Atomistry » Calcium » PDB 1qls-1ra1 » 1r54
Atomistry »
  Calcium »
    PDB 1qls-1ra1 »
      1r54 »

Calcium in PDB 1r54: Crystal Structure of the Catalytic Domain of Human ADAM33

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of Human ADAM33, PDB code: 1r54 was solved by P.Orth, P.Reicher, W.Wang, W.W.Prosise, T.Yarosh-Tomaine, G.Hammond, L.Xiao, U.A.Mirza, J.Zou, C.Strickland, S.S.Taremi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.85
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 56.476, 65.461, 99.863, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 23.3

Other elements in 1r54:

The structure of Crystal Structure of the Catalytic Domain of Human ADAM33 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Catalytic Domain of Human ADAM33 (pdb code 1r54). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Catalytic Domain of Human ADAM33, PDB code: 1r54:

Calcium binding site 1 out of 1 in 1r54

Go back to Calcium Binding Sites List in 1r54
Calcium binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of Human ADAM33


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Catalytic Domain of Human ADAM33 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:17.4
occ:1.00
O A:CYS404 2.3 18.3 1.0
OE1 A:GLU213 2.3 20.0 1.0
OD1 A:ASN407 2.4 18.8 1.0
O A:HOH10 2.4 16.9 1.0
OD1 A:ASP296 2.5 17.2 1.0
OD2 A:ASP296 2.5 15.8 1.0
CG A:ASP296 2.8 16.9 1.0
CG A:ASN407 3.4 20.6 1.0
CD A:GLU213 3.4 20.7 1.0
C A:CYS404 3.5 18.8 1.0
ND2 A:ASN407 3.7 20.0 1.0
CG A:GLU213 3.8 19.1 1.0
CB A:GLU213 4.3 18.5 1.0
CB A:ASP296 4.3 16.9 1.0
CA A:LEU405 4.4 19.5 1.0
CB A:CYS404 4.4 18.7 1.0
O A:TYR211 4.4 19.4 1.0
N A:LEU405 4.4 19.0 1.0
CA A:CYS404 4.4 18.9 1.0
OE2 A:GLU213 4.5 22.0 1.0
O A:ASN407 4.5 22.1 1.0
CB A:ASN407 4.7 20.8 1.0
N A:ASN407 4.8 21.7 1.0
N A:GLU213 4.8 17.1 1.0
SG A:CYS404 4.9 18.8 1.0
C A:LEU405 4.9 20.1 1.0

Reference:

P.Orth, P.Reichert, W.Wang, W.W.Prosise, T.Yarosh-Tomaine, G.Hammond, L.Xiao, U.A.Mirza, J.Zou, C.Strickland, S.S.Taremi, H.V.Le, V.Madison. Crystal Structre of the Catalytic Domain of Human ADAM33 J.Mol.Biol. V. 335 129 2004.
ISSN: ISSN 0022-2836
PubMed: 14659745
DOI: 10.1016/J.JMB.2003.10.037
Page generated: Sat Dec 12 03:17:18 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy