Atomistry » Calcium » PDB 1rc8-1rpk » 1rk9
Atomistry »
  Calcium »
    PDB 1rc8-1rpk »
      1rk9 »

Calcium in PDB 1rk9: Solution Structure of Human Alpha-Parvalbumin (Minimized Average Structure)

Calcium Binding Sites:

The binding sites of Calcium atom in the Solution Structure of Human Alpha-Parvalbumin (Minimized Average Structure) (pdb code 1rk9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of Human Alpha-Parvalbumin (Minimized Average Structure), PDB code: 1rk9:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1rk9

Go back to Calcium Binding Sites List in 1rk9
Calcium binding site 1 out of 2 in the Solution Structure of Human Alpha-Parvalbumin (Minimized Average Structure)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of Human Alpha-Parvalbumin (Minimized Average Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca111

b:0.0
occ:1.00
OD2 A:ASP95 2.1 0.0 1.0
OE1 A:GLU102 2.1 0.0 1.0
HB3 A:ASP93 2.4 0.0 1.0
HB2 A:ASP93 2.8 0.0 1.0
CD A:GLU102 3.0 0.0 1.0
CB A:ASP93 3.0 0.0 1.0
OD2 A:ASP93 3.0 0.0 1.0
OD1 A:ASP91 3.0 0.0 1.0
O A:LYS97 3.1 0.0 1.0
OE2 A:GLU102 3.3 0.0 1.0
CG A:ASP95 3.3 0.0 1.0
HB2 A:ASP95 3.4 0.0 1.0
CG A:ASP93 3.5 0.0 1.0
H A:ASP95 3.9 0.0 1.0
H A:GLY99 3.9 0.0 1.0
CB A:ASP95 3.9 0.0 1.0
H A:ASP93 4.1 0.0 1.0
HA A:ASP91 4.2 0.0 1.0
HG2 A:GLU102 4.2 0.0 1.0
CG A:GLU102 4.2 0.0 1.0
CG A:ASP91 4.3 0.0 1.0
HA3 A:GLY99 4.3 0.0 1.0
C A:LYS97 4.3 0.0 1.0
OD1 A:ASP95 4.3 0.0 1.0
N A:GLY99 4.3 0.0 1.0
CA A:ASP93 4.4 0.0 1.0
H A:LYS97 4.4 0.0 1.0
N A:ASP93 4.6 0.0 1.0
N A:ASP95 4.7 0.0 1.0
HB3 A:ASP95 4.7 0.0 1.0
HA A:ILE98 4.7 0.0 1.0
H A:GLY94 4.8 0.0 1.0
OD1 A:ASP93 4.8 0.0 1.0
HB2 A:LYS97 4.8 0.0 1.0
HG3 A:GLU102 4.8 0.0 1.0
C A:ASP93 4.9 0.0 1.0
CA A:GLY99 4.9 0.0 1.0
CA A:ASP95 4.9 0.0 1.0
HD1 A:PHE58 4.9 0.0 1.0
C A:ILE98 5.0 0.0 1.0

Calcium binding site 2 out of 2 in 1rk9

Go back to Calcium Binding Sites List in 1rk9
Calcium binding site 2 out of 2 in the Solution Structure of Human Alpha-Parvalbumin (Minimized Average Structure)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of Human Alpha-Parvalbumin (Minimized Average Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca112

b:0.0
occ:1.00
OD2 A:ASP54 2.2 0.0 1.0
OD1 A:ASP54 2.4 0.0 1.0
OE1 A:GLU63 2.4 0.0 1.0
O A:PHE58 2.5 0.0 1.0
CG A:ASP54 2.7 0.0 1.0
OE2 A:GLU60 3.0 0.0 1.0
OD1 A:ASP52 3.0 0.0 1.0
OG A:SER56 3.0 0.0 1.0
CD A:GLU63 3.1 0.0 1.0
OE2 A:GLU63 3.3 0.0 1.0
HG A:SER56 3.4 0.0 1.0
HA A:ILE59 3.5 0.0 1.0
H A:PHE58 3.6 0.0 1.0
H A:SER56 3.6 0.0 1.0
C A:PHE58 3.7 0.0 1.0
HB3 A:SER56 4.0 0.0 1.0
CB A:SER56 4.0 0.0 1.0
H A:ASP54 4.0 0.0 1.0
HA A:ASP52 4.0 0.0 1.0
CG A:ASP52 4.0 0.0 1.0
H A:GLU60 4.1 0.0 1.0
CB A:ASP54 4.1 0.0 1.0
CD A:GLU60 4.2 0.0 1.0
HB2 A:PHE58 4.3 0.0 1.0
CA A:ILE59 4.4 0.0 1.0
CG A:GLU63 4.4 0.0 1.0
N A:PHE58 4.4 0.0 1.0
N A:SER56 4.4 0.0 1.0
HG2 A:GLU60 4.5 0.0 1.0
HG3 A:GLU63 4.5 0.0 1.0
HB3 A:ASP54 4.5 0.0 1.0
N A:ILE59 4.5 0.0 1.0
H A:GLY57 4.6 0.0 1.0
CA A:PHE58 4.6 0.0 1.0
CA A:SER56 4.7 0.0 1.0
OD2 A:ASP52 4.7 0.0 1.0
HB2 A:ASP54 4.8 0.0 1.0
N A:ASP54 4.8 0.0 1.0
N A:GLU60 4.8 0.0 1.0
HB2 A:GLU63 4.8 0.0 1.0
CA A:ASP52 4.9 0.0 1.0
HB2 A:SER56 4.9 0.0 1.0
CA A:ASP54 4.9 0.0 1.0
H A:LYS55 4.9 0.0 1.0
CG A:GLU60 4.9 0.0 1.0
CB A:PHE58 5.0 0.0 1.0
N A:GLY57 5.0 0.0 1.0
CB A:ASP52 5.0 0.0 1.0

Reference:

I.Baig, I.Bertini, C.Del Bianco, Y.K.Gupta, Y.-M.Lee, C.Luchinat, A.Quattrone. Paramagnetism-Based Refinement Strategy For the Solution Structure of Human Alpha-Parvalbumin Biochemistry V. 43 5562 2004.
ISSN: ISSN 0006-2960
PubMed: 15122922
DOI: 10.1021/BI035879K
Page generated: Sat Dec 12 03:17:51 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy