Calcium in PDB 1rtm: Trimeric Structure of A C-Type Mannose-Binding Protein
Protein crystallography data
The structure of Trimeric Structure of A C-Type Mannose-Binding Protein, PDB code: 1rtm
was solved by
W.I.Weis,
K.Drickamer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
10.00 /
1.80
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.000,
85.100,
98.500,
90.00,
106.30,
90.00
|
|
R / Rfree (%)
|
22 /
27
|
Other elements in 1rtm:
The structure of Trimeric Structure of A C-Type Mannose-Binding Protein also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Trimeric Structure of A C-Type Mannose-Binding Protein
(pdb code 1rtm). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
Trimeric Structure of A C-Type Mannose-Binding Protein, PDB code: 1rtm:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 1 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Ca1
b:18.4
occ:1.00
|
O
|
1:HOH235
|
2.3
|
15.1
|
1.0
|
|
O
|
1:GLU193
|
2.3
|
20.7
|
1.0
|
|
OD2
|
1:ASP161
|
2.3
|
20.9
|
1.0
|
|
OD1
|
1:ASP194
|
2.4
|
16.5
|
1.0
|
|
OD1
|
1:ASP188
|
2.5
|
17.3
|
1.0
|
|
OE2
|
1:GLU165
|
2.5
|
21.5
|
1.0
|
|
OE1
|
1:GLU165
|
2.6
|
20.1
|
1.0
|
|
OD1
|
1:ASP161
|
2.7
|
21.5
|
1.0
|
|
CG
|
1:ASP161
|
2.9
|
19.5
|
1.0
|
|
CD
|
1:GLU165
|
2.9
|
21.3
|
1.0
|
|
CG
|
1:ASP188
|
3.3
|
19.2
|
1.0
|
|
C
|
1:GLU193
|
3.4
|
17.8
|
1.0
|
|
CG
|
1:ASP194
|
3.6
|
18.9
|
1.0
|
|
CA
|
1:ASP194
|
3.8
|
15.8
|
1.0
|
|
CB
|
1:ASP188
|
3.8
|
18.9
|
1.0
|
|
O
|
1:HOH234
|
3.9
|
22.4
|
1.0
|
|
N
|
1:ASP194
|
4.0
|
15.6
|
1.0
|
|
CA
|
1:CA3
|
4.1
|
20.9
|
1.0
|
|
OD2
|
1:ASP188
|
4.2
|
18.7
|
1.0
|
|
CB
|
1:ASP194
|
4.3
|
18.3
|
1.0
|
|
N
|
1:GLU193
|
4.3
|
20.6
|
1.0
|
|
CB
|
1:ASP161
|
4.4
|
19.2
|
1.0
|
|
CG
|
1:GLU165
|
4.4
|
20.3
|
1.0
|
|
CA
|
1:ASP188
|
4.4
|
22.6
|
1.0
|
|
CA
|
1:GLU193
|
4.5
|
20.0
|
1.0
|
|
CZ
|
1:PHE168
|
4.5
|
21.0
|
1.0
|
|
OD2
|
1:ASP194
|
4.6
|
17.1
|
1.0
|
|
N
|
1:GLY166
|
4.7
|
21.8
|
1.0
|
|
O
|
1:HOH236
|
4.7
|
22.0
|
1.0
|
|
O
|
1:ASP161
|
4.7
|
17.8
|
1.0
|
|
O
|
1:HOH309
|
4.8
|
27.2
|
1.0
|
|
OD2
|
1:ASP206
|
4.8
|
21.6
|
1.0
|
|
O
|
1:HOH233
|
4.8
|
17.0
|
1.0
|
|
C
|
1:ASP194
|
5.0
|
16.0
|
1.0
|
|
CA
|
1:GLU165
|
5.0
|
20.8
|
1.0
|
|
Calcium binding site 2 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 2 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Ca2
b:23.7
occ:1.00
|
OD1
|
1:ASP206
|
2.2
|
17.9
|
1.0
|
|
OE1
|
1:GLU193
|
2.4
|
19.4
|
1.0
|
|
OD1
|
1:ASN205
|
2.5
|
14.5
|
1.0
|
|
OD1
|
1:ASN187
|
2.5
|
26.4
|
1.0
|
|
O
|
1:ASP206
|
2.5
|
19.8
|
1.0
|
|
OE1
|
1:GLU185
|
2.6
|
21.3
|
1.0
|
|
O3
|
1:GOL222
|
2.6
|
26.2
|
1.0
|
|
O2
|
1:GOL222
|
2.8
|
32.5
|
1.0
|
|
CG
|
1:ASP206
|
3.3
|
17.8
|
1.0
|
|
CD
|
1:GLU193
|
3.4
|
17.3
|
1.0
|
|
CG
|
1:ASN205
|
3.5
|
12.6
|
1.0
|
|
CG
|
1:ASN187
|
3.5
|
23.1
|
1.0
|
|
CD
|
1:GLU185
|
3.5
|
24.6
|
1.0
|
|
C3
|
1:GOL222
|
3.5
|
33.5
|
1.0
|
|
C
|
1:ASP206
|
3.6
|
21.0
|
1.0
|
|
C2
|
1:GOL222
|
3.7
|
35.2
|
1.0
|
|
N
|
1:ASP206
|
3.7
|
18.8
|
1.0
|
|
OE2
|
1:GLU193
|
3.8
|
20.6
|
1.0
|
|
OE2
|
1:GLU185
|
3.8
|
25.6
|
1.0
|
|
ND2
|
1:ASN205
|
3.8
|
15.9
|
1.0
|
|
OD2
|
1:ASP206
|
4.0
|
21.6
|
1.0
|
|
ND2
|
1:ASN187
|
4.0
|
23.6
|
1.0
|
|
CA
|
1:ASP206
|
4.0
|
16.8
|
1.0
|
|
CB
|
1:ASP206
|
4.2
|
19.4
|
1.0
|
|
N
|
1:ASN187
|
4.3
|
21.4
|
1.0
|
|
CB
|
1:HIS189
|
4.4
|
28.5
|
1.0
|
|
C
|
1:ASN205
|
4.6
|
17.7
|
1.0
|
|
CB
|
1:ASN187
|
4.7
|
25.1
|
1.0
|
|
CG
|
1:GLU193
|
4.7
|
17.8
|
1.0
|
|
N
|
1:HIS189
|
4.7
|
24.8
|
1.0
|
|
N
|
1:ILE207
|
4.7
|
18.8
|
1.0
|
|
CG
|
1:GLU185
|
4.7
|
23.4
|
1.0
|
|
CB
|
1:ASN205
|
4.8
|
16.2
|
1.0
|
|
N
|
1:ASP188
|
4.8
|
22.5
|
1.0
|
|
CA
|
1:ASN187
|
4.9
|
24.4
|
1.0
|
|
CA
|
1:ASN205
|
4.9
|
17.8
|
1.0
|
|
CB
|
1:GLU193
|
4.9
|
18.8
|
1.0
|
|
C1
|
1:GOL222
|
5.0
|
38.4
|
1.0
|
|
Calcium binding site 3 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 3 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Ca3
b:20.9
occ:1.00
|
OE1
|
1:GLU165
|
2.3
|
20.1
|
1.0
|
|
O
|
1:HOH233
|
2.4
|
17.0
|
1.0
|
|
O
|
1:HOH234
|
2.5
|
22.4
|
1.0
|
|
OD2
|
1:ASP194
|
2.6
|
17.1
|
1.0
|
|
OD1
|
1:ASP194
|
2.7
|
16.5
|
1.0
|
|
CG
|
1:ASP194
|
3.0
|
18.9
|
1.0
|
|
CD
|
1:GLU165
|
3.5
|
21.3
|
1.0
|
|
CB
|
1:GLU165
|
4.1
|
20.8
|
1.0
|
|
CA
|
1:CA1
|
4.1
|
18.4
|
1.0
|
|
CG
|
1:GLU165
|
4.1
|
20.3
|
1.0
|
|
O
|
1:HOH285
|
4.3
|
21.3
|
1.0
|
|
OD1
|
1:ASP188
|
4.4
|
17.3
|
1.0
|
|
OE2
|
1:GLU165
|
4.5
|
21.5
|
1.0
|
|
O
|
1:HOH284
|
4.5
|
53.1
|
1.0
|
|
CB
|
1:ASP194
|
4.5
|
18.3
|
1.0
|
|
O
|
1:HOH369
|
4.5
|
16.3
|
1.0
|
|
O
|
1:ASP161
|
4.6
|
17.8
|
1.0
|
|
CA
|
1:GLU165
|
4.6
|
20.8
|
1.0
|
|
O
|
1:HOH232
|
4.8
|
27.7
|
1.0
|
|
Calcium binding site 4 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 4 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Ca1
b:27.6
occ:1.00
|
O
|
2:HOH243
|
2.3
|
23.9
|
1.0
|
|
OD1
|
2:ASP194
|
2.4
|
24.0
|
1.0
|
|
OD2
|
2:ASP161
|
2.5
|
28.3
|
1.0
|
|
OE2
|
2:GLU165
|
2.5
|
30.6
|
1.0
|
|
OD1
|
2:ASP188
|
2.6
|
35.1
|
1.0
|
|
O
|
2:GLU193
|
2.6
|
28.6
|
1.0
|
|
OE1
|
2:GLU165
|
2.7
|
28.2
|
1.0
|
|
OD1
|
2:ASP161
|
2.7
|
24.6
|
1.0
|
|
CG
|
2:ASP161
|
3.0
|
27.1
|
1.0
|
|
CD
|
2:GLU165
|
3.0
|
31.6
|
1.0
|
|
CG
|
2:ASP188
|
3.4
|
33.9
|
1.0
|
|
C
|
2:GLU193
|
3.5
|
28.7
|
1.0
|
|
CG
|
2:ASP194
|
3.5
|
26.1
|
1.0
|
|
CA
|
2:ASP194
|
3.8
|
26.6
|
1.0
|
|
CA
|
2:CA3
|
3.8
|
32.6
|
1.0
|
|
CB
|
2:ASP188
|
3.9
|
33.3
|
1.0
|
|
N
|
2:ASP194
|
4.0
|
27.6
|
1.0
|
|
O
|
2:HOH234
|
4.1
|
36.1
|
1.0
|
|
O
|
2:HOH282
|
4.2
|
28.7
|
1.0
|
|
CB
|
2:ASP194
|
4.2
|
26.6
|
1.0
|
|
N
|
2:GLU193
|
4.4
|
31.2
|
1.0
|
|
OD2
|
2:ASP188
|
4.4
|
37.0
|
1.0
|
|
OD2
|
2:ASP194
|
4.5
|
27.3
|
1.0
|
|
CB
|
2:ASP161
|
4.5
|
28.1
|
1.0
|
|
CG
|
2:GLU165
|
4.5
|
32.4
|
1.0
|
|
CA
|
2:ASP188
|
4.5
|
32.8
|
1.0
|
|
CA
|
2:GLU193
|
4.5
|
30.0
|
1.0
|
|
OD2
|
2:ASP206
|
4.6
|
26.0
|
1.0
|
|
CZ
|
2:PHE168
|
4.6
|
28.8
|
1.0
|
|
N
|
2:GLY166
|
4.8
|
29.6
|
1.0
|
|
O
|
2:ASP161
|
4.9
|
28.8
|
1.0
|
|
O
|
2:HOH233
|
4.9
|
28.0
|
1.0
|
|
C
|
2:ASP194
|
5.0
|
25.5
|
1.0
|
|
Calcium binding site 5 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 5 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Ca2
b:27.7
occ:1.00
|
OD1
|
2:ASP206
|
2.3
|
29.2
|
1.0
|
|
OE1
|
2:GLU193
|
2.3
|
29.9
|
1.0
|
|
OD1
|
2:ASN187
|
2.4
|
30.2
|
1.0
|
|
O1
|
2:GOL222
|
2.5
|
27.8
|
1.0
|
|
O2
|
2:GOL222
|
2.5
|
36.1
|
1.0
|
|
O
|
2:ASP206
|
2.6
|
27.1
|
1.0
|
|
OD1
|
2:ASN205
|
2.7
|
29.2
|
1.0
|
|
OE1
|
2:GLU185
|
2.8
|
28.6
|
1.0
|
|
C2
|
2:GOL222
|
3.3
|
36.4
|
1.0
|
|
CG
|
2:ASP206
|
3.4
|
29.0
|
1.0
|
|
C1
|
2:GOL222
|
3.4
|
35.9
|
1.0
|
|
CD
|
2:GLU193
|
3.4
|
27.7
|
1.0
|
|
CG
|
2:ASN187
|
3.4
|
34.1
|
1.0
|
|
CD
|
2:GLU185
|
3.6
|
25.9
|
1.0
|
|
C
|
2:ASP206
|
3.6
|
26.6
|
1.0
|
|
CG
|
2:ASN205
|
3.7
|
25.3
|
1.0
|
|
OE2
|
2:GLU185
|
3.8
|
27.0
|
1.0
|
|
OE2
|
2:GLU193
|
3.8
|
28.4
|
1.0
|
|
N
|
2:ASP206
|
3.8
|
22.5
|
1.0
|
|
ND2
|
2:ASN187
|
4.0
|
31.2
|
1.0
|
|
ND2
|
2:ASN205
|
4.0
|
28.2
|
1.0
|
|
OD2
|
2:ASP206
|
4.1
|
26.0
|
1.0
|
|
CA
|
2:ASP206
|
4.1
|
24.8
|
1.0
|
|
N
|
2:ASN187
|
4.2
|
29.2
|
1.0
|
|
CB
|
2:ASP206
|
4.3
|
27.0
|
1.0
|
|
CB
|
2:HIS189
|
4.4
|
37.6
|
1.0
|
|
CB
|
2:ASN187
|
4.6
|
31.4
|
1.0
|
|
N
|
2:HIS189
|
4.6
|
35.2
|
1.0
|
|
N
|
2:ASP188
|
4.6
|
30.7
|
1.0
|
|
C
|
2:ASN205
|
4.7
|
24.4
|
1.0
|
|
CG
|
2:GLU193
|
4.7
|
28.4
|
1.0
|
|
N
|
2:ILE207
|
4.7
|
24.7
|
1.0
|
|
C3
|
2:GOL222
|
4.7
|
38.5
|
1.0
|
|
CA
|
2:ASN187
|
4.8
|
29.6
|
1.0
|
|
CG
|
2:GLU185
|
4.8
|
25.5
|
1.0
|
|
CB
|
2:GLU193
|
4.9
|
29.4
|
1.0
|
|
CB
|
2:ASN205
|
4.9
|
27.3
|
1.0
|
|
C
|
2:ASN187
|
5.0
|
31.6
|
1.0
|
|
O3
|
2:GOL222
|
5.0
|
40.7
|
1.0
|
|
Calcium binding site 6 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 6 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Ca3
b:32.6
occ:1.00
|
OE1
|
2:GLU165
|
2.3
|
28.2
|
1.0
|
|
O
|
2:HOH233
|
2.5
|
28.0
|
1.0
|
|
OD2
|
2:ASP194
|
2.5
|
27.3
|
1.0
|
|
O
|
2:HOH234
|
2.5
|
36.1
|
1.0
|
|
OD1
|
2:ASP194
|
2.6
|
24.0
|
1.0
|
|
CG
|
2:ASP194
|
2.9
|
26.1
|
1.0
|
|
CD
|
2:GLU165
|
3.6
|
31.6
|
1.0
|
|
CA
|
2:CA1
|
3.8
|
27.6
|
1.0
|
|
OD1
|
2:ASP188
|
4.0
|
35.1
|
1.0
|
|
O
|
2:ASP161
|
4.3
|
28.8
|
1.0
|
|
O
|
2:HOH257
|
4.4
|
41.9
|
1.0
|
|
CB
|
2:ASP194
|
4.4
|
26.6
|
1.0
|
|
CB
|
2:GLU165
|
4.4
|
32.5
|
1.0
|
|
CG
|
2:GLU165
|
4.5
|
32.4
|
1.0
|
|
OE2
|
2:GLU165
|
4.5
|
30.6
|
1.0
|
|
OD2
|
2:ASP161
|
4.7
|
28.3
|
1.0
|
|
CA
|
2:GLU165
|
4.7
|
31.0
|
1.0
|
|
OD1
|
2:ASP161
|
4.8
|
24.6
|
1.0
|
|
CG
|
2:ASP188
|
4.8
|
33.9
|
1.0
|
|
OD2
|
2:ASP188
|
4.8
|
37.0
|
1.0
|
|
CG
|
2:ASP161
|
4.9
|
27.1
|
1.0
|
|
O
|
2:HOH301
|
5.0
|
40.0
|
1.0
|
|
Calcium binding site 7 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 7 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Ca1
b:22.0
occ:1.00
|
O
|
3:GLU193
|
2.2
|
20.1
|
1.0
|
|
OD1
|
3:ASP194
|
2.3
|
21.0
|
1.0
|
|
OD2
|
3:ASP161
|
2.4
|
22.3
|
1.0
|
|
OD1
|
3:ASP188
|
2.4
|
22.3
|
1.0
|
|
O
|
3:HOH238
|
2.5
|
22.5
|
1.0
|
|
OE1
|
3:GLU165
|
2.6
|
22.5
|
1.0
|
|
OE2
|
3:GLU165
|
2.6
|
21.9
|
1.0
|
|
OD1
|
3:ASP161
|
2.8
|
21.1
|
1.0
|
|
CG
|
3:ASP161
|
2.9
|
20.8
|
1.0
|
|
CD
|
3:GLU165
|
2.9
|
22.1
|
1.0
|
|
C
|
3:GLU193
|
3.2
|
21.9
|
1.0
|
|
CG
|
3:ASP188
|
3.3
|
21.4
|
1.0
|
|
CG
|
3:ASP194
|
3.5
|
24.9
|
1.0
|
|
CA
|
3:ASP194
|
3.7
|
24.2
|
1.0
|
|
CB
|
3:ASP188
|
3.8
|
22.1
|
1.0
|
|
N
|
3:ASP194
|
3.8
|
22.6
|
1.0
|
|
CA
|
3:CA3
|
4.0
|
25.2
|
1.0
|
|
CB
|
3:ASP194
|
4.2
|
24.2
|
1.0
|
|
N
|
3:GLU193
|
4.2
|
21.3
|
1.0
|
|
OD2
|
3:ASP188
|
4.2
|
24.1
|
1.0
|
|
CA
|
3:GLU193
|
4.3
|
21.0
|
1.0
|
|
CA
|
3:ASP188
|
4.4
|
20.6
|
1.0
|
|
CB
|
3:ASP161
|
4.4
|
23.0
|
1.0
|
|
OD2
|
3:ASP194
|
4.4
|
23.3
|
1.0
|
|
CG
|
3:GLU165
|
4.4
|
22.3
|
1.0
|
|
CZ
|
3:PHE168
|
4.5
|
23.4
|
1.0
|
|
OD2
|
3:ASP206
|
4.6
|
24.8
|
1.0
|
|
O
|
3:HOH246
|
4.7
|
31.5
|
1.0
|
|
N
|
3:GLY166
|
4.8
|
25.9
|
1.0
|
|
O
|
3:HOH247
|
4.8
|
22.2
|
1.0
|
|
O
|
3:ASP161
|
4.8
|
24.4
|
1.0
|
|
C
|
3:ASP194
|
4.9
|
23.2
|
1.0
|
|
CA
|
3:GLU165
|
4.9
|
24.9
|
1.0
|
|
Calcium binding site 8 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 8 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Ca2
b:23.6
occ:1.00
|
OD1
|
3:ASP206
|
2.3
|
18.7
|
1.0
|
|
O2
|
3:GOL222
|
2.3
|
26.2
|
1.0
|
|
OE1
|
3:GLU193
|
2.4
|
18.6
|
1.0
|
|
OD1
|
3:ASN205
|
2.4
|
23.9
|
1.0
|
|
OD1
|
3:ASN187
|
2.5
|
21.9
|
1.0
|
|
O
|
3:ASP206
|
2.6
|
24.4
|
1.0
|
|
OE1
|
3:GLU185
|
2.6
|
28.5
|
1.0
|
|
O1
|
3:GOL222
|
2.8
|
23.6
|
1.0
|
|
CG
|
3:ASP206
|
3.3
|
22.3
|
1.0
|
|
CD
|
3:GLU193
|
3.4
|
19.1
|
1.0
|
|
C2
|
3:GOL222
|
3.4
|
31.8
|
1.0
|
|
CG
|
3:ASN205
|
3.4
|
23.3
|
1.0
|
|
CD
|
3:GLU185
|
3.4
|
31.0
|
1.0
|
|
CG
|
3:ASN187
|
3.5
|
24.5
|
1.0
|
|
C1
|
3:GOL222
|
3.6
|
27.8
|
1.0
|
|
C
|
3:ASP206
|
3.6
|
24.3
|
1.0
|
|
N
|
3:ASP206
|
3.7
|
24.1
|
1.0
|
|
OE2
|
3:GLU185
|
3.8
|
30.3
|
1.0
|
|
OE2
|
3:GLU193
|
3.8
|
21.7
|
1.0
|
|
ND2
|
3:ASN205
|
3.8
|
20.3
|
1.0
|
|
OD2
|
3:ASP206
|
4.0
|
24.8
|
1.0
|
|
CA
|
3:ASP206
|
4.0
|
23.1
|
1.0
|
|
ND2
|
3:ASN187
|
4.1
|
20.1
|
1.0
|
|
CB
|
3:ASP206
|
4.3
|
21.7
|
1.0
|
|
N
|
3:ASN187
|
4.3
|
25.7
|
1.0
|
|
C
|
3:ASN205
|
4.5
|
25.5
|
1.0
|
|
CB
|
3:HIS189
|
4.6
|
25.4
|
1.0
|
|
CG
|
3:GLU193
|
4.6
|
20.1
|
1.0
|
|
CG
|
3:GLU185
|
4.7
|
27.7
|
1.0
|
|
C3
|
3:GOL222
|
4.7
|
34.7
|
1.0
|
|
CB
|
3:ASN205
|
4.7
|
23.9
|
1.0
|
|
N
|
3:ILE207
|
4.7
|
22.8
|
1.0
|
|
N
|
3:HIS189
|
4.8
|
22.6
|
1.0
|
|
CB
|
3:ASN187
|
4.8
|
22.9
|
1.0
|
|
CB
|
3:GLU193
|
4.8
|
21.4
|
1.0
|
|
N
|
3:ASP188
|
4.8
|
20.9
|
1.0
|
|
CA
|
3:ASN205
|
4.8
|
24.7
|
1.0
|
|
CA
|
3:ASN187
|
4.9
|
23.0
|
1.0
|
|
Calcium binding site 9 out
of 9 in 1rtm
Go back to
Calcium Binding Sites List in 1rtm
Calcium binding site 9 out
of 9 in the Trimeric Structure of A C-Type Mannose-Binding Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Trimeric Structure of A C-Type Mannose-Binding Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Ca3
b:25.2
occ:1.00
|
OE1
|
3:GLU165
|
2.5
|
22.5
|
1.0
|
|
OD2
|
3:ASP194
|
2.5
|
23.3
|
1.0
|
|
O
|
3:HOH333
|
2.6
|
34.3
|
1.0
|
|
OD1
|
3:ASP194
|
2.7
|
21.0
|
1.0
|
|
CG
|
3:ASP194
|
2.9
|
24.9
|
1.0
|
|
CD
|
3:GLU165
|
3.6
|
22.1
|
1.0
|
|
CA
|
3:CA1
|
4.0
|
22.0
|
1.0
|
|
CB
|
3:GLU165
|
4.2
|
20.1
|
1.0
|
|
OD1
|
3:ASP188
|
4.2
|
22.3
|
1.0
|
|
O
|
3:HOH235
|
4.3
|
23.2
|
1.0
|
|
CG
|
3:GLU165
|
4.3
|
22.3
|
1.0
|
|
CB
|
3:ASP194
|
4.4
|
24.2
|
1.0
|
|
O
|
3:ASP161
|
4.5
|
24.4
|
1.0
|
|
OE2
|
3:GLU165
|
4.6
|
21.9
|
1.0
|
|
CA
|
3:GLU165
|
4.6
|
24.9
|
1.0
|
|
O
|
3:HOH236
|
4.6
|
26.1
|
1.0
|
|
O
|
3:HOH334
|
4.7
|
38.2
|
1.0
|
|
OD2
|
3:ASP188
|
4.9
|
24.1
|
1.0
|
|
O
|
3:HOH299
|
4.9
|
40.4
|
1.0
|
|
OD2
|
3:ASP161
|
4.9
|
22.3
|
1.0
|
|
CG
|
3:ASP188
|
4.9
|
21.4
|
1.0
|
|
Reference:
W.I.Weis,
K.Drickamer.
Trimeric Structure of A C-Type Mannose-Binding Protein. Structure V. 2 1227 1994.
ISSN: ISSN 0969-2126
PubMed: 7704532
DOI: 10.1016/S0969-2126(94)00124-3
Page generated: Sat Dec 12 03:18:06 2020
|
