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Calcium in PDB 1x1n: Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato

Enzymatic activity of Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato

All present enzymatic activity of Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato:
2.4.1.25;

Protein crystallography data

The structure of Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato, PDB code: 1x1n was solved by K.Imamura, T.Matsuura, T.Takaha, K.Fujii, A.Nakagawa, M.Kusunoki, Y.Nitta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.04 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 69.869, 120.535, 174.382, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 21

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato (pdb code 1x1n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato, PDB code: 1x1n:

Calcium binding site 1 out of 1 in 1x1n

Go back to Calcium Binding Sites List in 1x1n
Calcium binding site 1 out of 1 in the Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2001

b:17.7
occ:1.00
 O A:HOH2290 2.2 28.1 1.0
OD1 A:ASN180 2.3 15.1 1.0
O A:HOH2059 2.4 17.5 1.0
O A:HOH2044 2.4 15.3 1.0
O A:HOH2002 2.5 28.3 1.0
O A:HOH2087 2.6 21.7 1.0
O A:HOH2258 2.6 30.0 1.0
CG A:ASN180 3.5 15.2 1.0
O A:HOH2658 4.2 59.4 1.0
O A:HOH2659 4.2 58.4 1.0
ND2 A:ASN180 4.3 13.8 1.0
O A:HOH2129 4.3 21.9 1.0
O A:HOH2012 4.3 17.8 1.0
O A:HOH2340 4.5 38.2 1.0
NE A:ARG76 4.5 49.7 1.0
CB A:ASN180 4.5 14.0 1.0
CA A:ASN180 4.5 14.2 1.0
CD A:ARG76 4.6 48.0 1.0
OD2 A:ASP176 4.6 18.7 1.0
OD1 A:ASP176 4.7 14.3 1.0
O A:THR181 4.8 15.8 1.0
C A:ASN180 4.9 14.2 1.0

Reference:

K.Imamura, T.Matsuura, T.Takaha, K.Fujii, A.Nakagawa, M.Kusunoki, Y.Nitta. Structure Determination and Refinement at 1.8 A Resolution of Disproportionating Enzyme From Potato To Be Published.
Page generated: Sat Dec 12 03:26:31 2020

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