Calcium in PDB 1tdq: Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins

The structure of Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins, PDB code: 1tdq was solved by A.Lundell, A.I.Olin, M.Moergelin, S.Al-Karadaghi, A.Aspberg, D.T.Logan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.00 / 2.60
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	112.520, 86.420, 57.600, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 23.4

The binding sites of Calcium atom in the Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins (pdb code 1tdq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins, PDB code: 1tdq:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca127 b:10.8 occ:1.00 O B:HOH137 2.2 47.2 1.0 OD1 B:ASP112 2.2 14.1 1.0 OD1 B:ASN111 2.3 7.7 1.0 OE1 B:GLN88 2.4 14.0 1.0 OD1 B:ASP90 2.4 23.0 1.0 OE2 B:GLU97 2.4 28.2 1.0 O B:ASP112 2.5 6.8 1.0 CG B:ASP112 3.2 9.4 1.0 CG B:ASN111 3.4 5.4 1.0 CD B:GLN88 3.4 12.2 1.0 CG B:ASP90 3.5 20.1 1.0 C B:ASP112 3.6 11.2 1.0 CD B:GLU97 3.6 27.5 1.0 N B:ASP112 3.8 9.1 1.0 OD2 B:ASP112 3.8 8.0 1.0 ND2 B:ASN111 3.9 4.9 1.0 OD2 B:ASP90 4.0 23.9 1.0 CA B:ASP112 4.1 10.3 1.0 NE2 B:GLN88 4.1 11.9 1.0 N B:ASP90 4.1 12.9 1.0 O B:HOH155 4.2 56.3 1.0 CB B:ASP112 4.2 9.1 1.0 CG B:GLN88 4.4 11.8 1.0 OE1 B:GLU97 4.4 32.3 1.0 CG B:GLU97 4.5 24.5 1.0 C B:ASN111 4.6 13.0 1.0 CB B:ASP90 4.7 13.2 1.0 CB B:ASN111 4.7 5.9 1.0 N B:VAL113 4.7 8.1 1.0 N B:ASN91 4.7 10.7 1.0 CA B:ASP90 4.8 12.7 1.0 CA B:ASN111 4.8 9.7 1.0 CB B:GLN88 4.8 12.1 1.0 N B:PHE92 4.9 8.1 1.0 CB B:PHE92 4.9 10.8 1.0 CG1 B:VAL113 5.0 13.5 1.0

Calcium binding site 2 out of 3 in the Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca128 b:17.4 occ:1.00 OD2 B:ASP64 2.4 18.4 1.0 OD1 B:ASP98 2.4 11.7 1.0 O B:GLU97 2.5 14.7 1.0 OD1 B:ASN91 2.5 11.4 1.0 OE2 B:GLU68 2.5 10.3 1.0 OD1 B:ASP64 2.6 11.6 1.0 OE1 B:GLU68 2.7 17.5 1.0 CD B:GLU68 3.0 17.3 1.0 CG B:ASP64 3.0 15.5 1.0 CG B:ASN91 3.4 8.1 1.0 C B:GLU97 3.5 17.5 1.0 CG B:ASP98 3.6 13.7 1.0 CA B:ASP98 3.9 15.7 1.0 O B:HOH142 4.0 76.7 1.0 CB B:ASN91 4.0 6.3 1.0 N B:ASP98 4.2 16.9 1.0 CA B:CA129 4.2 18.1 1.0 CB B:ASP98 4.2 15.4 1.0 ND2 B:ASN91 4.4 5.9 1.0 CA B:ASN91 4.5 10.3 1.0 CG B:GLU68 4.5 16.4 1.0 CB B:ASP64 4.5 14.6 1.0 OD2 B:ASP98 4.6 10.5 1.0 CZ B:PHE71 4.6 14.4 1.0 CA B:GLU97 4.6 21.4 1.0 OD2 B:ASP112 4.7 8.0 1.0 N B:GLY69 4.8 20.1 1.0 CB B:GLU97 4.8 23.6 1.0 O B:HOH141 4.8 59.9 1.0 O B:ASP64 4.9 16.9 1.0

Calcium binding site 3 out of 3 in the Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structural Basis For the Interactions Between Tenascins and the C-Type Lectin Domains From Lecticans: Evidence For A Cross-Linking Role For Tenascins within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca129 b:18.1 occ:1.00 O B:HOH141 2.1 59.9 1.0 O B:HOH139 2.3 60.8 1.0 O B:HOH140 2.5 62.7 1.0 OE1 B:GLU68 2.5 17.5 1.0 OD2 B:ASP98 2.5 10.5 1.0 OD1 B:ASP98 2.6 11.7 1.0 O B:HOH142 2.8 76.7 1.0 CG B:ASP98 3.0 13.7 1.0 CD B:GLU68 3.7 17.3 1.0 CA B:CA128 4.2 17.4 1.0 OD1 B:ASN91 4.4 11.4 1.0 CB B:ASP98 4.5 15.4 1.0 CG B:GLU68 4.5 16.4 1.0 CB B:GLU68 4.6 16.4 1.0 O B:ASP64 4.7 16.9 1.0 OE2 B:GLU68 4.7 10.3 1.0 N B:GLY96 4.8 29.5 1.0 CA B:GLY96 4.9 27.3 1.0 O B:ALA94 4.9 30.2 1.0 OD1 B:ASP64 4.9 11.6 1.0 OD2 B:ASP64 4.9 18.4 1.0

A.Lundell, A.I.Olin, M.Moergelin, S.Al-Karadaghi, A.Aspberg, D.T.Logan. Structural Basis For Interactions Between Tenascins and Lectican C-Type Lectin Domains: Evidence For A Crosslinking Role For Tenascins Structure V. 12 1495 2004.
ISSN: ISSN 0969-2126
PubMed: 15296743
DOI: 10.1016/J.STR.2004.05.021