Calcium in PDB 1tn3: The C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin

The structure of The C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin, PDB code: 1tn3 was solved by J.S.Kastrup, B.B.Nielsen, H.Rasmussen, T.L.Holtet, J.H.Graversen, M.Etzerodt, H.C.Thoegersen, I.K.Larsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.00
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	64.250, 64.250, 75.800, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 26.7

The binding sites of Calcium atom in the The C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin (pdb code 1tn3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin, PDB code: 1tn3:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the The C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca182 b:28.5 occ:1.00 OD1 A:ASN151 2.0 14.2 1.0 O A:GLY147 2.4 34.1 1.0 O A:HOH189 2.4 28.3 1.0 O A:GLU150 2.5 28.0 1.0 OE2 A:GLU120 2.6 34.3 1.0 OE1 A:GLU120 2.6 35.0 1.0 OD1 A:ASP116 2.6 32.4 1.0 OD2 A:ASP116 2.7 43.6 1.0 CD A:GLU120 2.9 45.1 1.0 CG A:ASP116 3.0 36.2 1.0 CG A:ASN151 3.2 32.9 1.0 C A:GLY147 3.3 34.5 1.0 C A:GLU150 3.5 29.7 1.0 CA A:ASN151 3.8 27.5 1.0 CB A:ASN151 3.8 26.2 1.0 CZ2 A:TRP123 4.0 30.4 1.0 N A:LYS148 4.0 31.0 1.0 N A:ASN151 4.1 27.6 1.0 CA A:LYS148 4.1 31.9 1.0 O A:HOH235 4.1 39.0 1.0 CA A:GLY147 4.2 29.7 1.0 O A:HOH242 4.3 57.4 1.0 ND2 A:ASN151 4.3 15.4 1.0 CG A:GLU120 4.4 45.0 1.0 N A:GLU150 4.5 28.7 1.0 CH2 A:TRP123 4.5 30.7 1.0 N A:GLY147 4.5 28.8 1.0 CB A:ASP116 4.6 31.8 1.0 C A:LYS148 4.6 33.3 1.0 CA A:GLU150 4.6 27.8 1.0 C1 A:EOH301 4.7 25.8 1.0 OD2 A:ASP165 4.8 33.4 1.0 CE2 A:TRP123 4.8 32.1 1.0 O A:EOH301 4.8 63.2 1.0 N A:THR149 4.9 30.9 1.0 N A:GLY121 4.9 26.8 1.0 O A:ASP116 4.9 34.0 1.0 O A:HOH199 5.0 65.4 1.0 CA A:GLU120 5.0 35.6 1.0

Calcium binding site 2 out of 2 in the The C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca183 b:42.2 occ:1.00 OD1 A:ASP165 2.4 30.0 1.0 OE1 A:GLU150 2.4 38.1 1.0 OE1 A:GLN143 2.5 32.1 1.0 O A:HOH201 2.5 56.1 1.0 O A:ASP165 2.8 28.0 1.0 OD1 A:ASP145 3.1 51.8 1.0 O A:HOH223 3.1 64.5 1.0 CG A:ASP165 3.3 31.7 1.0 CD A:GLU150 3.5 39.8 1.0 CD A:GLN143 3.5 45.8 1.0 C A:ASP165 3.6 27.0 1.0 N A:ASP165 3.6 23.9 1.0 CG A:ASP145 3.9 54.1 1.0 NE2 A:GLN143 3.9 36.6 1.0 CA A:ASP165 4.0 23.7 1.0 OE2 A:GLU150 4.0 34.8 1.0 N A:ASP145 4.1 31.8 1.0 CB A:ASP165 4.2 26.4 1.0 OD2 A:ASP165 4.2 33.4 1.0 N A:GLY146 4.3 25.4 1.0 OD2 A:ASP145 4.3 70.7 1.0 C A:PHE164 4.5 30.1 1.0 CB A:PHE164 4.6 29.9 1.0 N A:LYS166 4.6 22.5 1.0 C A:ASP145 4.8 34.5 1.0 CA A:PHE164 4.8 26.3 1.0 CA A:ASP145 4.8 32.1 1.0 CG A:GLU150 4.8 28.3 1.0 CG A:GLN143 4.9 45.5 1.0 CA A:GLY146 4.9 23.6 1.0 CB A:ASP145 5.0 35.2 1.0 CA A:PRO144 5.0 34.3 1.0

J.S.Kastrup, B.B.Nielsen, H.Rasmussen, T.L.Holtet, J.H.Graversen, M.Etzerodt, H.C.Thogersen, I.K.Larsen. Structure of the C-Type Lectin Carbohydrate Recognition Domain of Human Tetranectin. Acta Crystallogr.,Sect.D V. 54 757 1998.
ISSN: ISSN 0907-4449
PubMed: 9757090
DOI: 10.1107/S0907444997016806