Atomistry » Calcium » PDB 1rpz-1s26 » 1rtp
Atomistry »
  Calcium »
    PDB 1rpz-1s26 »
      1rtp »

Calcium in PDB 1rtp: Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution

Protein crystallography data

The structure of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution, PDB code: 1rtp was solved by C.A.Mcphalen, A.R.Sielecki, B.D.Santarsiero, M.N.G.James, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.300, 55.000, 156.100, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Calcium Binding Sites:

The binding sites of Calcium atom in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution (pdb code 1rtp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution, PDB code: 1rtp:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 1 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Ca110

b:4.2
occ:1.00
 OD1 1:ASP51 2.1 6.4 1.0
O 1:PHE57 2.3 4.2 1.0
OD1 1:ASP53 2.3 6.8 1.0
OE1 1:GLU59 2.4 2.8 1.0
OE1 1:GLU62 2.5 2.6 1.0
OE2 1:GLU62 2.6 7.1 1.0
OG 1:SER55 2.7 6.3 1.0
CD 1:GLU62 2.9 2.0 1.0
CG 1:ASP51 3.3 7.8 1.0
CD 1:GLU59 3.3 2.0 1.0
CG 1:ASP53 3.4 8.5 1.0
C 1:PHE57 3.5 3.5 1.0
OE2 1:GLU59 3.6 5.7 1.0
CB 1:SER55 3.7 4.5 1.0
OD2 1:ASP53 3.9 6.4 1.0
N 1:SER55 4.0 6.2 1.0
CB 1:ASP51 4.1 7.8 1.0
CA 1:ASP51 4.1 6.0 1.0
N 1:ASP53 4.2 6.3 1.0
OD2 1:ASP51 4.2 6.6 1.0
C 1:ASP51 4.3 6.8 1.0
N 1:PHE57 4.3 4.7 1.0
CG 1:GLU62 4.3 2.0 1.0
N 1:GLU59 4.4 3.2 1.0
CA 1:ILE58 4.4 4.0 1.0
N 1:ILE58 4.4 4.0 1.0
CA 1:SER55 4.4 2.8 1.0
CA 1:PHE57 4.5 4.9 1.0
N 1:LYS54 4.5 5.1 1.0
O 1:HOH115 4.5 2.3 0.7
N 1:LYS52 4.5 10.1 1.0
CB 1:ASP53 4.5 5.8 1.0
O 1:HOH140 4.5 10.8 1.0
CA 1:ASP53 4.6 6.6 1.0
CG 1:GLU59 4.6 2.6 1.0
C 1:ASP53 4.7 7.3 1.0
N 1:GLY56 4.7 3.2 1.0
O 1:ASP51 4.8 9.2 1.0
C 1:ILE58 4.9 4.3 1.0
C 1:SER55 4.9 6.0 1.0

Calcium binding site 2 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 2 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Ca111

b:6.3
occ:1.00
 O 1:LYS96 2.2 5.2 1.0
OE1 1:GLU101 2.3 6.7 1.0
OD1 1:ASP90 2.3 9.3 1.0
O 1:HOH121 2.3 6.1 1.0
OD1 1:ASP94 2.3 9.9 1.0
OD1 1:ASP92 2.3 11.4 1.0
OE2 1:GLU101 2.5 6.4 1.0
CD 1:GLU101 2.8 4.4 1.0
CG 1:ASP94 3.3 8.1 1.0
C 1:LYS96 3.3 5.7 1.0
CG 1:ASP92 3.4 8.7 1.0
CG 1:ASP90 3.4 8.6 1.0
OD2 1:ASP94 3.7 11.9 1.0
OD2 1:ASP92 3.8 12.4 1.0
CA 1:ASP90 4.1 8.5 1.0
N 1:LYS96 4.1 6.4 1.0
CB 1:ASP90 4.2 8.1 1.0
O 1:HOH125 4.2 7.7 1.0
N 1:ILE97 4.2 3.9 1.0
OD2 1:ASP90 4.2 11.2 1.0
CG 1:GLU101 4.3 5.2 1.0
N 1:ASP94 4.3 12.4 1.0
CA 1:ILE97 4.3 5.4 1.0
CA 1:LYS96 4.3 6.4 1.0
N 1:ASP92 4.3 13.3 1.0
N 1:GLY98 4.4 5.1 1.0
N 1:LYS91 4.5 12.1 1.0
N 1:GLY93 4.6 14.8 1.0
CB 1:ASP94 4.6 11.3 1.0
CB 1:ASP92 4.6 9.5 1.0
C 1:ASP90 4.6 11.1 1.0
CA 1:ASP92 4.8 12.2 1.0
CB 1:LYS96 4.8 7.3 1.0
C 1:ILE97 4.8 4.5 1.0
C 1:ASP92 4.9 16.1 1.0
CA 1:ASP94 4.9 10.8 1.0
N 1:GLY95 4.9 10.4 1.0

Calcium binding site 3 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 3 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Ca110

b:7.5
occ:1.00
 O 2:PHE57 2.2 5.9 1.0
OD1 2:ASP53 2.2 11.8 1.0
OD1 2:ASP51 2.3 7.7 1.0
OE1 2:GLU59 2.3 12.1 1.0
OG 2:SER55 2.4 7.2 1.0
OE1 2:GLU62 2.4 11.0 1.0
OE2 2:GLU62 2.5 12.3 1.0
CD 2:GLU62 2.8 10.5 1.0
CG 2:ASP53 3.3 9.0 1.0
CD 2:GLU59 3.3 14.9 1.0
CG 2:ASP51 3.4 7.1 1.0
C 2:PHE57 3.4 5.0 1.0
CB 2:SER55 3.5 9.2 1.0
OE2 2:GLU59 3.5 8.0 1.0
OD2 2:ASP53 3.8 17.8 1.0
N 2:SER55 3.9 11.3 1.0
OD2 2:ASP51 4.1 13.3 1.0
N 2:ASP53 4.2 10.2 1.0
CA 2:ASP51 4.2 8.9 1.0
CA 2:SER55 4.2 8.9 1.0
CB 2:ASP51 4.3 9.5 1.0
CG 2:GLU62 4.3 10.9 1.0
CA 2:ILE58 4.3 4.1 1.0
N 2:GLU59 4.3 6.0 1.0
N 2:PHE57 4.3 9.4 1.0
N 2:ILE58 4.3 4.9 1.0
C 2:ASP51 4.4 7.6 1.0
CB 2:ASP53 4.4 14.1 1.0
N 2:LYS54 4.4 11.6 1.0
CA 2:PHE57 4.4 8.0 1.0
N 2:LYS52 4.5 8.9 1.0
CA 2:ASP53 4.6 11.2 1.0
O 2:HOH206 4.6 15.8 0.7
CG 2:GLU59 4.7 10.1 1.0
C 2:ASP53 4.7 12.9 1.0
N 2:GLY56 4.7 9.2 1.0
C 2:ILE58 4.8 4.4 1.0
C 2:SER55 4.9 11.4 1.0
C 2:LYS54 5.0 11.6 1.0
O 2:ASP51 5.0 9.6 1.0
CB 2:PHE57 5.0 11.6 1.0

Calcium binding site 4 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 4 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Ca111

b:11.1
occ:1.00
 O 2:HOH148 2.2 13.9 1.0
O 2:LYS96 2.3 7.1 1.0
OD1 2:ASP90 2.3 11.2 1.0
OD1 2:ASP92 2.4 15.1 1.0
OD1 2:ASP94 2.4 16.2 1.0
OE1 2:GLU101 2.5 10.6 1.0
OE2 2:GLU101 2.6 14.5 1.0
CD 2:GLU101 2.9 12.6 1.0
CG 2:ASP94 3.2 17.0 1.0
CG 2:ASP92 3.3 18.7 1.0
CG 2:ASP90 3.4 13.0 1.0
C 2:LYS96 3.5 8.0 1.0
OD2 2:ASP94 3.5 15.3 1.0
OD2 2:ASP92 3.8 22.8 1.0
CA 2:ASP90 4.1 12.6 1.0
N 2:LYS96 4.1 12.1 1.0
N 2:ASP94 4.2 15.8 1.0
CB 2:ASP90 4.2 5.4 1.0
N 2:ASP92 4.2 15.3 1.0
OD2 2:ASP90 4.3 12.5 1.0
N 2:ILE97 4.4 7.6 1.0
CA 2:LYS96 4.4 9.2 1.0
CG 2:GLU101 4.4 7.2 1.0
CB 2:ASP94 4.4 12.5 1.0
C 2:ASP90 4.4 14.2 1.0
CB 2:ASP92 4.4 17.9 1.0
CA 2:ILE97 4.5 8.6 1.0
N 2:GLY93 4.5 17.4 1.0
N 2:LYS91 4.5 15.5 1.0
CA 2:ASP92 4.6 16.4 1.0
N 2:GLY98 4.6 6.8 1.0
CA 2:ASP94 4.7 13.9 1.0
C 2:ASP92 4.7 16.4 1.0
CG 2:LYS96 4.8 9.8 1.0
N 2:GLY95 4.8 13.9 1.0
C 2:ASP94 4.9 16.0 1.0
C 2:ILE97 5.0 7.6 1.0

