Calcium in PDB 1vb4: T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)36

The structure of T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)36, PDB code: 1vb4 was solved by V.Sangita, G.L.Lokesh, P.S.Satheshkumar, C.S.Vijay, V.Saravanan, H.S.Savithri, M.R.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 3.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	187.302, 193.308, 268.368, 90.00, 92.28, 90.00
R / Rfree (%)	25.5 / 25.9

The binding sites of Calcium atom in the T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)36 (pdb code 1vb4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)36, PDB code: 1vb4:

Calcium binding site 1 out of 1 in the T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)36


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of T=1 Capsid Structure of Sesbania Mosaic Virus Coat Protein Deletion Mutant Cp-N(Delta)36 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca358 b:18.0 occ:1.00 OD1 A:ASN267 2.2 22.9 1.0 O A:TYR207 2.4 23.4 1.0 O A:ASN268 2.4 23.2 1.0 CG A:ASN267 3.3 21.4 1.0 C A:TYR207 3.5 22.4 1.0 C A:ASN268 3.6 23.4 1.0 N A:ASN268 3.7 21.6 1.0 ND2 A:ASN267 4.0 22.0 1.0 CE A:LYS208 4.0 24.5 1.0 N A:TYR207 4.2 20.4 1.0 CA A:TYR207 4.2 20.9 1.0 CA A:ASN268 4.3 22.7 1.0 C A:ASN267 4.3 20.8 1.0 O A:SER116 4.3 19.8 1.0 CB A:TYR207 4.3 21.0 1.0 CA A:ASN267 4.3 20.4 1.0 CB A:ASN267 4.4 21.0 1.0 NZ A:LYS208 4.5 25.6 1.0 OXT A:ASN268 4.6 24.2 1.0 N A:LYS208 4.6 22.9 1.0 CD1 A:TYR207 4.6 20.8 1.0 CA A:LYS208 4.8 22.2 1.0 C A:PRO206 4.9 20.4 1.0

V.Sangita, G.L.Lokesh, P.S.Satheshkumar, C.S.Vijay, V.Saravanan, H.S.Savithri, M.R.Murthy. T=1 Capsid Structures of Sesbania Mosaic Virus Coat Protein Mutants: Determinants of T=3 and T=1 Capsid Assembly J.Mol.Biol. V. 342 987 2004.
ISSN: ISSN 0022-2836
PubMed: 15342251
DOI: 10.1016/J.JMB.2004.07.003