Calcium in PDB 1szb: Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19)

The structure of Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19), PDB code: 1szb was solved by L.A.Gregory, N.M.Thielens, G.J.Arlaud, J.C.Fontecilla-Camps, C.Gaboriaud, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	17.00 / 2.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	67.754, 67.754, 187.923, 90.00, 90.00, 90.00
R / Rfree (%)	26.1 / 31.6

The binding sites of Calcium atom in the Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19) (pdb code 1szb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19), PDB code: 1szb:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1001 b:42.6 occ:1.00 OE2 A:GLU126 2.2 44.3 1.0 O A:HOH1009 2.3 26.9 1.0 OD1 A:ASN143 2.3 44.0 1.0 OD1 A:ASP123 2.4 41.3 1.0 O A:HIS144 2.4 45.6 1.0 O A:ILE124 2.5 42.6 1.0 O A:GLY147 2.6 49.7 1.0 CG A:ASP123 3.1 40.5 1.0 OD2 A:ASP123 3.2 39.2 1.0 CD A:GLU126 3.3 46.5 1.0 CG A:ASN143 3.4 44.1 1.0 N A:GLY147 3.5 47.5 1.0 C A:GLY147 3.6 46.7 1.0 C A:HIS144 3.6 46.9 1.0 C A:ILE124 3.7 42.6 1.0 OE1 A:GLU126 3.8 46.0 1.0 ND2 A:ASN143 3.9 42.7 1.0 CA A:GLY147 3.9 47.3 1.0 N A:GLY146 4.0 46.1 1.0 N A:HIS144 4.0 44.4 1.0 N A:ILE124 4.3 41.6 1.0 C A:GLY146 4.3 47.3 1.0 CA A:ASP125 4.4 41.9 1.0 N A:LEU145 4.5 48.3 1.0 C A:LEU145 4.5 46.8 1.0 CA A:HIS144 4.5 45.8 1.0 N A:ASP125 4.5 42.5 1.0 CA A:LEU145 4.5 46.7 1.0 N A:GLU126 4.6 42.9 1.0 CG A:GLU126 4.6 48.8 1.0 CB A:ASP123 4.6 39.7 1.0 O A:GLY39 4.6 54.7 1.0 CA A:ILE124 4.6 42.5 1.0 CA A:GLY146 4.6 45.4 1.0 CB A:ASN143 4.6 42.0 1.0 N A:PHE148 4.8 45.1 1.0 C A:ASN143 4.8 43.7 1.0 CA A:ASN143 4.9 43.8 1.0 C A:ASP123 4.9 40.5 1.0 CB A:ILE124 5.0 43.9 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1003 b:58.5 occ:1.00 OD1 A:ASN108 2.1 70.5 1.0 OE1 A:GLU52 2.3 63.1 1.0 O A:SER107 2.4 77.8 1.0 OD1 A:ASP105 2.4 70.5 1.0 O A:HOH1019 2.5 43.6 1.0 OD2 A:ASP60 2.6 63.2 1.0 OD1 A:ASP60 2.9 66.5 1.0 CD A:GLU52 2.9 62.8 1.0 CG A:ASN108 3.0 71.5 1.0 CG A:ASP60 3.1 65.4 1.0 C A:SER107 3.2 78.5 1.0 OE2 A:GLU52 3.3 65.1 1.0 CG A:ASP105 3.4 72.9 1.0 CA A:ASN108 3.6 76.1 1.0 N A:ASN108 3.8 77.0 1.0 OD2 A:ASP105 3.8 72.8 1.0 ND2 A:ASN108 3.8 71.6 1.0 CB A:ASN108 3.9 74.4 1.0 CB A:GLU52 3.9 58.8 1.0 CG A:GLU52 4.0 61.9 1.0 ND2 A:ASN26 4.3 63.2 1.0 CA A:SER107 4.4 78.7 1.0 N A:SER107 4.4 78.8 1.0 N A:ASP105 4.6 73.9 1.0 CB A:ASP60 4.6 64.2 1.0 CB A:ASP105 4.8 72.6 1.0 O A:ASP105 4.8 75.2 1.0 OH A:TYR24 4.8 48.2 1.0 C A:ASN108 4.9 77.0 1.0 C A:ASP105 4.9 76.3 1.0 CE1 A:TYR24 4.9 46.5 1.0 CA A:ASP105 5.0 74.7 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1002 b:51.9 occ:1.00 OD1 B:ASP123 2.2 58.8 1.0 OE2 B:GLU126 2.3 54.2 1.0 O B:HOH1007 2.4 45.0 1.0 OD1 B:ASN143 2.4 51.0 1.0 O B:HIS144 2.5 52.4 1.0 O B:ILE124 2.5 53.3 1.0 O B:GLY147 2.6 59.9 1.0 CG B:ASP123 3.0 57.5 1.0 OD2 B:ASP123 3.0 55.1 1.0 CD B:GLU126 3.3 53.4 1.0 N B:GLY147 3.3 60.5 1.0 C B:GLY147 3.5 58.2 1.0 CG B:ASN143 3.6 51.2 1.0 OE1 B:GLU126 3.7 51.1 1.0 C B:HIS144 3.7 52.2 1.0 C B:ILE124 3.7 54.4 1.0 CA B:GLY147 3.8 58.2 1.0 N B:GLY146 3.9 56.1 1.0 N B:HIS144 4.1 49.4 1.0 ND2 B:ASN143 4.2 51.6 1.0 C B:GLY146 4.2 59.7 1.0 N B:ILE124 4.2 55.5 1.0 CB B:ASP123 4.4 55.9 1.0 C B:LEU145 4.5 54.9 1.0 CA B:GLY146 4.5 57.4 1.0 CA B:ILE124 4.5 54.1 1.0 N B:LEU145 4.6 50.7 1.0 CA B:HIS144 4.6 51.2 1.0 CA B:LEU145 4.6 52.2 1.0 CG B:GLU126 4.6 54.4 1.0 N B:ASP125 4.7 54.4 1.0 N B:PHE148 4.7 57.2 1.0 CA B:ASP125 4.7 54.4 1.0 CB B:ASN143 4.8 47.5 1.0 C B:ASP123 4.8 55.0 1.0 N B:GLU126 4.9 55.4 1.0 C B:ASN143 4.9 48.0 1.0 CA B:ASN143 5.0 47.8 1.0 CB B:ILE124 5.0 54.9 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Human Mbl-Associated Protein 19 (MAP19) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1004 b:76.6 occ:1.00 OD2 B:ASP60 2.3 86.5 1.0 O B:SER107 2.4 97.5 1.0 OD1 B:ASP105 2.5 90.1 1.0 OE1 B:GLU52 2.5 89.2 1.0 ND2 B:ASN108 2.7 0.0 1.0 OD1 B:ASP60 2.9 85.8 1.0 CG B:ASP60 2.9 85.7 1.0 CG B:ASN108 3.0 0.4 1.0 OD1 B:ASN108 3.2 0.5 1.0 CD B:GLU52 3.3 88.1 1.0 C B:SER107 3.4 96.3 1.0 CG B:ASP105 3.6 89.2 1.0 OE2 B:GLU52 3.7 90.3 1.0 CA B:ASN108 3.9 97.0 1.0 CB B:ASN108 3.9 98.9 1.0 N B:ASN108 4.0 96.5 1.0 CB B:GLU52 4.1 84.7 1.0 OD2 B:ASP105 4.2 88.5 1.0 CG B:GLU52 4.3 87.6 1.0 N B:ASP105 4.3 89.3 1.0 O B:ASP105 4.4 90.7 1.0 CB B:ASP60 4.4 86.0 1.0 CA B:SER107 4.4 95.1 1.0 OH B:TYR24 4.5 80.6 1.0 N B:SER107 4.5 94.0 1.0 CE1 B:TYR24 4.6 81.8 1.0 C B:ASP105 4.7 91.1 1.0 ND2 B:ASN26 4.7 85.2 1.0 CB B:ASP105 4.8 88.8 1.0 CA B:ASP105 4.8 90.1 1.0

L.A.Gregory, N.M.Thielens, M.Matsushita, R.Sorensen, G.J.Arlaud, J.C.Fontecilla-Camps, C.Gaboriaud. The X-Ray Structure of Human Mbl-Associated Protein 19 (MAP19) and Its Interaction Site with Mannan-Binding Lectin and L-Ficolin J.Biol.Chem. V. 279 29391 2004.
ISSN: ISSN 0021-9258
PubMed: 15117939
DOI: 10.1074/JBC.M402687200