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Calcium in PDB 1vzh: Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction

Enzymatic activity of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction

All present enzymatic activity of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction:
1.15.1.2;

Protein crystallography data

The structure of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction, PDB code: 1vzh was solved by V.Adam, A.Royant, V.Niviere, F.P.Molina-Heredia, D.Bourgeois, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.49 / 1.69
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.130, 67.650, 82.190, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 25

Other elements in 1vzh:

The structure of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction also contains other interesting chemical elements:

Iron (Fe) 6 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction (pdb code 1vzh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction, PDB code: 1vzh:

Calcium binding site 1 out of 1 in 1vzh

Go back to Calcium Binding Sites List in 1vzh
Calcium binding site 1 out of 1 in the Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray Induced Photoreduction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1128

b:18.0
occ:1.00
 O B:CYS88 2.8 12.8 1.0
O A:CYS88 2.8 10.5 1.0
OG1 B:THR90 2.8 13.3 1.0
OG1 A:THR90 2.9 11.7 1.0
O B:HOH2013 3.0 20.1 1.0
O A:HOH2019 3.0 26.2 1.0
CB A:THR90 3.7 10.0 1.0
C B:CYS88 3.7 11.8 1.0
CB B:THR90 3.7 12.7 1.0
C A:CYS88 3.7 10.7 1.0
SG B:CYS88 3.8 16.9 1.0
N B:THR90 3.9 9.8 1.0
N A:THR90 3.9 8.8 1.0
SG A:CYS88 3.9 16.6 1.0
OE2 B:GLU18 4.1 19.1 1.0
CB B:CYS88 4.1 11.8 1.0
OE2 A:GLU18 4.2 23.3 1.0
CB A:CYS88 4.2 12.0 1.0
C A:TYR89 4.4 11.0 1.0
C B:TYR89 4.4 11.2 1.0
CA A:THR90 4.4 9.9 1.0
CA B:THR90 4.4 11.8 1.0
N A:TYR89 4.5 10.6 1.0
N B:TYR89 4.5 9.8 1.0
CA A:TYR89 4.5 11.2 1.0
CA B:TYR89 4.5 11.4 1.0
CA B:CYS88 4.6 13.0 1.0
OE2 B:GLU81 4.6 15.7 1.0
CA A:CYS88 4.6 11.6 1.0
OE2 A:GLU81 4.7 15.8 1.0
CG2 B:THR90 5.0 11.6 1.0
CG2 A:THR90 5.0 11.6 1.0

Reference:

V.Adam, A.Royant, V.Niviere, F.P.Molina-Heredia, D.Bourgeois. Structure of Superoxide Reductase Bound to Ferrocyanide and Active Site Expansion Upon X-Ray-Induced Photo-Reduction. Structure V. 12 1729 2004.
ISSN: ISSN 0969-2126
PubMed: 15341736
DOI: 10.1016/J.STR.2004.07.013
Page generated: Fri Jul 12 06:56:54 2024

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