
1.0
|
HB3
|
A:GLU31
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 4 in 1qlk
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Calcium Binding Sites List in 1qlk
Calcium binding site 2 out
of 4 in the Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca93
b:0.0
occ:1.00
|
OE2
|
A:GLU72
|
2.1
|
0.0
|
1.0
|
OD1
|
A:ASP65
|
2.3
|
0.0
|
1.0
|
OE1
|
A:GLU72
|
2.5
|
0.0
|
1.0
|
CD
|
A:GLU72
|
2.5
|
0.0
|
1.0
|
H
|
A:ASP65
|
2.7
|
0.0
|
1.0
|
O
|
A:GLU67
|
2.9
|
0.0
|
1.0
|
OD1
|
A:ASP63
|
3.0
|
0.0
|
1.0
|
OD1
|
A:ASP61
|
3.0
|
0.0
|
1.0
|
HA
|
A:ASP61
|
3.1
|
0.0
|
1.0
|
CG
|
A:ASP65
|
3.2
|
0.0
|
1.0
|
HB3
|
A:ASP61
|
3.4
|
0.0
|
1.0
|
CG
|
A:ASP61
|
3.6
|
0.0
|
1.0
|
N
|
A:ASP65
|
3.6
|
0.0
|
1.0
|
H
|
A:GLY64
|
3.7
|
0.0
|
1.0
|
H
|
A:GLU62
|
3.7
|
0.0
|
1.0
|
OD2
|
A:ASP65
|
3.7
|
0.0
|
1.0
|
HA
|
A:CYS68
|
3.8
|
0.0
|
1.0
|
H
|
A:GLY66
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASP61
|
3.8
|
0.0
|
1.0
|
H
|
A:ASP63
|
3.8
|
0.0
|
1.0
|
CA
|
A:ASP61
|
3.9
|
0.0
|
1.0
|
H
|
A:GLU67
|
3.9
|
0.0
|
1.0
|
HA2
|
A:GLY64
|
4.0
|
0.0
|
1.0
|
CG
|
A:GLU72
|
4.0
|
0.0
|
1.0
|
C
|
A:GLU67
|
4.0
|
0.0
|
1.0
|
N
|
A:GLY64
|
4.1
|
0.0
|
1.0
|
CG
|
A:ASP63
|
4.1
|
0.0
|
1.0
|
CB
|
A:ASP65
|
4.3
|
0.0
|
1.0
|
HG2
|
A:GLU72
|
4.3
|
0.0
|
1.0
|
N
|
A:GLU62
|
4.3
|
0.0
|
1.0
|
CA
|
A:GLY64
|
4.4
|
0.0
|
1.0
|
HB3
|
A:ASP65
|
4.4
|
0.0
|
1.0
|
N
|
A:GLY66
|
4.5
|
0.0
|
1.0
|
C
|
A:GLY64
|
4.5
|
0.0
|
1.0
|
N
|
A:GLU67
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP65
|
4.5
|
0.0
|
1.0
|
HG3
|
A:GLU72
|
4.5
|
0.0
|
1.0
|
C
|
A:ASP61
|
4.5
|
0.0
|
1.0
|
OD2
|
A:ASP61
|
4.6
|
0.0
|
1.0
|
OD2
|
A:ASP63
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP63
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS68
|
4.7
|
0.0
|
1.0
|
HB3
|
A:GLU72
|
4.8
|
0.0
|
1.0
|
N
|
A:CYS68
|
4.8
|
0.0
|
1.0
|
C
|
A:ASP63
|
4.8
|
0.0
|
1.0
|
HB3
|
A:CYS68
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASP61
|
4.9
|
0.0
|
1.0
|
C
|
A:ASP65
|
4.9
|
0.0
|
1.0
|
H
|
A:ASP69
|
4.9
|
0.0
|
1.0
|
CB
|
A:GLU72
|
4.9
|
0.0
|
1.0
|
CA
|
A:GLU67
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 3 out
of 4 in 1qlk
Go back to
Calcium Binding Sites List in 1qlk
Calcium binding site 3 out
of 4 in the Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca92
b:0.0
occ:1.00
|
HB2
|
B:SER18
|
2.5
|
0.0
|
1.0
|
O
|
B:ASP23
|
2.5
|
0.0
|
1.0
|
O
|
B:LYS26
|
2.7
|
0.0
|
1.0
|
HD11
|
B:LEU27
|
2.9
|
0.0
|
1.0
|
O
|
B:SER18
|
2.9
|
0.0
|
1.0
|
OE1
|
B:GLU31
|
2.9
|
0.0
|
1.0
|
HA
|
B:LEU27
|
3.1
|
0.0
|
1.0
|
HA
|
B:SER18
|
3.1
|
0.0
|
1.0
|
CB
|
B:SER18
|
3.4
|
0.0
|
1.0
|
HB2
|
B:ASP23
|
3.4
|
0.0
|
1.0
|
CA
|
B:SER18
|
3.5
|
0.0
|
1.0
|
C
|
B:SER18
|
3.6
|
0.0
|
1.0
|
C
|
B:ASP23
|
3.6
|
0.0
|
1.0
|
HB3
|
B:ASP23
|
3.7
|
0.0
|
1.0
|
CD
|
B:GLU31
|
3.7
|
0.0
|
1.0
|
C
|
B:LYS26
|
3.8
|
0.0
|
1.0
|
OE2
|
B:GLU31
|
3.8
|
0.0
|
1.0
|
OE1
|
B:GLU21
|
3.9
|
0.0
|
1.0
|
HA
|
B:LYS24
|
3.9
|
0.0
|
1.0
|
CD1
|
B:LEU27
|
3.9
|
0.0
|
1.0
|
CB
|
B:ASP23
|
3.9
|
0.0
|
1.0
|
HB3
|
B:SER18
|
4.0
|
0.0
|
1.0
|
CA
|
B:LEU27
|
4.1
|
0.0
|
1.0
|
HG
|
B:SER18
|
4.2
|
0.0
|
1.0
|
HD13
|
B:LEU27
|
4.2
|
0.0
|
1.0
|
H
|
B:LYS26
|
4.2
|
0.0
|
1.0
|
H
|
B:LYS28
|
4.3
|
0.0
|
1.0
|
OG
|
B:SER18
|
4.3
|
0.0
|
1.0
|
HB2
|
B:GLU21
|
4.3
|
0.0
|
1.0
|
CD
|
B:GLU21
|
4.3
|
0.0
|
1.0
|
OE2
|
B:GLU21
|
4.4
|
0.0
|
1.0
|
HG
|
B:LEU27
|
4.4
|
0.0
|
1.0
|
N
|
B:LEU27
|
4.4
|
0.0
|
1.0
|
CA
|
B:ASP23
|
4.4
|
0.0
|
1.0
|
N
|
B:LYS24
|
4.5
|
0.0
|
1.0
|
CA
|
B:LYS24
|
4.6
|
0.0
|
1.0
|
HD12
|
B:LEU27
|
4.6
|
0.0
|
1.0
|
H
|
B:GLU21
|
4.6
|
0.0
|
1.0
|
CG
|
B:LEU27
|
4.6
|
0.0
|
1.0
|
N
|
B:LYS26
|
4.8
|
0.0
|
1.0
|
N
|
B:GLY19
|
4.8
|
0.0
|
1.0
|
CB
|
B:LEU27
|
4.9
|
0.0
|
1.0
|
C
|
B:LYS24
|
4.9
|
0.0
|
1.0
|
H
|
B:ASP23
|
5.0
|
0.0
|
1.0
|
N
|
B:SER18
|
5.0
|
0.0
|
1.0
|
CA
|
B:LYS26
|
5.0
|
0.0
|
1.0
|
N
|
B:LYS28
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 4 out
of 4 in 1qlk
Go back to
Calcium Binding Sites List in 1qlk
Calcium binding site 4 out
of 4 in the Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Solution Structure of Ca(2+)-Loaded Rat S100B (Betabeta) uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca93
b:0.0
occ:1.00
|
OD1
|
B:ASP65
|
2.1
|
0.0
|
1.0
|
OE2
|
B:GLU72
|
2.2
|
0.0
|
1.0
|
H
|
B:ASP65
|
2.5
|
0.0
|
1.0
|
OE1
|
B:GLU72
|
2.7
|
0.0
|
1.0
|
CD
|
B:GLU72
|
2.7
|
0.0
|
1.0
|
O
|
B:GLU67
|
2.9
|
0.0
|
1.0
|
OD1
|
B:ASP63
|
2.9
|
0.0
|
1.0
|
CG
|
B:ASP65
|
3.0
|
0.0
|
1.0
|
OD1
|
B:ASP61
|
3.1
|
0.0
|
1.0
|
HA
|
B:ASP61
|
3.2
|
0.0
|
1.0
|
N
|
B:ASP65
|
3.4
|
0.0
|
1.0
|
HB3
|
B:ASP61
|
3.5
|
0.0
|
1.0
|
OD2
|
B:ASP65
|
3.6
|
0.0
|
1.0
|
H
|
B:GLY66
|
3.6
|
0.0
|
1.0
|
H
|
B:GLY64
|
3.6
|
0.0
|
1.0
|
CG
|
B:ASP61
|
3.7
|
0.0
|
1.0
|
H
|
B:GLU67
|
3.7
|
0.0
|
1.0
|
H
|
B:GLU62
|
3.8
|
0.0
|
1.0
|
HA2
|
B:GLY64
|
3.8
|
0.0
|
1.0
|
H
|
B:ASP63
|
3.8
|
0.0
|
1.0
|
HA
|
B:CYS68
|
3.9
|
0.0
|
1.0
|
CB
|
B:ASP61
|
3.9
|
0.0
|
1.0
|
N
|
B:GLY64
|
4.0
|
0.0
|
1.0
|
CA
|
B:ASP61
|
4.0
|
0.0
|
1.0
|
C
|
B:GLU67
|
4.0
|
0.0
|
1.0
|
CG
|
B:ASP63
|
4.0
|
0.0
|
1.0
|
CB
|
B:ASP65
|
4.1
|
0.0
|
1.0
|
CG
|
B:GLU72
|
4.2
|
0.0
|
1.0
|
CA
|
B:GLY64
|
4.2
|
0.0
|
1.0
|
HB3
|
B:ASP65
|
4.3
|
0.0
|
1.0
|
CA
|
B:ASP65
|
4.3
|
0.0
|
1.0
|
N
|
B:GLY66
|
4.3
|
0.0
|
1.0
|
C
|
B:GLY64
|
4.3
|
0.0
|
1.0
|
N
|
B:GLU67
|
4.4
|
0.0
|
1.0
|
N
|
B:GLU62
|
4.4
|
0.0
|
1.0
|
HG2
|
B:GLU72
|
4.5
|
0.0
|
1.0
|
OD2
|
B:ASP63
|
4.5
|
0.0
|
1.0
|
OD2
|
B:ASP61
|
4.6
|
0.0
|
1.0
|
N
|
B:ASP63
|
4.6
|
0.0
|
1.0
|
C
|
B:ASP61
|
4.6
|
0.0
|
1.0
|
HG3
|
B:GLU72
|
4.6
|
0.0
|
1.0
|
C
|
B:ASP65
|
4.7
|
0.0
|
1.0
|
C
|
B:ASP63
|
4.7
|
0.0
|
1.0
|
CA
|
B:CYS68
|
4.8
|
0.0
|
1.0
|
N
|
B:CYS68
|
4.8
|
0.0
|
1.0
|
CA
|
B:GLU67
|
4.9
|
0.0
|
1.0
|
HB2
|
B:ASP61
|
4.9
|
0.0
|
1.0
|
HB3
|
B:GLU72
|
4.9
|
0.0
|
1.0
|
H
|
B:ASP69
|
5.0
|
0.0
|
1.0
|
HB3
|
B:CYS68
|
5.0
|
0.0
|
1.0
|
|
Reference:
A.C.Drohat,
D.M.Baldisseri,
R.R.Rustandi,
D.J.Weber.
Solution Structure of Calcium-Bound Rat S100B(Betabeta) As Determined By Nuclear Magnetic Resonance Spectroscopy,. Biochemistry V. 37 2729 1998.
ISSN: ISSN 0006-2960
PubMed: 9485423
DOI: 10.1021/BI972635P
Page generated: Thu Jul 11 21:51:24 2024
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