Calcium in PDB 1s0n: Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift

All present enzymatic activity of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift:
2.7.7.7;

The structure of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift, PDB code: 1s0n was solved by H.Ling, F.Boudsocq, R.Woodgate, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	99.112, 102.660, 53.176, 90.00, 90.00, 90.00
R / Rfree (%)	23.8 / 27.5

The binding sites of Calcium atom in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift (pdb code 1s0n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift, PDB code: 1s0n:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:90.7 occ:1.00 O A:HOH813 2.1 44.2 1.0 O1A A:DCP804 2.2 58.7 1.0 OE2 A:GLU106 2.4 55.6 1.0 O A:HOH805 2.6 45.7 1.0 OD2 A:ASP7 2.8 50.8 1.0 PA A:DCP804 3.2 61.8 1.0 OD1 A:ASP7 3.3 48.8 1.0 CG A:ASP7 3.5 49.4 1.0 CA A:CA404 3.5 46.1 1.0 O2A A:DCP804 3.5 63.8 1.0 CD A:GLU106 3.5 55.5 1.0 O5' P:DG13 3.5 78.7 1.0 O5' A:DCP804 3.9 58.3 1.0 NZ A:LYS159 3.9 62.0 1.0 OD2 A:ASP105 3.9 49.4 1.0 CG A:GLU106 4.0 54.6 1.0 O1G A:DCP804 4.1 65.9 1.0 OD1 A:ASP105 4.1 53.3 1.0 C3' P:DG13 4.2 75.8 1.0 OP1 P:DG13 4.2 78.8 1.0 P P:DG13 4.4 78.8 1.0 CG A:ASP105 4.4 48.7 1.0 C5' P:DG13 4.5 76.7 1.0 O3A A:DCP804 4.5 61.7 1.0 OE1 A:GLU106 4.6 54.0 1.0 C5' A:DCP804 4.7 55.8 1.0 OP2 P:DG13 4.7 79.2 1.0 O2B A:DCP804 4.9 59.4 1.0 C4' P:DG13 4.9 76.0 1.0 CB A:ASP7 4.9 47.9 1.0 C2' P:DG13 5.0 76.5 1.0 O3' P:DG13 5.0 74.0 1.0

Calcium binding site 2 out of 3 in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca404 b:46.1 occ:1.00 O1G A:DCP804 2.2 65.9 1.0 OD1 A:ASP7 2.2 48.8 1.0 O A:PHE8 2.3 42.0 1.0 O1A A:DCP804 2.5 58.7 1.0 OD2 A:ASP105 2.5 49.4 1.0 O2B A:DCP804 2.5 59.4 1.0 CG A:ASP7 3.3 49.4 1.0 C A:PHE8 3.5 44.4 1.0 PB A:DCP804 3.5 58.5 1.0 CA A:CA403 3.5 90.7 1.0 PG A:DCP804 3.5 64.4 1.0 O3B A:DCP804 3.7 61.2 1.0 CG A:ASP105 3.7 48.7 1.0 PA A:DCP804 3.7 61.8 1.0 NZ A:LYS159 3.7 62.0 1.0 OD2 A:ASP7 3.8 50.8 1.0 O3A A:DCP804 3.9 61.7 1.0 O A:HOH813 4.0 44.2 1.0 O A:ASP7 4.2 47.1 1.0 C5' A:DCP804 4.2 55.8 1.0 C A:ASP7 4.2 47.3 1.0 O3G A:DCP804 4.3 63.0 1.0 O5' A:DCP804 4.3 58.3 1.0 N A:TYR10 4.3 48.1 1.0 N A:ASP9 4.3 45.6 1.0 N A:PHE8 4.4 46.9 1.0 CA A:ASP9 4.4 48.7 1.0 OD1 A:ASP105 4.4 53.3 1.0 CA A:PHE8 4.5 43.8 1.0 C A:ASP9 4.5 49.2 1.0 CB A:ASP7 4.6 47.9 1.0 O2G A:DCP804 4.6 62.4 1.0 CB A:ASP105 4.8 46.3 1.0 O1B A:DCP804 4.8 59.2 1.0 CE A:LYS159 4.8 63.0 1.0 N A:PHE11 4.8 49.6 1.0 CA A:ASP7 4.9 47.3 1.0 O2A A:DCP804 5.0 63.8 1.0 O A:ASP105 5.0 44.2 1.0 CB A:PHE8 5.0 40.9 1.0

Calcium binding site 3 out of 3 in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca405 b:74.5 occ:1.00 O A:HOH816 2.6 66.8 1.0 O A:ALA181 2.6 67.4 1.0 O A:ILE186 2.7 64.2 1.0 C A:ALA181 3.8 65.7 1.0 C A:ILE186 3.8 63.4 1.0 OP2 P:DC12 4.0 61.7 1.0 OP1 P:DC12 4.4 65.4 1.0 CA A:GLY187 4.6 67.5 1.0 CA A:ALA181 4.6 65.7 1.0 N A:GLY187 4.6 65.2 1.0 CB A:ALA181 4.7 65.2 1.0 N A:ASP182 4.8 64.5 1.0 P P:DC12 4.8 62.9 1.0 CA A:ILE186 4.8 60.9 1.0 CA A:ASP182 4.8 62.8 1.0 C A:GLY187 4.9 69.8 1.0 CB A:ILE186 4.9 59.0 1.0

H.Ling, F.Boudsocq, R.Woodgate, W.Yang. Snapshots of Replication Through An Abasic Lesion; Structural Basis For Base Substitutions and Frameshifts. Mol.Cell V. 13 751 2004.
ISSN: ISSN 1097-2765
PubMed: 15023344
DOI: 10.1016/S1097-2765(04)00101-7