Calcium in PDB 1te2: Putative Phosphatase Ynic From Escherichia Coli K12

All present enzymatic activity of Putative Phosphatase Ynic From Escherichia Coli K12:
3.1.3.18;

The structure of Putative Phosphatase Ynic From Escherichia Coli K12, PDB code: 1te2 was solved by Y.Kim, A.Joachimiak, E.Evdokimova, A.Savchenko, A.Edwards, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.16 / 1.76
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.591, 88.447, 48.591, 90.00, 97.26, 90.00
R / Rfree (%)	17.4 / 22

The binding sites of Calcium atom in the Putative Phosphatase Ynic From Escherichia Coli K12 (pdb code 1te2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Putative Phosphatase Ynic From Escherichia Coli K12, PDB code: 1te2:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Putative Phosphatase Ynic From Escherichia Coli K12


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Putative Phosphatase Ynic From Escherichia Coli K12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca702 b:13.1 occ:0.95 O4P A:PGA711 2.1 20.8 0.9 O A:ASP15 2.2 13.9 1.0 OD1 A:ASP173 2.3 13.6 1.0 OD2 A:ASP13 2.3 18.1 1.0 O A:HOH725 2.4 20.6 1.0 O A:HOH713 2.5 15.4 1.0 O A:HOH720 2.6 41.3 1.0 CG A:ASP13 3.2 16.6 1.0 OD1 A:ASP13 3.3 17.6 1.0 CG A:ASP173 3.4 16.1 1.0 C A:ASP15 3.4 14.9 1.0 OD2 A:ASP173 3.7 16.5 1.0 P A:PGA711 3.8 18.0 0.7 C1 A:PGA711 3.9 18.5 0.7 OE1 A:GLU172 4.2 15.0 1.0 OE2 A:GLU22 4.3 23.8 1.0 CA A:ASP15 4.3 14.9 1.0 CB A:ASP15 4.4 15.3 1.0 N A:ASP15 4.4 15.0 1.0 N A:GLY16 4.4 14.9 1.0 O1 A:PGA711 4.4 19.8 0.9 O3P A:PGA711 4.5 18.3 0.7 OG A:SER174 4.5 12.9 1.0 CA A:GLY16 4.6 15.1 1.0 CB A:ASP173 4.6 14.4 1.0 O1P A:PGA711 4.7 16.7 0.9 CB A:ASP13 4.7 15.5 1.0 O2P A:PGA711 4.7 17.1 0.9 CB A:SER174 4.8 13.2 1.0 CA A:GLY51 4.8 16.9 1.0 N A:ASP173 4.8 14.4 1.0 C2 A:PGA711 4.9 16.9 0.9 C A:MSE14 5.0 15.4 0.5 C A:GLY16 5.0 15.1 1.0

Calcium binding site 2 out of 4 in the Putative Phosphatase Ynic From Escherichia Coli K12


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Putative Phosphatase Ynic From Escherichia Coli K12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca701 b:12.5 occ:0.95 O B:ASP130 2.3 17.9 1.0 OD1 B:ASP133 2.5 15.9 1.0 O B:HOH743 2.5 17.2 1.0 OD2 B:ASP133 2.6 14.0 1.0 CG B:ASP133 2.9 15.4 1.0 C B:ASP130 3.5 18.6 1.0 CB B:ASP130 4.2 20.3 1.0 CA B:ASP130 4.3 19.7 1.0 N B:LEU131 4.3 17.8 1.0 CB B:ASP133 4.3 15.5 1.0 O B:HOH714 4.4 7.7 1.0 CA B:LEU131 4.4 17.3 1.0 OG B:SER134 4.6 14.4 1.0 O B:HOH760 4.9 19.6 1.0 C B:LEU131 4.9 16.5 1.0 N B:ASP133 4.9 15.9 1.0

Calcium binding site 3 out of 4 in the Putative Phosphatase Ynic From Escherichia Coli K12


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Putative Phosphatase Ynic From Escherichia Coli K12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca703 b:28.2 occ:0.77 O B:HOH829 2.2 45.1 1.0 O B:HOH927 2.4 45.0 1.0 O B:GLU106 2.4 22.1 1.0 C B:GLU106 3.6 22.1 1.0 N B:GLY108 4.2 17.4 1.0 N B:GLN107 4.4 20.3 1.0 CA B:GLN107 4.4 19.4 1.0 C B:GLN107 4.4 18.3 1.0 CA B:GLU106 4.5 23.2 1.0 O B:LYS105 4.7 22.1 1.0 CA B:GLY108 4.7 16.7 1.0 O B:HOH881 4.8 43.9 1.0

Calcium binding site 4 out of 4 in the Putative Phosphatase Ynic From Escherichia Coli K12


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Putative Phosphatase Ynic From Escherichia Coli K12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca704 b:12.6 occ:0.95 O3P B:PGA712 2.0 21.5 0.8 OD1 B:ASP173 2.3 11.7 1.0 O B:ASP15 2.3 14.3 1.0 O B:HOH740 2.4 21.4 1.0 OD2 B:ASP13 2.4 17.9 1.0 O B:HOH716 2.5 12.3 1.0 O B:HOH924 2.7 31.7 1.0 CG B:ASP13 3.3 16.1 1.0 CG B:ASP173 3.4 16.2 1.0 OD1 B:ASP13 3.4 16.3 1.0 C B:ASP15 3.5 15.4 1.0 OD2 B:ASP173 3.7 16.4 1.0 P B:PGA712 3.8 21.3 0.7 C1 B:PGA712 3.9 18.3 0.6 OE1 B:GLU172 4.2 13.0 1.0 OE2 B:GLU22 4.3 26.4 1.0 O1 B:PGA712 4.3 17.4 0.9 CA B:ASP15 4.3 16.0 1.0 CB B:ASP15 4.4 16.3 1.0 O2P B:PGA712 4.4 21.0 0.8 N B:ASP15 4.5 16.4 1.0 OG B:SER174 4.5 13.2 1.0 N B:GLY16 4.5 15.7 1.0 CB B:ASP173 4.6 13.8 1.0 O1P B:PGA712 4.6 18.3 0.9 CA B:GLY16 4.7 15.5 1.0 CB B:ASP13 4.7 15.4 1.0 CB B:SER174 4.7 13.1 1.0 O4P B:PGA712 4.8 20.3 0.9 N B:ASP173 4.8 14.3 1.0 CA B:GLY51 4.8 16.4 1.0 C2 B:PGA712 4.9 17.4 0.9 N B:SER174 5.0 13.4 1.0 C B:GLY16 5.0 15.5 1.0

Y.Kim, A.Joachimiak, E.Evdokimova, A.Savchenko, A.Edwards. Crystal Structure of Putative Phosphatase Ynic From Escherichia Coli K12 To Be Published.