Atomistry » Calcium » PDB 1spu-1t5s » 1sud
Atomistry »
  Calcium »
    PDB 1spu-1t5s »
      1sud »

Calcium in PDB 1sud: Calcium-Independent Subtilisin By Design

Enzymatic activity of Calcium-Independent Subtilisin By Design

All present enzymatic activity of Calcium-Independent Subtilisin By Design:
3.4.21.62;

Protein crystallography data

The structure of Calcium-Independent Subtilisin By Design, PDB code: 1sud was solved by T.Gallagher, P.Bryan, G.L.Gilliland, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.680, 79.350, 37.070, 90.00, 114.62, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1sud:

The structure of Calcium-Independent Subtilisin By Design also contains other interesting chemical elements:

Potassium (K) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Calcium-Independent Subtilisin By Design (pdb code 1sud). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Calcium-Independent Subtilisin By Design, PDB code: 1sud:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1sud

Go back to Calcium Binding Sites List in 1sud
Calcium binding site 1 out of 2 in the Calcium-Independent Subtilisin By Design


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium-Independent Subtilisin By Design within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca295

b:8.2
occ:1.00
O A:LEU75 2.2 8.4 1.0
OD1 A:ASP41 2.2 8.1 1.0
O A:ILE79 2.2 8.6 1.0
O A:VAL81 2.4 9.3 1.0
OD1 A:ASN77 2.4 15.2 1.0
OE1 A:GLN2 2.4 12.0 1.0
OD2 A:ASP41 2.6 8.5 1.0
CG A:ASP41 2.7 8.2 1.0
CG A:ASN77 3.4 14.8 1.0
C A:LEU75 3.4 9.4 1.0
C A:ILE79 3.5 9.2 1.0
CD A:GLN2 3.5 12.1 1.0
C A:VAL81 3.6 9.9 1.0
N A:VAL81 3.8 8.8 1.0
CG A:GLN2 3.9 13.1 1.0
ND2 A:ASN77 3.9 14.7 1.0
N A:ASN77 4.1 14.0 1.0
C A:GLY80 4.2 8.8 1.0
CB A:ASP41 4.3 8.6 1.0
N A:GLY80 4.3 8.3 1.0
CA A:LEU75 4.3 8.8 1.0
CA A:VAL81 4.3 9.7 1.0
N A:LEU75 4.3 7.8 1.0
CA A:GLY80 4.4 8.8 1.0
N A:ASN76 4.4 11.6 1.0
CA A:ILE79 4.5 9.9 1.0
N A:ILE79 4.5 11.9 1.0
CB A:ASN77 4.5 14.8 1.0
N A:LEU82 4.6 10.2 1.0
CA A:ASN76 4.6 13.3 1.0
NE2 A:GLN2 4.6 11.6 1.0
CA A:ASN77 4.7 14.5 1.0
CG1 A:ILE79 4.7 9.7 1.0
O A:ASN77 4.7 13.7 1.0
C A:ALA74 4.7 7.2 1.0
CB A:GLN2 4.7 14.7 1.0
C A:ASN77 4.8 14.1 1.0
C A:ASN76 4.8 14.2 1.0
CB A:LEU75 4.8 9.1 1.0
O A:GLY80 4.9 7.4 1.0
CA A:LEU82 4.9 9.7 1.0

Calcium binding site 2 out of 2 in 1sud

Go back to Calcium Binding Sites List in 1sud
Calcium binding site 2 out of 2 in the Calcium-Independent Subtilisin By Design


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calcium-Independent Subtilisin By Design within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca296

b:22.8
occ:0.49
K A:K297 2.2 14.3 0.5
O A:GLU195 2.5 10.8 1.0
OD2 A:ASP197 2.5 10.0 1.0
O A:HOH368 2.7 13.1 0.7
OD1 A:ASP197 2.8 11.1 1.0
CG A:ASP197 3.0 10.1 1.0
O A:HOH375 3.2 10.9 0.6
C A:GLU195 3.5 9.7 1.0
O A:VAL174 3.8 8.7 1.0
CA A:GLU195 3.8 9.8 1.0
NH2 A:ARG247 3.8 12.2 1.0
CB A:GLU195 4.0 10.3 1.0
O A:TYR171 4.3 10.6 1.0
O A:GLY169 4.3 7.2 1.0
CB A:ASP197 4.4 9.5 1.0
O A:PRO172 4.5 10.9 1.0
CB A:ALA176 4.5 6.1 1.0
N A:LEU196 4.6 9.2 1.0
N A:ALA176 4.7 6.3 1.0
CA A:PRO172 4.7 10.6 1.0
N A:ASP197 4.8 7.7 1.0
C A:LEU196 4.9 8.3 1.0
O A:HOH425 4.9 20.8 0.7
C A:VAL174 5.0 7.1 1.0
O A:LYS170 5.0 11.2 1.0

Reference:

T.Gallagher, P.Bryan, G.L.Gilliland. Calcium-Independent Subtilisin By Design. Proteins V. 16 205 1993.
ISSN: ISSN 0887-3585
PubMed: 8332608
DOI: 10.1002/PROT.340160207
Page generated: Thu Jul 11 22:50:25 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy