Atomistry » Calcium » PDB 1ux7-1v3d » 1v2i
Atomistry »
  Calcium »
    PDB 1ux7-1v3d »
      1v2i »

Calcium in PDB 1v2i: Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III

Enzymatic activity of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III

All present enzymatic activity of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III:
3.2.1.18;

Protein crystallography data

The structure of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III, PDB code: 1v2i was solved by M.C.Lawrence, N.A.Borg, V.A.Streltsov, P.A.Pilling, V.C.Epa, J.N.Varghese, J.L.Mckimm-Breschkin, P.M.Colman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.30 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.500, 93.780, 105.200, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 25.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III (pdb code 1v2i). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III, PDB code: 1v2i:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1v2i

Go back to Calcium Binding Sites List in 1v2i
Calcium binding site 1 out of 2 in the Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1001

b:27.2
occ:1.00
O A:ASP279 2.2 31.6 1.0
O A:GLY284 2.3 28.9 1.0
O A:SER282 2.4 37.3 1.0
O A:ALA316 2.4 26.3 1.0
OD1 A:ASP279 2.5 28.3 1.0
OG A:SER282 2.7 34.1 1.0
C A:ASP279 3.2 31.4 1.0
C A:SER282 3.4 34.3 1.0
C A:GLY284 3.5 26.4 1.0
C A:ALA316 3.6 30.6 1.0
CB A:SER282 3.7 32.9 1.0
CG A:ASP279 3.7 31.5 1.0
CA A:ASP279 3.7 32.4 1.0
O A:PRO283 3.9 27.1 1.0
CA A:SER282 3.9 31.1 1.0
C A:PRO283 4.1 30.1 1.0
CA A:ILE285 4.2 25.0 1.0
CB A:ASP279 4.3 31.1 1.0
N A:SER282 4.3 28.7 1.0
N A:ILE285 4.3 27.6 1.0
CA A:ALA316 4.4 26.7 1.0
N A:PRO283 4.4 35.1 1.0
N A:GLY284 4.4 28.0 1.0
N A:TYR280 4.4 29.6 1.0
OE2 A:GLU286 4.5 30.5 1.0
CA A:GLY284 4.5 25.9 1.0
N A:ALA317 4.6 28.0 1.0
C A:ILE285 4.6 29.6 1.0
OD2 A:ASP279 4.7 26.2 1.0
CA A:PRO283 4.7 30.8 1.0
O A:SER278 4.8 35.8 1.0
CA A:ALA317 4.8 28.2 1.0
N A:GLU286 4.8 24.4 1.0
CB A:ALA316 4.8 27.9 1.0
CA A:TYR280 4.9 33.4 1.0
N A:ASP279 5.0 36.3 1.0
CB A:ALA317 5.0 23.5 1.0

Calcium binding site 2 out of 2 in 1v2i

Go back to Calcium Binding Sites List in 1v2i
Calcium binding site 2 out of 2 in the Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1002

b:28.2
occ:1.00
O B:ASP279 2.3 31.8 1.0
O B:ALA316 2.3 23.8 1.0
O B:HOH5367 2.4 34.2 1.0
O B:SER282 2.4 29.4 1.0
O B:GLY284 2.4 27.8 1.0
OD1 B:ASP279 2.5 35.6 1.0
OG B:SER282 2.5 27.4 1.0
C B:ASP279 3.2 25.9 1.0
C B:SER282 3.3 28.5 1.0
C B:ALA316 3.5 25.4 1.0
CA B:ASP279 3.6 30.7 1.0
C B:GLY284 3.6 28.6 1.0
CG B:ASP279 3.7 33.9 1.0
CB B:SER282 3.7 26.8 1.0
CA B:SER282 3.9 25.8 1.0
N B:SER282 4.1 25.6 1.0
CB B:ASP279 4.2 32.6 1.0
O B:PRO283 4.3 27.5 1.0
CA B:ILE285 4.3 27.2 1.0
C B:PRO283 4.3 28.8 1.0
CA B:ALA316 4.3 27.2 1.0
N B:TYR280 4.4 26.5 1.0
O B:HOH5371 4.4 25.4 1.0
N B:ILE285 4.4 28.5 1.0
N B:PRO283 4.4 29.8 1.0
N B:GLY284 4.5 25.0 1.0
N B:ALA317 4.5 22.6 1.0
O B:SER278 4.6 31.8 1.0
CA B:GLY284 4.7 21.7 1.0
OD2 B:ASP279 4.7 30.6 1.0
C B:ILE285 4.7 28.8 1.0
CA B:ALA317 4.7 23.3 1.0
CA B:PRO283 4.8 27.5 1.0
CA B:TYR280 4.8 24.9 1.0
N B:ASP279 4.8 30.5 1.0
N B:GLU286 4.9 27.4 1.0
CB B:ALA317 4.9 20.1 1.0
CB B:ALA316 4.9 24.3 1.0
OE2 B:GLU286 4.9 41.7 1.0
C B:TYR280 5.0 28.5 1.0

Reference:

M.C.Lawrence, N.A.Borg, V.A.Streltsov, P.A.Pilling, V.C.Epa, J.N.Varghese, J.L.Mckimm-Breschkin, P.M.Colman. Structure of the Haemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III J.Mol.Biol. V. 335 1343 2004.
ISSN: ISSN 0022-2836
PubMed: 14729348
DOI: 10.1016/J.JMB.2003.11.032
Page generated: Sat Dec 12 03:24:05 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy