Calcium in PDB 1vak: T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)65

The structure of T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)65, PDB code: 1vak was solved by V.Sangita, G.L.Lokesh, P.S.Satheshkumer, C.S.Vijay, V.Saravanan, H.S.Savithri, M.R.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.05
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	188.239, 193.954, 269.054, 90.00, 92.42, 90.00
R / Rfree (%)	21.1 / 21.4

The binding sites of Calcium atom in the T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)65 (pdb code 1vak). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)65, PDB code: 1vak:

Calcium binding site 1 out of 1 in the T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)65


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)65 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca375 b:8.0 occ:1.00 OD1 A:ASN267 2.3 12.5 1.0 O A:TYR207 2.4 8.3 1.0 O A:ASN268 2.4 9.6 1.0 CG A:ASN267 3.4 11.2 1.0 C A:TYR207 3.6 7.8 1.0 C A:ASN268 3.6 10.4 1.0 N A:ASN268 3.8 8.2 1.0 CE A:LYS208 4.0 7.0 1.0 ND2 A:ASN267 4.1 13.3 1.0 N A:TYR207 4.2 6.8 1.0 CA A:TYR207 4.3 6.7 1.0 C A:ASN267 4.3 7.3 1.0 CA A:ASN268 4.3 9.3 1.0 CB A:TYR207 4.4 5.9 1.0 CA A:ASN267 4.4 7.0 1.0 O A:SER116 4.4 8.4 1.0 CB A:ASN267 4.5 8.4 1.0 NZ A:LYS208 4.5 6.1 1.0 N A:LYS208 4.6 8.0 1.0 OXT A:ASN268 4.6 10.7 1.0 CD1 A:TYR207 4.6 6.6 1.0 CA A:LYS208 4.8 7.8 1.0 C A:PRO206 4.9 7.5 1.0

V.Sangita, G.L.Lokesh, P.S.Satheshkumar, C.S.Vijay, V.Saravanan, H.S.Savithri, M.R.Murthy. T=1 Capsid Structures of Sesbania Mosaic Virus Coat Protein Mutants: Determinants of T=3 and T=1 Capsid Assembly J.Mol.Biol. V. 342 987 2004.
ISSN: ISSN 0022-2836
PubMed: 15342251
DOI: 10.1016/J.JMB.2004.07.003