Calcium in PDB 1ttx: Solution Structure of Human Beta Parvalbumin (Oncomodulin) Refined with A Paramagnetism Based Strategy

The binding sites of Calcium atom in the Solution Structure of Human Beta Parvalbumin (Oncomodulin) Refined with A Paramagnetism Based Strategy (pdb code 1ttx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of Human Beta Parvalbumin (Oncomodulin) Refined with A Paramagnetism Based Strategy, PDB code: 1ttx:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of Human Beta Parvalbumin (Oncomodulin) Refined with A Paramagnetism Based Strategy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of Human Beta Parvalbumin (Oncomodulin) Refined with A Paramagnetism Based Strategy within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca110 b:0.4 occ:1.00 OD2 A:ASP93 2.2 0.7 1.0 OD1 A:ASP91 2.2 0.9 1.0 OD1 A:ASP95 2.2 1.7 1.0 OE1 A:GLU102 2.3 1.1 1.0 O A:LYS97 2.3 0.6 1.0 OE2 A:GLU102 2.4 1.3 1.0 CD A:GLU102 2.7 0.5 1.0 HB2 A:ASP93 2.9 0.9 1.0 HA A:ILE98 3.1 0.4 1.0 CG A:ASP91 3.2 0.5 1.0 CG A:ASP95 3.2 0.9 1.0 CG A:ASP93 3.2 0.8 1.0 H A:GLY96 3.3 0.5 1.0 C A:LYS97 3.4 0.5 1.0 OD2 A:ASP95 3.5 2.0 1.0 CB A:ASP93 3.6 0.7 1.0 OD2 A:ASP91 3.6 0.7 1.0 HA A:ASP91 3.6 0.3 1.0 HG3 A:LYS97 3.8 3.0 1.0 H A:GLY99 3.9 0.8 1.0 CA A:ILE98 4.0 0.4 1.0 HG13 A:ILE98 4.1 0.6 1.0 H A:ASP95 4.1 0.6 1.0 N A:ILE98 4.1 0.4 1.0 CG A:GLU102 4.2 0.5 1.0 HB3 A:ASP93 4.2 0.8 1.0 HE1 A:TYR58 4.3 4.0 1.0 N A:GLY96 4.3 0.6 1.0 H A:LYS97 4.3 0.6 1.0 CB A:ASP91 4.3 0.3 1.0 CA A:ASP91 4.4 0.3 1.0 N A:LYS97 4.4 0.5 1.0 HZ1 A:LYS97 4.4 5.6 1.0 OD1 A:ASP93 4.4 1.2 1.0 HG12 A:ILE98 4.4 0.7 1.0 H A:ASP93 4.4 0.8 1.0 H A:GLY94 4.5 0.6 1.0 CA A:LYS97 4.5 0.5 1.0 N A:ASP93 4.5 0.8 1.0 HG2 A:LYS97 4.5 2.9 1.0 HG2 A:GLU102 4.5 0.8 1.0 CB A:ASP95 4.6 0.7 1.0 CG A:LYS97 4.6 2.1 1.0 HB2 A:ASP91 4.6 0.4 1.0 CG1 A:ILE98 4.7 0.5 1.0 CA A:ASP93 4.7 0.8 1.0 C A:GLY96 4.7 0.5 1.0 HG3 A:GLU102 4.7 0.9 1.0 N A:GLY99 4.7 0.5 1.0 C A:ASP91 4.7 0.3 1.0 H A:ASN92 4.7 1.5 1.0 HB3 A:GLU102 4.8 0.5 1.0 N A:ASP95 4.8 0.6 1.0 N A:ASN92 4.9 0.9 1.0 C A:ILE98 4.9 0.4 1.0 CB A:ILE98 5.0 0.4 1.0 CA A:GLY96 5.0 0.5 1.0 HG21 A:ILE98 5.0 1.7 1.0 HB3 A:ASP95 5.0 0.8 1.0

Calcium binding site 2 out of 2 in the Solution Structure of Human Beta Parvalbumin (Oncomodulin) Refined with A Paramagnetism Based Strategy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of Human Beta Parvalbumin (Oncomodulin) Refined with A Paramagnetism Based Strategy within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca111 b:0.8 occ:1.00 OE1 A:GLU63 2.2 1.8 1.0 OD1 A:ASP52 2.3 1.5 1.0 O A:TYR58 2.3 0.6 1.0 OE2 A:GLU63 2.3 2.4 1.0 OG A:SER56 2.3 1.7 1.0 OD2 A:ASP52 2.3 1.6 1.0 CD A:GLU63 2.6 1.5 1.0 HG A:SER56 2.6 2.5 1.0 CG A:ASP52 2.6 0.9 1.0 HB2 A:ASP54 2.9 2.2 1.0 H A:SER56 3.1 1.4 1.0 H A:TYR58 3.2 0.9 1.0 C A:TYR58 3.5 0.7 1.0 CB A:SER56 3.6 1.6 1.0 H A:GLY57 3.6 1.1 1.0 HA A:LEU59 3.7 0.6 1.0 N A:SER56 3.7 1.1 1.0 OD1 A:ASP60 3.8 1.2 1.0 H A:ASP60 3.9 0.8 1.0 HD11 A:LEU59 4.0 3.2 1.0 CB A:ASP54 4.0 1.1 1.0 N A:TYR58 4.0 0.9 1.0 CB A:ASP52 4.0 0.8 1.0 CA A:SER56 4.0 1.4 1.0 CG A:GLU63 4.1 2.2 1.0 N A:GLY57 4.1 1.4 1.0 HB2 A:SER56 4.2 1.8 1.0 HD23 A:LEU59 4.2 3.0 1.0 HA A:ASP52 4.2 0.8 1.0 HB2 A:ASP52 4.2 1.0 1.0 HB3 A:SER56 4.3 1.6 1.0 C A:SER56 4.3 1.6 1.0 H A:GLN55 4.3 0.5 1.0 CA A:TYR58 4.4 0.8 1.0 N A:LEU59 4.4 0.7 1.0 HB3 A:ASP54 4.4 1.6 1.0 CA A:LEU59 4.5 0.6 1.0 N A:GLN55 4.5 0.7 1.0 HB3 A:GLU63 4.5 2.0 1.0 HG2 A:GLU63 4.5 3.1 1.0 OD1 A:ASP54 4.6 3.4 1.0 CG A:ASP54 4.6 2.6 1.0 HB2 A:GLU63 4.6 1.1 1.0 H A:ASP54 4.7 1.2 1.0 CA A:ASP52 4.7 0.7 1.0 HB2 A:TYR58 4.7 1.0 1.0 HG3 A:GLU63 4.7 3.0 1.0 C A:GLN55 4.7 1.0 1.0 CB A:GLU63 4.7 1.4 1.0 C A:ASP54 4.8 0.9 1.0 HB3 A:ASP52 4.8 1.0 1.0 N A:ASP60 4.8 0.6 1.0 CA A:ASP54 4.9 0.8 1.0 CG A:ASP60 5.0 1.0 1.0

E.Babini, I.Bertini, F.Capozzi, C.Del Bianco, D.Hollender, T.Kiss, C.Luchinat, A.Quattrone. Solution Structure of Human Beta-Parvalbumin and Structural Comparison with Its Paralog Alpha-Parvalbumin and with Their Rat Orthologs(,) Biochemistry V. 43 16076 2004.
ISSN: ISSN 0006-2960
PubMed: 15610002
DOI: 10.1021/BI048388O