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Calcium in PDB 1u2y: In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam

Enzymatic activity of In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam

All present enzymatic activity of In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam:
3.2.1.1;

Protein crystallography data

The structure of In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam, PDB code: 1u2y was solved by S.Numao, C.Li, I.Damager, T.M.Wrodnigg, A.Begum, C.M.Overall, G.D.Brayer, S.G.Withers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.800, 68.900, 132.400, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 19.8

Other elements in 1u2y:

The structure of In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam (pdb code 1u2y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam, PDB code: 1u2y:

Calcium binding site 1 out of 1 in 1u2y

Go back to Calcium Binding Sites List in 1u2y
Calcium binding site 1 out of 1 in the In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors, Structure Containing D-Gluconhydroximo-1,5-Lactam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca497

b:16.4
occ:1.00
 O A:ARG158 2.4 15.4 1.0
OD2 A:ASP167 2.5 14.8 1.0
OD1 A:ASN100 2.5 14.3 1.0
O A:HIS201 2.5 16.0 1.0
OD1 A:ASP167 2.5 11.9 1.0
O A:HOH574 2.6 21.6 1.0
CG A:ASP167 2.8 15.5 1.0
C A:ARG158 3.5 16.7 1.0
CG A:ASN100 3.5 16.9 1.0
C A:HIS201 3.7 15.7 1.0
ND2 A:ASN100 4.0 16.1 1.0
CA A:ARG158 4.1 16.9 1.0
CB A:ASP167 4.3 13.7 1.0
CB A:HIS201 4.3 15.2 1.0
O A:ASN100 4.4 15.4 1.0
N A:ASP159 4.5 16.3 1.0
CA A:HIS201 4.5 15.1 1.0
ND2 A:ASN137 4.6 19.5 1.0
O A:CYS160 4.6 18.8 1.0
O A:HOH542 4.6 16.7 1.0
N A:MET202 4.6 15.1 1.0
CA A:MET202 4.7 14.8 1.0
O A:VAL157 4.8 18.0 1.0
CG A:MET202 4.8 16.4 1.0
CA A:ASP159 4.8 18.1 1.0
CB A:ASN100 4.8 15.8 1.0
O A:LEU168 4.9 16.1 1.0
O A:HOH516 4.9 16.0 1.0
CB A:ARG158 5.0 19.6 1.0

Reference:

S.Numao, I.Damager, C.Li, T.M.Wrodnigg, A.Begum, C.M.Overall, G.D.Brayer, S.G.Withers. In Situ Extension As An Approach For Identifying Novel Alpha-Amylase Inhibitors. J.Biol.Chem. V. 279 48282 2004.
ISSN: ISSN 0021-9258
PubMed: 15304511
DOI: 10.1074/JBC.M406804200
Page generated: Thu Jul 11 23:14:53 2024

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