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Calcium in PDB 1sdd: Crystal Structure of Bovine Factor Vai

Protein crystallography data

The structure of Crystal Structure of Bovine Factor Vai, PDB code: 1sdd was solved by T.E.Adams, M.F.Hockin, K.G.Mann, S.J.Everse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.370, 86.560, 229.200, 90.00, 90.00, 90.00
R / Rfree (%) 25.2 / 29.6

Other elements in 1sdd:

The structure of Crystal Structure of Bovine Factor Vai also contains other interesting chemical elements:

Copper (Cu) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Bovine Factor Vai (pdb code 1sdd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Bovine Factor Vai, PDB code: 1sdd:

Calcium binding site 1 out of 1 in 1sdd

Go back to Calcium Binding Sites List in 1sdd
Calcium binding site 1 out of 1 in the Crystal Structure of Bovine Factor Vai


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Bovine Factor Vai within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2184

b:68.7
occ:1.00
OD2 A:ASP112 2.0 83.0 1.0
O A:LYS93 2.3 60.5 1.0
OD1 A:ASP111 2.3 86.4 1.0
OD2 A:ASP111 2.7 82.4 1.0
CG A:ASP111 2.8 84.5 1.0
O A:GLU108 3.0 70.9 1.0
CG A:ASP112 3.0 81.9 1.0
OD1 A:ASP112 3.4 82.9 1.0
C A:LYS93 3.5 59.1 1.0
O A:ALA98 3.9 50.5 1.0
C A:GLU108 4.2 72.2 1.0
OE2 A:GLU96 4.2 55.7 1.0
N A:ASP112 4.2 80.0 1.0
CB A:GLU96 4.3 55.3 1.0
CB A:ASP111 4.3 83.5 1.0
CA A:LYS93 4.3 57.7 1.0
CB A:ASP112 4.3 81.8 1.0
N A:PHE94 4.4 62.2 1.0
N A:GLY97 4.5 49.8 1.0
CA A:PHE94 4.5 62.5 1.0
C A:ASP111 4.6 80.8 1.0
CA A:ASP112 4.6 80.7 1.0
N A:GLU96 4.7 55.1 1.0
CA A:LYS109 4.7 74.6 1.0
OD2 A:ASP102 4.8 54.8 1.0
CB A:LYS93 4.8 55.5 1.0
N A:ALA98 4.8 50.1 1.0
CA A:ASP111 4.9 82.0 1.0
N A:ASP111 4.9 81.8 1.0
N A:LYS109 4.9 73.4 1.0
N A:SER95 4.9 61.0 1.0
CA A:GLU96 5.0 53.2 1.0
C A:PHE94 5.0 61.7 1.0
C A:LYS109 5.0 75.6 1.0

Reference:

T.E.Adams, M.F.Hockin, K.G.Mann, S.J.Everse. The Crystal Structure of Activated Protein C-Inactivated Bovine Factor Va: Implications For Cofactor Function. Proc.Natl.Acad.Sci.Usa V. 101 8918 2004.
ISSN: ISSN 0027-8424
PubMed: 15184653
DOI: 10.1073/PNAS.0403072101
Page generated: Sat Dec 12 03:19:15 2020

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