Atomistry » Calcium » PDB 1s2n-1scn » 1s5l
Atomistry »
  Calcium »
    PDB 1s2n-1scn »
      1s5l »

Calcium in PDB 1s5l: Architecture of the Photosynthetic Oxygen Evolving Center

Protein crystallography data

The structure of Architecture of the Photosynthetic Oxygen Evolving Center, PDB code: 1s5l was solved by K.N.Ferreira, T.M.Iverson, K.Maghlaoui, J.Barber, S.Iwata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 134.992, 228.849, 309.940, 90.00, 90.00, 90.00
R / Rfree (%) 29.6 / 34.2

Other elements in 1s5l:

The structure of Architecture of the Photosynthetic Oxygen Evolving Center also contains other interesting chemical elements:

Magnesium (Mg) 72 atoms
Manganese (Mn) 8 atoms
Iron (Fe) 6 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Architecture of the Photosynthetic Oxygen Evolving Center (pdb code 1s5l). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Architecture of the Photosynthetic Oxygen Evolving Center, PDB code: 1s5l:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1s5l

Go back to Calcium Binding Sites List in 1s5l
Calcium binding site 1 out of 2 in the Architecture of the Photosynthetic Oxygen Evolving Center


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Architecture of the Photosynthetic Oxygen Evolving Center within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca347

b:69.6
occ:1.00
CA1 A:OEC347 0.0 69.6 1.0
OXT A:ALA344 2.0 76.6 1.0
O3 A:BCT346 2.3 70.8 1.0
O2 A:BCT346 2.3 70.9 1.0
C A:BCT346 2.3 71.1 1.0
O A:ALA344 2.4 78.5 1.0
O1 A:OEC347 2.5 69.5 1.0
O3 A:OEC347 2.5 68.3 1.0
C A:ALA344 2.5 79.7 1.0
O4 A:OEC347 2.5 71.9 1.0
MN1 A:OEC347 3.3 74.4 1.0
O1 A:BCT346 3.4 74.2 1.0
MN3 A:OEC347 3.4 68.5 1.0
MN2 A:OEC347 3.4 66.9 1.0
NE2 A:GLN165 3.6 57.1 1.0
OE2 A:GLU189 3.7 63.5 1.0
OD2 A:ASP342 3.8 83.0 1.0
MN4 A:OEC347 3.9 74.0 1.0
O2 A:OEC347 3.9 71.1 1.0
CA A:ALA344 4.0 79.4 1.0
CD A:GLU189 4.1 65.2 1.0
OE1 A:GLU189 4.1 68.1 1.0
NH2 C:ARG357 4.2 30.8 1.0
CD A:GLN165 4.6 54.5 1.0
CB A:ALA344 4.6 78.5 1.0
N A:ALA344 4.7 79.5 1.0
OE1 C:GLU354 4.9 45.6 1.0
CG A:ASP342 4.9 82.0 1.0

Calcium binding site 2 out of 2 in 1s5l

Go back to Calcium Binding Sites List in 1s5l
Calcium binding site 2 out of 2 in the Architecture of the Photosynthetic Oxygen Evolving Center


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Architecture of the Photosynthetic Oxygen Evolving Center within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca2347

b:74.0
occ:1.00
CA1 a:OEC2347 0.0 74.0 1.0
O3 a:BCT2346 2.2 72.6 1.0
O2 a:BCT2346 2.3 71.7 1.0
C a:BCT2346 2.3 73.2 1.0
O a:ALA2344 2.5 80.3 1.0
O1 a:OEC2347 2.5 69.7 1.0
O3 a:OEC2347 2.5 69.0 1.0
O4 a:OEC2347 2.5 70.9 1.0
C a:ALA2344 2.6 82.6 1.0
MN1 a:OEC2347 3.3 69.9 1.0
MN3 a:OEC2347 3.4 74.4 1.0
O1 a:BCT2346 3.4 76.0 1.0
MN2 a:OEC2347 3.4 74.0 1.0
NE2 a:GLN2165 3.6 75.0 1.0
OE2 a:GLU2189 3.7 69.7 1.0
OD2 a:ASP2342 3.8 81.3 1.0
MN4 a:OEC2347 4.0 75.4 1.0
O2 a:OEC2347 4.0 71.8 1.0
CA a:ALA2344 4.1 81.2 1.0
NH2 c:ARG2357 4.2 29.0 1.0
CD a:GLU2189 4.3 68.4 1.0
OE1 a:GLU2189 4.5 71.2 1.0
CD a:GLN2165 4.5 73.1 1.0
CB a:ALA2344 4.7 82.5 1.0
N a:ALA2344 4.8 80.6 1.0
OE1 c:GLU2354 4.8 67.3 1.0
CG a:ASP2342 4.9 81.7 1.0

Reference:

K.N.Ferreira, T.M.Iverson, K.Maghlaoui, J.Barber, S.Iwata. Architecture of the Photosynthetic Oxygen-Evolving Center Science V. 303 1831 2004.
ISSN: ISSN 0036-8075
PubMed: 14764885
DOI: 10.1126/SCIENCE.1093087
Page generated: Thu Jul 11 22:26:58 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy