Calcium in PDB 1s6i: CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd)

The binding sites of Calcium atom in the CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd) (pdb code 1s6i). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd), PDB code: 1s6i:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca189 b:0.0 occ:1.00 HG2 A:GLU31 1.7 0.0 1.0 HB2 A:ASN23 1.8 0.0 1.0 HA A:ASP20 2.2 0.0 1.0 HB3 A:ASN23 2.2 0.0 1.0 HB3 A:ASP20 2.3 0.0 1.0 O A:THR26 2.4 0.0 1.0 CB A:ASN23 2.4 0.0 1.0 CG A:GLU31 2.5 0.0 1.0 HB2 A:ASP20 2.7 0.0 1.0 HB2 A:GLU31 2.7 0.0 1.0 CB A:ASP20 2.7 0.0 1.0 CA A:ASP20 2.8 0.0 1.0 CB A:GLU31 2.9 0.0 1.0 OE2 A:GLU31 2.9 0.0 1.0 HB3 A:GLU31 2.9 0.0 1.0 H A:ASN23 3.0 0.0 1.0 CD A:GLU31 3.1 0.0 1.0 HA A:ILE27 3.2 0.0 1.0 CG A:ASN23 3.4 0.0 1.0 OD1 A:ASN23 3.4 0.0 1.0 HG3 A:GLU31 3.4 0.0 1.0 H A:THR28 3.6 0.0 1.0 C A:THR26 3.6 0.0 1.0 CA A:ASN23 3.6 0.0 1.0 N A:ASN23 3.6 0.0 1.0 C A:ASP20 3.7 0.0 1.0 H A:THR26 3.7 0.0 1.0 OD1 A:ASP22 3.8 0.0 1.0 H A:SER24 3.9 0.0 1.0 N A:ASP20 4.0 0.0 1.0 H A:ASP22 4.0 0.0 1.0 CG A:ASP20 4.2 0.0 1.0 CA A:ILE27 4.2 0.0 1.0 O A:ASP20 4.2 0.0 1.0 HA A:ASN23 4.2 0.0 1.0 OE1 A:GLU31 4.3 0.0 1.0 H A:GLY25 4.3 0.0 1.0 N A:ILE27 4.3 0.0 1.0 HG12 A:ILE27 4.4 0.0 1.0 CA A:GLU31 4.4 0.0 1.0 O A:ILE19 4.5 0.0 1.0 N A:THR28 4.5 0.0 1.0 N A:THR26 4.5 0.0 1.0 N A:THR21 4.5 0.0 1.0 H A:THR21 4.5 0.0 1.0 HG22 A:ILE19 4.6 0.0 1.0 H A:ASP20 4.6 0.0 1.0 C A:ILE19 4.6 0.0 1.0 ND2 A:ASN23 4.6 0.0 1.0 N A:SER24 4.6 0.0 1.0 H A:GLU31 4.7 0.0 1.0 CA A:THR26 4.7 0.0 1.0 C A:ASN23 4.7 0.0 1.0 HG1 A:THR26 4.7 0.0 1.0 OD1 A:ASP20 4.8 0.0 1.0 HA A:GLU31 4.8 0.0 1.0 N A:ASP22 4.9 0.0 1.0 C A:ASP22 4.9 0.0 1.0 OG1 A:THR28 4.9 0.0 1.0 C A:ILE27 4.9 0.0 1.0 HD21 A:ASN23 4.9 0.0 1.0 OD2 A:ASP20 5.0 0.0 1.0 N A:GLU31 5.0 0.0 1.0

Calcium binding site 2 out of 4 in the CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca190 b:0.0 occ:1.00 HG A:SER60 2.3 0.0 1.0 OE2 A:GLU67 2.5 0.0 1.0 OG A:SER60 2.5 0.0 1.0 HB3 A:ASP58 2.8 0.0 1.0 O A:THR62 2.8 0.0 1.0 CD A:GLU67 3.2 0.0 1.0 OE1 A:GLU67 3.2 0.0 1.0 O A:ASP58 3.3 0.0 1.0 OD2 A:ASP58 3.7 0.0 1.0 HB A:THR62 3.7 0.0 1.0 CB A:ASP58 3.7 0.0 1.0 CB A:SER60 3.7 0.0 1.0 CG A:ASP58 3.7 0.0 1.0 HB3 A:SER60 3.8 0.0 1.0 OD2 A:ASP64 3.9 0.0 1.0 H A:SER60 3.9 0.0 1.0 C A:THR62 3.9 0.0 1.0 C A:ASP58 4.1 0.0 1.0 OD1 A:ASP56 4.2 0.0 1.0 H A:THR62 4.2 0.0 1.0 HA A:ILE63 4.2 0.0 1.0 HB2 A:SER60 4.4 0.0 1.0 N A:SER60 4.4 0.0 1.0 HB2 A:ASP58 4.4 0.0 1.0 OD1 A:ASP58 4.5 0.0 1.0 CA A:ASP58 4.5 0.0 1.0 CB A:THR62 4.6 0.0 1.0 OD2 A:ASP56 4.6 0.0 1.0 CA A:SER60 4.6 0.0 1.0 H A:ASP64 4.7 0.0 1.0 CG A:GLU67 4.7 0.0 1.0 CA A:THR62 4.7 0.0 1.0 HG22 A:THR62 4.8 0.0 1.0 N A:THR62 4.8 0.0 1.0 CG A:ASP56 4.8 0.0 1.0 CG A:ASP64 4.9 0.0 1.0 H A:ASP58 4.9 0.0 1.0 N A:ILE63 4.9 0.0 1.0 HG3 A:GLU67 4.9 0.0 1.0

Calcium binding site 3 out of 4 in the CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca191 b:0.0 occ:1.00 HB3 A:ASP94 2.1 0.0 1.0 O A:TYR98 2.4 0.0 1.0 OG A:SER96 2.8 0.0 1.0 HG A:SER96 2.9 0.0 1.0 OE1 A:GLU103 3.0 0.0 1.0 H A:SER96 3.2 0.0 1.0 CB A:ASP94 3.2 0.0 1.0 HD1 A:TYR98 3.2 0.0 1.0 H A:TYR98 3.5 0.0 1.0 H A:ASP94 3.5 0.0 1.0 H A:GLY95 3.6 0.0 1.0 C A:TYR98 3.6 0.0 1.0 OE2 A:GLU103 3.6 0.0 1.0 HB2 A:ASP94 3.7 0.0 1.0 CD A:GLU103 3.7 0.0 1.0 OD2 A:ASP94 3.7 0.0 1.0 HA A:ILE99 3.7 0.0 1.0 N A:GLY95 3.9 0.0 1.0 N A:SER96 3.9 0.0 1.0 CD1 A:TYR98 3.9 0.0 1.0 HE1 A:TYR98 3.9 0.0 1.0 CB A:SER96 3.9 0.0 1.0 CG A:ASP94 3.9 0.0 1.0 H A:GLY97 4.0 0.0 1.0 HB3 A:SER96 4.0 0.0 1.0 CA A:ASP94 4.0 0.0 1.0 OD1 A:ASP92 4.0 0.0 1.0 N A:ASP94 4.1 0.0 1.0 C A:ASP94 4.1 0.0 1.0 HA A:ASP92 4.2 0.0 1.0 N A:TYR98 4.3 0.0 1.0 CE1 A:TYR98 4.3 0.0 1.0 HG12 A:ILE99 4.3 0.0 1.0 CA A:SER96 4.5 0.0 1.0 CA A:TYR98 4.5 0.0 1.0 N A:ILE99 4.5 0.0 1.0 CA A:ILE99 4.6 0.0 1.0 HA2 A:GLY95 4.6 0.0 1.0 CA A:GLY95 4.7 0.0 1.0 N A:GLY97 4.7 0.0 1.0 C A:GLY95 4.7 0.0 1.0 HB2 A:SER96 4.8 0.0 1.0 H A:THR100 4.8 0.0 1.0 C A:ASP92 4.9 0.0 1.0 CG A:TYR98 4.9 0.0 1.0 O A:ASP94 4.9 0.0 1.0 CA A:ASP92 4.9 0.0 1.0 HG13 A:ILE99 5.0 0.0 1.0 HA A:ASP94 5.0 0.0 1.0

Calcium binding site 4 out of 4 in the CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of CA2+-Regulatory Region (Cld) From Soybean Calcium-Dependent Protein Kinase-Alpha (Cdpk) in the Presence of CA2+ and the Junction Domain (Jd) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca192 b:0.0 occ:1.00 H A:GLN132 1.8 0.0 1.0 HG2 A:GLN132 2.0 0.0 1.0 OD1 A:ASP126 2.2 0.0 1.0 OE2 A:GLU137 2.4 0.0 1.0 HG3 A:GLN132 2.5 0.0 1.0 CG A:GLN132 2.6 0.0 1.0 N A:GLN132 2.7 0.0 1.0 OD1 A:ASP128 2.7 0.0 1.0 HD21 A:ASN129 2.8 0.0 1.0 O A:GLN132 2.8 0.0 1.0 H A:ASN129 2.8 0.0 1.0 H A:ASP130 3.0 0.0 1.0 H A:GLY131 3.0 0.0 1.0 HB2 A:ASP130 3.1 0.0 1.0 CD A:GLU137 3.1 0.0 1.0 N A:ASP130 3.1 0.0 1.0 OE1 A:GLU137 3.2 0.0 1.0 N A:GLY131 3.2 0.0 1.0 CA A:GLN132 3.3 0.0 1.0 C A:GLN132 3.3 0.0 1.0 C A:ASP130 3.4 0.0 1.0 CB A:GLN132 3.4 0.0 1.0 CG A:ASP126 3.4 0.0 1.0 HA A:ASP126 3.4 0.0 1.0 CA A:ASP130 3.5 0.0 1.0 ND2 A:ASN129 3.5 0.0 1.0 H A:ASP128 3.6 0.0 1.0 N A:ASN129 3.7 0.0 1.0 C A:ASN129 3.7 0.0 1.0 HD22 A:ASN129 3.7 0.0 1.0 HB3 A:GLN132 3.7 0.0 1.0 C A:GLY131 3.8 0.0 1.0 CB A:ASP130 3.8 0.0 1.0 CD A:GLN132 3.9 0.0 1.0 CG A:ASP128 3.9 0.0 1.0 CA A:GLY131 3.9 0.0 1.0 HB2 A:ASP126 4.0 0.0 1.0 CB A:ASP126 4.1 0.0 1.0 O A:ASP130 4.1 0.0 1.0 HA2 A:GLY131 4.2 0.0 1.0 CA A:ASP126 4.2 0.0 1.0 CA A:ASN129 4.2 0.0 1.0 HA A:GLN132 4.3 0.0 1.0 HB2 A:GLN132 4.3 0.0 1.0 HE21 A:GLN132 4.4 0.0 1.0 H A:GLN127 4.4 0.0 1.0 HB3 A:ASP130 4.4 0.0 1.0 N A:ILE133 4.4 0.0 1.0 OD2 A:ASP126 4.4 0.0 1.0 O A:ASN129 4.5 0.0 1.0 OD2 A:ASP128 4.5 0.0 1.0 N A:ASP128 4.5 0.0 1.0 CG A:GLU137 4.6 0.0 1.0 HA A:ASP130 4.6 0.0 1.0 NE2 A:GLN132 4.6 0.0 1.0 OE1 A:GLN132 4.6 0.0 1.0 HA A:ILE133 4.6 0.0 1.0 CG A:ASN129 4.7 0.0 1.0 C A:ASP128 4.7 0.0 1.0 HG2 A:GLU137 4.8 0.0 1.0 N A:GLN127 4.8 0.0 1.0 C A:ASP126 4.8 0.0 1.0 O A:GLY131 4.9 0.0 1.0 CG A:ASP130 4.9 0.0 1.0 HA3 A:GLY131 4.9 0.0 1.0 CA A:ASP128 5.0 0.0 1.0 H A:ILE133 5.0 0.0 1.0

A.M.Weljie, H.J.Vogel. Unexpected Structure of the CA2+-Regulatory Region From Soybean Calcium-Dependent Protein Kinase-Alpha J.Biol.Chem. V. 279 35494 2004.
ISSN: ISSN 0021-9258
PubMed: 15155727
DOI: 10.1074/JBC.M311520200