Calcium in PDB 1sac: The Structure of Pentameric Human Serum Amyloid P Component
Protein crystallography data
The structure of The Structure of Pentameric Human Serum Amyloid P Component, PDB code: 1sac
was solved by
H.E.White,
J.Emsley,
B.P.O'hara,
G.Oliva,
N.Srinivasan,
I.J.Tickle,
T.L.Blundell,
M.B.Pepys,
S.P.Wood,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.900,
99.300,
96.700,
90.00,
95.90,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Calcium Binding Sites:
The binding sites of Calcium atom in the The Structure of Pentameric Human Serum Amyloid P Component
(pdb code 1sac). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
The Structure of Pentameric Human Serum Amyloid P Component, PDB code: 1sac:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 1 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca205
b:14.2
occ:1.00
|
O
|
A:GLN137
|
2.5
|
20.0
|
1.0
|
OD1
|
A:ASN59
|
2.5
|
18.1
|
1.0
|
OD1
|
A:ASP138
|
2.5
|
18.5
|
1.0
|
OE2
|
A:GLU136
|
2.6
|
17.2
|
1.0
|
OD1
|
A:ASP58
|
2.7
|
21.4
|
1.0
|
O
|
A:ACY300
|
2.7
|
25.0
|
1.0
|
OD2
|
A:ASP58
|
2.8
|
23.0
|
1.0
|
OE1
|
A:GLU136
|
2.8
|
17.0
|
1.0
|
CG
|
A:ASP58
|
3.0
|
20.4
|
1.0
|
CD
|
A:GLU136
|
3.1
|
16.4
|
1.0
|
C
|
A:ACY300
|
3.3
|
24.6
|
1.0
|
CG
|
A:ASN59
|
3.4
|
16.8
|
1.0
|
ND2
|
A:ASN59
|
3.6
|
18.2
|
1.0
|
C
|
A:GLN137
|
3.6
|
18.2
|
1.0
|
CG
|
A:ASP138
|
3.8
|
18.1
|
1.0
|
CA
|
A:ASP138
|
3.9
|
19.1
|
1.0
|
OXT
|
A:ACY300
|
4.0
|
23.8
|
1.0
|
CA
|
A:CA206
|
4.0
|
21.4
|
1.0
|
N
|
A:ASP138
|
4.2
|
19.2
|
1.0
|
CH3
|
A:ACY300
|
4.2
|
25.3
|
1.0
|
N
|
A:ASN59
|
4.5
|
16.5
|
1.0
|
CB
|
A:ASP138
|
4.5
|
18.3
|
1.0
|
CB
|
A:ASP58
|
4.6
|
19.5
|
1.0
|
CG
|
A:GLU136
|
4.6
|
16.0
|
1.0
|
CB
|
A:ASN59
|
4.7
|
16.6
|
1.0
|
OD2
|
A:ASP138
|
4.7
|
21.8
|
1.0
|
CA
|
A:GLN137
|
4.8
|
16.8
|
1.0
|
N
|
A:GLN137
|
4.8
|
15.7
|
1.0
|
ND2
|
A:ASN53
|
4.9
|
12.4
|
1.0
|
CA
|
A:ASN59
|
4.9
|
15.7
|
1.0
|
OD1
|
A:ASN53
|
5.0
|
15.0
|
1.0
|
|
Calcium binding site 2 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 2 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca206
b:21.4
occ:1.00
|
OE1
|
A:GLU136
|
2.4
|
17.0
|
1.0
|
OE1
|
A:GLN148
|
2.6
|
19.6
|
1.0
|
OXT
|
A:ACY300
|
2.7
|
23.8
|
1.0
|
OD2
|
A:ASP138
|
2.7
|
21.8
|
1.0
|
OD1
|
A:ASP138
|
2.8
|
18.5
|
1.0
|
CG
|
A:ASP138
|
3.0
|
18.1
|
1.0
|
C
|
A:ACY300
|
3.5
|
24.6
|
1.0
|
CD
|
A:GLN148
|
3.5
|
17.5
|
1.0
|
CD
|
A:GLU136
|
3.7
|
16.4
|
1.0
|
O
|
A:ACY300
|
3.8
|
25.0
|
1.0
|
NE2
|
A:GLN148
|
3.9
|
19.5
|
1.0
|
CA
|
A:CA205
|
4.0
|
14.2
|
1.0
|
CB
|
A:ASP145
|
4.2
|
24.2
|
1.0
|
CB
|
A:ASP138
|
4.4
|
18.3
|
1.0
|
CB
|
A:GLU136
|
4.4
|
15.3
|
1.0
|
O
|
A:GLU136
|
4.4
|
14.8
|
1.0
|
CG
|
A:GLU136
|
4.5
|
16.0
|
1.0
|
OE2
|
A:GLU136
|
4.6
|
17.2
|
1.0
|
O
|
A:GLN137
|
4.6
|
20.0
|
1.0
|
O
|
A:LYS143
|
4.7
|
21.9
|
1.0
|
CG
|
A:GLN148
|
4.7
|
17.8
|
1.0
|
OD2
|
A:ASP145
|
4.8
|
28.4
|
1.0
|
CH3
|
A:ACY300
|
4.8
|
25.3
|
1.0
|
C
|
A:GLU136
|
4.8
|
15.9
|
1.0
|
C
|
A:GLN137
|
4.8
|
18.2
|
1.0
|
N
|
A:ASP138
|
4.9
|
19.2
|
1.0
|
CA
|
A:ASP138
|
4.9
|
19.1
|
1.0
|
|
Calcium binding site 3 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 3 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca205
b:22.8
occ:1.00
|
O
|
B:GLN137
|
2.5
|
14.5
|
1.0
|
OD1
|
B:ASN59
|
2.5
|
16.2
|
1.0
|
OD1
|
B:ASP138
|
2.5
|
17.0
|
1.0
|
OD1
|
B:ASP58
|
2.6
|
22.7
|
1.0
|
OE2
|
B:GLU136
|
2.6
|
16.0
|
1.0
|
O
|
B:ACY300
|
2.7
|
22.4
|
1.0
|
OD2
|
B:ASP58
|
2.8
|
22.4
|
1.0
|
OE1
|
B:GLU136
|
2.8
|
15.3
|
1.0
|
CG
|
B:ASP58
|
3.0
|
23.6
|
1.0
|
CD
|
B:GLU136
|
3.1
|
14.4
|
1.0
|
C
|
B:ACY300
|
3.3
|
20.8
|
1.0
|
CG
|
B:ASN59
|
3.5
|
17.1
|
1.0
|
OXT
|
B:ACY300
|
3.6
|
19.4
|
1.0
|
C
|
B:GLN137
|
3.7
|
14.6
|
1.0
|
CG
|
B:ASP138
|
3.8
|
16.7
|
1.0
|
ND2
|
B:ASN59
|
3.8
|
17.1
|
1.0
|
CA
|
B:ASP138
|
3.9
|
16.2
|
1.0
|
CA
|
B:CA206
|
4.0
|
24.5
|
1.0
|
N
|
B:ASP138
|
4.3
|
16.1
|
1.0
|
CB
|
B:ASP138
|
4.5
|
15.8
|
1.0
|
N
|
B:ASN59
|
4.5
|
20.5
|
1.0
|
CH3
|
B:ACY300
|
4.5
|
20.9
|
1.0
|
CB
|
B:ASP58
|
4.6
|
21.6
|
1.0
|
CG
|
B:GLU136
|
4.7
|
12.2
|
1.0
|
CB
|
B:ASN59
|
4.7
|
17.8
|
1.0
|
OD2
|
B:ASP138
|
4.8
|
18.4
|
1.0
|
ND2
|
B:ASN53
|
4.8
|
14.5
|
1.0
|
N
|
B:GLN137
|
4.8
|
12.3
|
1.0
|
CA
|
B:GLN137
|
4.8
|
13.6
|
1.0
|
CD2
|
B:LEU62
|
4.8
|
8.0
|
1.0
|
OD1
|
B:ASN53
|
4.9
|
15.2
|
1.0
|
CA
|
B:ASN59
|
4.9
|
18.2
|
1.0
|
|
Calcium binding site 4 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 4 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca206
b:24.5
occ:1.00
|
OE1
|
B:GLU136
|
2.4
|
15.3
|
1.0
|
OE1
|
B:GLN148
|
2.6
|
16.5
|
1.0
|
OD1
|
B:ASP138
|
2.6
|
17.0
|
1.0
|
OXT
|
B:ACY300
|
2.7
|
19.4
|
1.0
|
OD2
|
B:ASP138
|
2.8
|
18.4
|
1.0
|
CG
|
B:ASP138
|
3.0
|
16.7
|
1.0
|
CD
|
B:GLU136
|
3.6
|
14.4
|
1.0
|
CD
|
B:GLN148
|
3.7
|
16.1
|
1.0
|
C
|
B:ACY300
|
3.7
|
20.8
|
1.0
|
CA
|
B:CA205
|
4.0
|
22.8
|
1.0
|
O
|
B:GLU136
|
4.0
|
13.8
|
1.0
|
CB
|
B:ASP145
|
4.1
|
19.2
|
1.0
|
NE2
|
B:GLN148
|
4.1
|
16.4
|
1.0
|
CB
|
B:GLU136
|
4.1
|
12.0
|
1.0
|
O
|
B:ACY300
|
4.3
|
22.4
|
1.0
|
CB
|
B:ASP138
|
4.3
|
15.8
|
1.0
|
CG
|
B:GLU136
|
4.3
|
12.2
|
1.0
|
OE2
|
B:GLU136
|
4.4
|
16.0
|
1.0
|
O
|
B:GLN137
|
4.5
|
14.5
|
1.0
|
O
|
B:LYS143
|
4.5
|
21.2
|
1.0
|
OD2
|
B:ASP145
|
4.5
|
20.7
|
1.0
|
C
|
B:GLU136
|
4.6
|
13.1
|
1.0
|
C
|
B:GLN137
|
4.6
|
14.6
|
1.0
|
CH3
|
B:ACY300
|
4.8
|
20.9
|
1.0
|
CG
|
B:ASP145
|
4.8
|
20.8
|
1.0
|
N
|
B:ASP138
|
4.8
|
16.1
|
1.0
|
CA
|
B:ASP138
|
4.9
|
16.2
|
1.0
|
CG
|
B:GLN148
|
5.0
|
15.5
|
1.0
|
|
Calcium binding site 5 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 5 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca205
b:18.8
occ:1.00
|
O
|
C:GLN137
|
2.5
|
13.7
|
1.0
|
OE2
|
C:GLU136
|
2.5
|
15.7
|
1.0
|
OD1
|
C:ASP138
|
2.5
|
19.0
|
1.0
|
OD1
|
C:ASN59
|
2.6
|
18.2
|
1.0
|
OD2
|
C:ASP58
|
2.7
|
17.0
|
1.0
|
OD1
|
C:ASP58
|
2.7
|
18.4
|
1.0
|
OE1
|
C:GLU136
|
2.8
|
15.3
|
1.0
|
CG
|
C:ASP58
|
3.0
|
17.5
|
1.0
|
CD
|
C:GLU136
|
3.0
|
13.2
|
1.0
|
CG
|
C:ASN59
|
3.5
|
16.5
|
1.0
|
C
|
C:GLN137
|
3.7
|
13.4
|
1.0
|
ND2
|
C:ASN59
|
3.7
|
15.5
|
1.0
|
CG
|
C:ASP138
|
3.8
|
18.2
|
1.0
|
CA
|
C:CA206
|
3.9
|
20.4
|
1.0
|
CA
|
C:ASP138
|
4.0
|
15.7
|
1.0
|
N
|
C:ASP138
|
4.3
|
13.7
|
1.0
|
CB
|
C:ASP58
|
4.5
|
18.0
|
1.0
|
N
|
C:ASN59
|
4.5
|
16.0
|
1.0
|
CB
|
C:ASP138
|
4.5
|
15.7
|
1.0
|
CG
|
C:GLU136
|
4.5
|
12.8
|
1.0
|
CB
|
C:ASN59
|
4.7
|
17.0
|
1.0
|
OD2
|
C:ASP138
|
4.7
|
19.4
|
1.0
|
CA
|
C:GLN137
|
4.9
|
12.7
|
1.0
|
N
|
C:GLN137
|
4.9
|
12.1
|
1.0
|
CD2
|
C:LEU62
|
4.9
|
9.5
|
1.0
|
OD1
|
C:ASN53
|
4.9
|
12.1
|
1.0
|
ND2
|
C:ASN53
|
4.9
|
15.1
|
1.0
|
CA
|
C:ASN59
|
5.0
|
16.0
|
1.0
|
|
Calcium binding site 6 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 6 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca206
b:20.4
occ:1.00
|
OE1
|
C:GLN148
|
2.5
|
15.2
|
1.0
|
OE1
|
C:GLU136
|
2.5
|
15.3
|
1.0
|
OD1
|
C:ASP138
|
2.6
|
19.0
|
1.0
|
OD2
|
C:ASP138
|
2.7
|
19.4
|
1.0
|
CG
|
C:ASP138
|
2.9
|
18.2
|
1.0
|
CD
|
C:GLN148
|
3.5
|
16.1
|
1.0
|
CD
|
C:GLU136
|
3.7
|
13.2
|
1.0
|
NE2
|
C:GLN148
|
3.9
|
17.4
|
1.0
|
CA
|
C:CA205
|
3.9
|
18.8
|
1.0
|
CB
|
C:ASP145
|
4.1
|
20.9
|
1.0
|
CB
|
C:ASP138
|
4.2
|
15.7
|
1.0
|
O
|
C:GLU136
|
4.3
|
14.6
|
1.0
|
OD2
|
C:ASP145
|
4.4
|
22.5
|
1.0
|
O
|
C:GLN137
|
4.6
|
13.7
|
1.0
|
CG
|
C:GLU136
|
4.6
|
12.8
|
1.0
|
OE2
|
C:GLU136
|
4.6
|
15.7
|
1.0
|
CB
|
C:GLU136
|
4.6
|
13.1
|
1.0
|
O
|
C:LYS143
|
4.7
|
22.7
|
1.0
|
CG
|
C:ASP145
|
4.8
|
21.7
|
1.0
|
CG
|
C:GLN148
|
4.8
|
16.6
|
1.0
|
CA
|
C:ASP138
|
4.9
|
15.7
|
1.0
|
C
|
C:GLN137
|
4.9
|
13.4
|
1.0
|
C
|
C:GLU136
|
4.9
|
11.6
|
1.0
|
|
Calcium binding site 7 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 7 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca205
b:27.6
occ:1.00
|
OD1
|
D:ASP138
|
2.3
|
23.4
|
1.0
|
O
|
D:GLN137
|
2.4
|
18.9
|
1.0
|
OD1
|
D:ASP58
|
2.5
|
24.4
|
1.0
|
OE2
|
D:GLU136
|
2.6
|
19.3
|
1.0
|
OE1
|
D:GLU136
|
2.7
|
19.3
|
1.0
|
O
|
D:ACY300
|
2.7
|
33.2
|
1.0
|
OD1
|
D:ASN59
|
2.7
|
21.1
|
1.0
|
OD2
|
D:ASP58
|
2.8
|
23.1
|
1.0
|
CG
|
D:ASP58
|
3.0
|
24.0
|
1.0
|
CD
|
D:GLU136
|
3.0
|
17.9
|
1.0
|
CG
|
D:ASN59
|
3.4
|
21.0
|
1.0
|
ND2
|
D:ASN59
|
3.5
|
22.3
|
1.0
|
C
|
D:ACY300
|
3.5
|
34.6
|
1.0
|
C
|
D:GLN137
|
3.5
|
20.0
|
1.0
|
CG
|
D:ASP138
|
3.6
|
24.7
|
1.0
|
OXT
|
D:ACY300
|
3.8
|
34.9
|
1.0
|
CA
|
D:ASP138
|
3.9
|
22.8
|
1.0
|
CA
|
D:CA206
|
4.1
|
27.8
|
1.0
|
N
|
D:ASP138
|
4.2
|
20.9
|
1.0
|
CB
|
D:ASP138
|
4.4
|
24.4
|
1.0
|
N
|
D:ASN59
|
4.4
|
23.6
|
1.0
|
CB
|
D:ASP58
|
4.5
|
24.3
|
1.0
|
OD2
|
D:ASP138
|
4.5
|
27.0
|
1.0
|
CG
|
D:GLU136
|
4.5
|
16.9
|
1.0
|
ND2
|
D:ASN53
|
4.6
|
19.8
|
1.0
|
CH3
|
D:ACY300
|
4.7
|
35.1
|
1.0
|
CB
|
D:ASN59
|
4.7
|
20.8
|
1.0
|
CA
|
D:GLN137
|
4.8
|
19.1
|
1.0
|
N
|
D:GLN137
|
4.8
|
18.2
|
1.0
|
CA
|
D:ASN59
|
4.9
|
22.9
|
1.0
|
CD2
|
D:LEU62
|
4.9
|
13.1
|
1.0
|
|
Calcium binding site 8 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 8 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca206
b:27.8
occ:1.00
|
OE1
|
D:GLN148
|
2.5
|
19.6
|
1.0
|
OE1
|
D:GLU136
|
2.6
|
19.3
|
1.0
|
OD2
|
D:ASP138
|
2.6
|
27.0
|
1.0
|
OXT
|
D:ACY300
|
2.7
|
34.9
|
1.0
|
OD1
|
D:ASP138
|
2.9
|
23.4
|
1.0
|
CG
|
D:ASP138
|
2.9
|
24.7
|
1.0
|
CD
|
D:GLN148
|
3.6
|
18.6
|
1.0
|
C
|
D:ACY300
|
3.7
|
34.6
|
1.0
|
CD
|
D:GLU136
|
3.8
|
17.9
|
1.0
|
O
|
D:ACY300
|
4.0
|
33.2
|
1.0
|
NE2
|
D:GLN148
|
4.0
|
22.3
|
1.0
|
CA
|
D:CA205
|
4.1
|
27.6
|
1.0
|
CB
|
D:ASP145
|
4.1
|
22.9
|
1.0
|
CB
|
D:ASP138
|
4.2
|
24.4
|
1.0
|
O
|
D:GLU136
|
4.3
|
18.1
|
1.0
|
O
|
D:GLN137
|
4.4
|
18.9
|
1.0
|
CB
|
D:GLU136
|
4.5
|
16.3
|
1.0
|
OD2
|
D:ASP145
|
4.5
|
22.8
|
1.0
|
CG
|
D:GLU136
|
4.5
|
16.9
|
1.0
|
O
|
D:LYS143
|
4.6
|
25.5
|
1.0
|
OE2
|
D:GLU136
|
4.7
|
19.3
|
1.0
|
C
|
D:GLN137
|
4.8
|
20.0
|
1.0
|
C
|
D:GLU136
|
4.8
|
17.7
|
1.0
|
CG
|
D:ASP145
|
4.9
|
23.1
|
1.0
|
CG
|
D:GLN148
|
4.9
|
18.3
|
1.0
|
CA
|
D:ASP138
|
5.0
|
22.8
|
1.0
|
|
Calcium binding site 9 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 9 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca205
b:20.6
occ:1.00
|
O
|
E:GLN137
|
2.4
|
18.2
|
1.0
|
OD1
|
E:ASP58
|
2.5
|
21.6
|
1.0
|
OD1
|
E:ASP138
|
2.5
|
20.0
|
1.0
|
OE2
|
E:GLU136
|
2.5
|
17.8
|
1.0
|
O
|
E:ACY300
|
2.6
|
18.8
|
1.0
|
OD1
|
E:ASN59
|
2.6
|
14.2
|
1.0
|
OE1
|
E:GLU136
|
2.9
|
18.2
|
1.0
|
OD2
|
E:ASP58
|
2.9
|
18.9
|
1.0
|
CG
|
E:ASP58
|
3.1
|
19.6
|
1.0
|
CD
|
E:GLU136
|
3.1
|
17.9
|
1.0
|
CG
|
E:ASN59
|
3.5
|
13.8
|
1.0
|
C
|
E:GLN137
|
3.6
|
18.6
|
1.0
|
C
|
E:ACY300
|
3.6
|
19.7
|
1.0
|
CG
|
E:ASP138
|
3.8
|
22.9
|
1.0
|
ND2
|
E:ASN59
|
3.8
|
12.9
|
1.0
|
CA
|
E:ASP138
|
3.9
|
21.7
|
1.0
|
OXT
|
E:ACY300
|
4.0
|
23.5
|
1.0
|
CA
|
E:CA206
|
4.1
|
25.2
|
1.0
|
N
|
E:ASP138
|
4.2
|
20.8
|
1.0
|
CB
|
E:ASP138
|
4.4
|
22.0
|
1.0
|
N
|
E:ASN59
|
4.5
|
16.5
|
1.0
|
CB
|
E:ASP58
|
4.6
|
18.4
|
1.0
|
CG
|
E:GLU136
|
4.6
|
15.5
|
1.0
|
CH3
|
E:ACY300
|
4.7
|
20.4
|
1.0
|
OD2
|
E:ASP138
|
4.7
|
23.5
|
1.0
|
CB
|
E:ASN59
|
4.8
|
13.6
|
1.0
|
ND2
|
E:ASN53
|
4.8
|
18.4
|
1.0
|
CA
|
E:GLN137
|
4.8
|
19.1
|
1.0
|
N
|
E:GLN137
|
4.9
|
17.8
|
1.0
|
CA
|
E:ASN59
|
5.0
|
15.3
|
1.0
|
|
Calcium binding site 10 out
of 10 in 1sac
Go back to
Calcium Binding Sites List in 1sac
Calcium binding site 10 out
of 10 in the The Structure of Pentameric Human Serum Amyloid P Component
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of The Structure of Pentameric Human Serum Amyloid P Component within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca206
b:25.2
occ:1.00
|
OE1
|
E:GLU136
|
2.4
|
18.2
|
1.0
|
OE1
|
E:GLN148
|
2.6
|
18.1
|
1.0
|
OXT
|
E:ACY300
|
2.7
|
23.5
|
1.0
|
OD2
|
E:ASP138
|
2.7
|
23.5
|
1.0
|
OD1
|
E:ASP138
|
2.8
|
20.0
|
1.0
|
CG
|
E:ASP138
|
2.9
|
22.9
|
1.0
|
CD
|
E:GLN148
|
3.6
|
17.5
|
1.0
|
C
|
E:ACY300
|
3.7
|
19.7
|
1.0
|
CD
|
E:GLU136
|
3.7
|
17.9
|
1.0
|
O
|
E:ACY300
|
3.8
|
18.8
|
1.0
|
NE2
|
E:GLN148
|
3.9
|
17.1
|
1.0
|
CB
|
E:ASP145
|
4.0
|
20.2
|
1.0
|
CA
|
E:CA205
|
4.1
|
20.6
|
1.0
|
CB
|
E:ASP138
|
4.2
|
22.0
|
1.0
|
O
|
E:GLU136
|
4.2
|
18.1
|
1.0
|
OD2
|
E:ASP145
|
4.4
|
24.0
|
1.0
|
CB
|
E:GLU136
|
4.5
|
14.2
|
1.0
|
O
|
E:GLN137
|
4.6
|
18.2
|
1.0
|
CG
|
E:GLU136
|
4.6
|
15.5
|
1.0
|
OE2
|
E:GLU136
|
4.6
|
17.8
|
1.0
|
O
|
E:LYS143
|
4.7
|
23.4
|
1.0
|
CG
|
E:ASP145
|
4.7
|
22.0
|
1.0
|
C
|
E:GLU136
|
4.8
|
17.5
|
1.0
|
CA
|
E:ASP138
|
4.9
|
21.7
|
1.0
|
C
|
E:GLN137
|
4.9
|
18.6
|
1.0
|
CG
|
E:GLN148
|
4.9
|
15.4
|
1.0
|
|
Reference:
J.Emsley,
H.E.White,
B.P.O'hara,
G.Oliva,
N.Srinivasan,
I.J.Tickle,
T.L.Blundell,
M.B.Pepys,
S.P.Wood.
Structure of Pentameric Human Serum Amyloid P Component. Nature V. 367 338 1994.
ISSN: ISSN 0028-0836
PubMed: 8114934
DOI: 10.1038/367338A0
Page generated: Thu Jul 11 22:29:44 2024
|