Calcium binding site 5 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 5 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Ca110

b:9.9
occ:1.00
 OD1 3:ASP53 2.3 15.1 1.0
O 3:PHE57 2.3 7.5 1.0
OD1 3:ASP51 2.3 14.2 1.0
OE1 3:GLU59 2.4 11.0 1.0
OG 3:SER55 2.5 11.4 1.0
OE1 3:GLU62 2.5 7.7 1.0
OE2 3:GLU62 2.6 12.6 1.0
CD 3:GLU62 2.9 9.6 1.0
CD 3:GLU59 3.3 11.7 1.0
CG 3:ASP53 3.4 12.8 1.0
CB 3:SER55 3.4 9.1 1.0
CG 3:ASP51 3.4 11.0 1.0
C 3:PHE57 3.6 7.1 1.0
OE2 3:GLU59 3.6 14.7 1.0
N 3:SER55 3.9 17.5 1.0
OD2 3:ASP53 4.0 17.9 1.0
N 3:ASP53 4.2 16.9 1.0
OD2 3:ASP51 4.2 11.5 1.0
CA 3:ASP51 4.2 10.8 1.0
CA 3:SER55 4.2 16.6 1.0
N 3:PHE57 4.3 8.3 1.0
CG 3:GLU62 4.3 9.8 1.0
CB 3:ASP51 4.3 8.5 1.0
C 3:ASP51 4.4 10.6 1.0
N 3:GLU59 4.4 8.2 1.0
N 3:ILE58 4.5 9.2 1.0
CA 3:ILE58 4.5 7.5 1.0
N 3:LYS54 4.5 16.8 1.0
CA 3:PHE57 4.5 8.6 1.0
N 3:LYS52 4.6 15.3 1.0
CB 3:ASP53 4.6 15.3 1.0
N 3:GLY56 4.6 12.6 1.0
CG 3:GLU59 4.7 10.4 1.0
O 3:HOH200 4.7 28.5 1.0
CA 3:ASP53 4.7 16.4 1.0
C 3:SER55 4.8 14.0 1.0
C 3:ASP53 4.8 18.4 1.0
O 3:ASP51 4.8 11.8 1.0
C 3:LYS54 5.0 20.8 1.0

Calcium binding site 6 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 6 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Ca111

b:11.4
occ:1.00
 OD1 3:ASP94 2.1 11.7 1.0
O 3:HOH145 2.2 12.6 1.0
OD1 3:ASP90 2.2 13.9 1.0
OE1 3:GLU101 2.3 9.1 1.0
OD1 3:ASP92 2.4 25.3 1.0
O 3:LYS96 2.5 9.4 1.0
OE2 3:GLU101 2.7 10.6 1.0
CD 3:GLU101 2.8 10.6 1.0
CG 3:ASP94 3.1 12.6 1.0
CG 3:ASP90 3.3 16.1 1.0
CG 3:ASP92 3.3 23.9 1.0
C 3:LYS96 3.5 11.5 1.0
OD2 3:ASP94 3.6 10.2 1.0
OD2 3:ASP92 3.8 24.4 1.0
CB 3:ASP90 4.1 16.5 1.0
CA 3:ASP90 4.1 19.1 1.0
O 3:HOH169 4.1 18.5 1.0
N 3:ASP94 4.1 17.1 1.0
OD2 3:ASP90 4.2 13.9 1.0
CG 3:GLU101 4.3 7.6 1.0
CA 3:ILE97 4.3 7.5 1.0
N 3:ILE97 4.3 10.9 1.0
N 3:LYS96 4.4 13.7 1.0
CB 3:ASP94 4.4 14.3 1.0
N 3:ASP92 4.4 21.3 1.0
CA 3:LYS96 4.5 11.0 1.0
CB 3:ASP92 4.6 24.8 1.0
C 3:ASP90 4.6 19.5 1.0
N 3:LYS91 4.6 21.4 1.0
N 3:GLY98 4.6 9.8 1.0
CA 3:ASP94 4.7 14.3 1.0
N 3:GLY93 4.7 20.3 1.0
C 3:ASP92 4.8 22.5 1.0
CA 3:ASP92 4.8 21.8 1.0
N 3:GLY95 4.9 16.2 1.0
CB 3:LYS96 4.9 14.7 1.0
C 3:ILE97 5.0 8.7 1.0

Reference:

C.A.Mcphalen, A.R.Sielecki, B.D.Santarsiero, M.N.James. Refined Crystal Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution. J.Mol.Biol. V. 235 718 1994.
ISSN: ISSN 0022-2836
PubMed: 8289291
DOI: 10.1006/JMBI.1994.1023
Page generated: Thu Jul 11 22:18:03 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy