Calcium in PDB 1smv: Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus

The structure of Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus, PDB code: 1smv was solved by M.Bhuvaneshwari, M.R.N.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 3.00
Space group	R 3 1
Cell size a, b, c (Å), α, β, γ (°)	291.460, 291.460, 291.460, 61.95, 61.95, 61.95
R / Rfree (%)	22.7 / n/a

The binding sites of Calcium atom in the Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus (pdb code 1smv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus, PDB code: 1smv:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca300 b:10.9 occ:1.00 OD1 B:ASN259 2.1 11.5 1.0 O B:LEU260 2.2 10.6 1.0 OD1 A:ASP141 2.3 10.9 1.0 O B:TYR199 2.3 8.2 1.0 OD2 A:ASP138 2.3 12.8 1.0 CG A:ASP141 3.2 13.7 1.0 CG A:ASP138 3.3 11.4 1.0 CG B:ASN259 3.3 7.0 1.0 C B:LEU260 3.4 9.8 1.0 OD2 A:ASP141 3.4 18.2 1.0 N B:LEU260 3.5 7.9 1.0 C B:TYR199 3.5 5.5 1.0 CB A:ASP138 3.6 8.1 1.0 CA B:LEU260 4.1 7.5 1.0 ND2 B:ASN259 4.1 6.3 1.0 C B:ASN259 4.2 7.8 1.0 N B:TYR199 4.2 2.0 1.0 CA B:TYR199 4.3 3.2 1.0 CA B:ASN259 4.3 7.6 1.0 CB B:TYR199 4.3 2.4 1.0 OXT B:LEU260 4.4 6.2 1.0 CB B:ASN259 4.4 6.4 1.0 OD1 A:ASP138 4.5 14.5 1.0 N B:LYS200 4.5 5.9 1.0 CD B:LYS200 4.6 8.1 1.0 CD1 B:TYR199 4.6 8.7 1.0 O B:SER108 4.6 12.6 1.0 CB A:ASP141 4.6 8.3 1.0 CA B:LYS200 4.7 7.1 1.0 NZ B:LYS200 4.8 8.4 1.0 C B:PRO198 5.0 2.7 1.0 CG B:TYR199 5.0 8.4 1.0 CA A:ASP141 5.0 6.9 1.0

Calcium binding site 2 out of 4 in the Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca302 b:11.6 occ:1.00 O C:LEU260 2.0 11.6 1.0 O C:TYR199 2.2 11.1 1.0 OD1 C:ASN259 2.2 10.2 1.0 OD1 B:ASP141 2.3 17.0 1.0 OD2 B:ASP138 2.3 13.1 1.0 C C:LEU260 3.2 11.2 1.0 CG B:ASP141 3.2 18.1 1.0 CG B:ASP138 3.4 10.8 1.0 C C:TYR199 3.4 7.2 1.0 OD2 B:ASP141 3.4 22.2 1.0 CG C:ASN259 3.5 5.5 1.0 N C:LEU260 3.5 7.9 1.0 CB B:ASP138 3.8 8.3 1.0 CE C:LYS200 3.9 9.4 1.0 CA C:LEU260 4.0 9.9 1.0 OXT C:LEU260 4.1 4.7 1.0 C C:ASN259 4.2 6.2 1.0 ND2 C:ASN259 4.2 8.7 1.0 N C:TYR199 4.3 5.4 1.0 CA C:TYR199 4.3 5.3 1.0 CD C:LYS200 4.3 9.6 1.0 CA C:ASN259 4.4 5.0 1.0 CB C:TYR199 4.4 4.3 1.0 N C:LYS200 4.4 8.3 1.0 OD1 B:ASP138 4.5 9.2 1.0 CB C:ASN259 4.5 3.5 1.0 CD1 C:TYR199 4.6 3.3 1.0 CA C:LYS200 4.6 8.1 1.0 CB B:ASP141 4.6 12.9 1.0 O C:SER108 4.8 8.3 1.0 N B:ASP141 4.9 9.5 1.0 CA B:ASP141 5.0 10.4 1.0 CB C:LEU260 5.0 8.3 1.0 C C:PRO198 5.0 3.1 1.0

Calcium binding site 3 out of 4 in the Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:10.5 occ:1.00 OD1 A:ASN259 2.0 11.9 1.0 O A:LEU260 2.1 11.8 1.0 OD1 C:ASP141 2.3 8.2 1.0 O A:TYR199 2.4 11.2 1.0 OD2 C:ASP138 2.4 8.9 1.0 CG C:ASP141 3.2 7.6 1.0 CG A:ASN259 3.2 7.4 1.0 C A:LEU260 3.3 9.8 1.0 OD2 C:ASP141 3.3 15.5 1.0 CG C:ASP138 3.4 9.4 1.0 C A:TYR199 3.5 7.3 1.0 N A:LEU260 3.6 6.2 1.0 CB C:ASP138 3.7 7.6 1.0 ND2 A:ASN259 4.0 9.9 1.0 CA A:LEU260 4.1 6.3 1.0 C A:ASN259 4.1 6.7 1.0 N A:TYR199 4.2 3.2 1.0 CB A:TYR199 4.2 3.0 1.0 CA A:ASN259 4.2 5.2 1.0 CA A:TYR199 4.2 4.2 1.0 OXT A:LEU260 4.2 7.5 1.0 CB A:ASN259 4.3 4.0 1.0 CD1 A:TYR199 4.5 6.3 1.0 O A:SER108 4.6 7.0 1.0 OD1 C:ASP138 4.6 9.9 1.0 N A:LYS200 4.6 8.0 1.0 CD A:LYS200 4.6 5.3 1.0 CB C:ASP141 4.6 6.7 1.0 NZ A:LYS200 4.7 5.1 1.0 CA A:LYS200 4.9 6.5 1.0 CG A:TYR199 4.9 6.8 1.0 O A:ASN259 4.9 10.9 1.0

Calcium binding site 4 out of 4 in the Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Primary Structure of Sesbania Mosaic Virus Coat Protein: Its Implications to the Assembly and Architecture of the Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca304 b:2.0 occ:1.00 NZ C:LYS194 3.9 21.1 1.0 NZ B:LYS194 4.1 23.7 1.0 NZ A:LYS194 4.1 19.9 1.0 CD A:LYS194 4.2 13.8 1.0 CD C:LYS194 4.2 16.1 1.0 CE B:LYS194 4.4 21.0 1.0 CB B:ASP218 4.6 2.0 1.0 CD B:LYS194 4.6 12.2 1.0 CE C:LYS194 4.7 17.6 1.0 CB A:ASP218 4.8 2.0 1.0 CA B:ASP218 4.8 3.8 1.0 CE A:LYS194 4.8 16.8 1.0 CB C:ASP218 4.9 2.0 1.0 CA A:ASP218 4.9 3.3 1.0 CA C:ASP218 5.0 3.9 1.0

M.Bhuvaneshwari, H.S.Subramanya, K.Gopinath, H.S.Savithri, M.V.Nayudu, M.R.Murthy. Structure of Sesbania Mosaic Virus at 3 A Resolution. Structure V. 3 1021 1995.
ISSN: ISSN 0969-2126
PubMed: 8589997
DOI: 10.1016/S0969-2126(01)00238-6