Calcium in PDB 1v9u: Human Rhinovirus 2 Bound to A Fragment of Its Cellular Receptor Protein

The structure of Human Rhinovirus 2 Bound to A Fragment of Its Cellular Receptor Protein, PDB code: 1v9u was solved by N.Verdaguer, I.Fita, M.Reithmayer, R.Moser, D.Blaas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.60
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	313.100, 348.790, 380.890, 90.00, 90.00, 90.00
R / Rfree (%)	28.5 / 29.5

The binding sites of Calcium atom in the Human Rhinovirus 2 Bound to A Fragment of Its Cellular Receptor Protein (pdb code 1v9u). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Human Rhinovirus 2 Bound to A Fragment of Its Cellular Receptor Protein, PDB code: 1v9u:

Calcium binding site 1 out of 1 in the Human Rhinovirus 2 Bound to A Fragment of Its Cellular Receptor Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Rhinovirus 2 Bound to A Fragment of Its Cellular Receptor Protein within 5.0Å range: probe atom residue distance (Å) B Occ 5:Ca1 b:46.6 occ:0.80 O 5:GLU137 2.4 54.1 0.8 OE2 5:GLU146 2.7 56.6 0.8 OD1 5:ASP135 2.7 51.3 0.8 OD2 5:ASP145 2.9 59.9 0.8 O 5:TRP132 3.0 53.9 0.8 OD1 5:ASP139 3.1 60.2 0.8 CB 5:TRP132 3.2 51.3 0.8 N 5:ASP139 3.5 58.6 0.8 C 5:GLU137 3.5 54.4 0.8 C 5:TRP132 3.6 53.8 0.8 CB 5:ASP139 3.7 60.1 0.8 CG 5:ASP139 3.7 60.2 0.8 CD 5:GLU146 3.7 57.3 0.8 CA 5:TRP132 3.8 52.6 0.8 CG 5:ASP135 3.8 52.9 0.8 CG 5:ASP145 4.0 60.3 0.8 C 5:ASN138 4.1 57.4 0.8 CA 5:ASN138 4.1 56.7 0.8 CG 5:TRP132 4.1 50.4 0.8 CG 5:GLU146 4.2 58.2 0.8 CA 5:ASP139 4.2 60.1 0.8 N 5:ASN138 4.2 55.4 0.8 OD2 5:ASP135 4.2 52.6 0.8 CD1 5:TRP132 4.4 49.7 0.8 CB 5:ASP145 4.5 60.1 0.8 CA 5:GLU137 4.6 54.0 0.8 N 5:ARG133 4.6 55.5 0.8 N 5:GLU137 4.6 54.3 0.8 OE1 5:GLU146 4.7 56.5 0.8 CB 5:GLU137 4.8 53.4 0.8 OD2 5:ASP139 4.8 60.2 0.8 N 5:ASP135 5.0 57.2 0.8

N.Verdaguer, I.Fita, M.Reithmayer, R.Moser, D.Blaas. X-Ray Structure of A Minor Group Human Rhinovirus Bound to A Fragment of Its Cellular Receptor Protein Nat.Struct.Mol.Biol. V. 11 429 2004.
ISSN: ISSN 1545-9993
PubMed: 15064754
DOI: 10.1038/NSMB753