Calcium in PDB 1xfe: Solution Structure of the LA7-Egfa Pair From the Ldl Receptor

The binding sites of Calcium atom in the Solution Structure of the LA7-Egfa Pair From the Ldl Receptor (pdb code 1xfe). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of the LA7-Egfa Pair From the Ldl Receptor, PDB code: 1xfe:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of the LA7-Egfa Pair From the Ldl Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of the LA7-Egfa Pair From the Ldl Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca100 b:0.0 occ:1.00 H A:CYS26 1.9 0.0 1.0 HA A:VAL25 1.9 0.0 1.0 H A:ASN27 2.1 0.0 1.0 OE2 A:GLU38 2.1 0.0 1.0 O A:LYS24 2.3 0.0 1.0 N A:CYS26 2.4 0.0 1.0 OD2 A:ASP31 2.4 0.0 1.0 CA A:VAL25 2.7 0.0 1.0 C A:VAL25 2.7 0.0 1.0 OD1 A:ASN27 2.8 0.0 1.0 OD1 A:ASP37 2.8 0.0 1.0 N A:ASN27 3.0 0.0 1.0 HD2 A:LYS24 3.1 0.0 1.0 HG3 A:GLU38 3.1 0.0 1.0 C A:LYS24 3.1 0.0 1.0 CD A:GLU38 3.2 0.0 1.0 N A:VAL25 3.3 0.0 1.0 CA A:CYS26 3.4 0.0 1.0 CG A:ASN27 3.4 0.0 1.0 CG A:ASP31 3.6 0.0 1.0 HA A:CYS26 3.6 0.0 1.0 CG A:GLU38 3.7 0.0 1.0 C A:CYS26 3.7 0.0 1.0 CG A:ASP37 3.7 0.0 1.0 HB3 A:ASN27 3.7 0.0 1.0 O A:VAL25 3.8 0.0 1.0 HG11 A:VAL25 3.9 0.0 1.0 CB A:ASN27 3.9 0.0 1.0 CB A:VAL25 4.0 0.0 1.0 HB2 A:ASP31 4.0 0.0 1.0 CA A:ASN27 4.1 0.0 1.0 CD A:LYS24 4.1 0.0 1.0 HG2 A:GLU38 4.1 0.0 1.0 HE3 A:LYS24 4.2 0.0 1.0 H A:VAL25 4.2 0.0 1.0 ND2 A:ASN27 4.3 0.0 1.0 HZ2 A:LYS24 4.3 0.0 1.0 HG21 A:VAL25 4.3 0.0 1.0 OD2 A:ASP37 4.3 0.0 1.0 OE1 A:GLU38 4.3 0.0 1.0 HB3 A:ASP37 4.3 0.0 1.0 HG22 A:VAL25 4.3 0.0 1.0 CB A:ASP31 4.4 0.0 1.0 HB2 A:LYS24 4.4 0.0 1.0 HD22 A:ASN27 4.4 0.0 1.0 OD1 A:ASP31 4.4 0.0 1.0 O A:ASP37 4.4 0.0 1.0 CG2 A:VAL25 4.5 0.0 1.0 CG1 A:VAL25 4.5 0.0 1.0 CA A:LYS24 4.5 0.0 1.0 HA A:GLU38 4.6 0.0 1.0 CE A:LYS24 4.6 0.0 1.0 CB A:ASP37 4.6 0.0 1.0 HD3 A:LYS24 4.7 0.0 1.0 HA A:ASN27 4.7 0.0 1.0 C A:ASP37 4.7 0.0 1.0 CB A:CYS26 4.7 0.0 1.0 HB A:VAL25 4.8 0.0 1.0 HB3 A:ASP31 4.8 0.0 1.0 CB A:LYS24 4.8 0.0 1.0 NZ A:LYS24 4.9 0.0 1.0 O A:CYS26 4.9 0.0 1.0 CB A:GLU38 4.9 0.0 1.0 HD21 A:ASN27 4.9 0.0 1.0 HB3 A:CYS26 5.0 0.0 1.0 CG A:LYS24 5.0 0.0 1.0 HB2 A:CYS26 5.0 0.0 1.0 HB2 A:ASN27 5.0 0.0 1.0 HG12 A:VAL25 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Solution Structure of the LA7-Egfa Pair From the Ldl Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of the LA7-Egfa Pair From the Ldl Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca200 b:0.0 occ:1.00 HG1 A:THR45 1.9 0.0 1.0 HB A:THR45 2.6 0.0 1.0 OD1 A:ASP61 2.7 0.0 1.0 O A:GLU42 2.7 0.0 1.0 OG1 A:THR45 2.8 0.0 1.0 O A:LEU62 2.8 0.0 1.0 OE1 A:GLU47 2.8 0.0 1.0 HA A:GLU42 3.0 0.0 1.0 H A:THR45 3.1 0.0 1.0 CB A:THR45 3.2 0.0 1.0 O A:THR45 3.3 0.0 1.0 C A:GLU42 3.4 0.0 1.0 HB3 A:GLU42 3.6 0.0 1.0 CA A:GLU42 3.6 0.0 1.0 N A:THR45 3.7 0.0 1.0 HB3 A:TYR66 3.8 0.0 1.0 CA A:THR45 3.8 0.0 1.0 CG A:ASP61 3.9 0.0 1.0 C A:LEU62 4.0 0.0 1.0 H A:GLY65 4.0 0.0 1.0 CD A:GLU47 4.0 0.0 1.0 C A:THR45 4.0 0.0 1.0 HA A:LYS63 4.0 0.0 1.0 HB3 A:ASP61 4.1 0.0 1.0 CB A:GLU42 4.2 0.0 1.0 HD2 A:TYR66 4.3 0.0 1.0 OE1 A:GLU42 4.4 0.0 1.0 H A:LEU62 4.4 0.0 1.0 N A:CYS43 4.4 0.0 1.0 CB A:ASP61 4.5 0.0 1.0 CG2 A:THR45 4.5 0.0 1.0 N A:LEU62 4.5 0.0 1.0 HG3 A:GLU47 4.5 0.0 1.0 HG22 A:THR45 4.5 0.0 1.0 H A:GLY44 4.6 0.0 1.0 HA A:ASP61 4.6 0.0 1.0 C A:ASP61 4.7 0.0 1.0 CB A:TYR66 4.7 0.0 1.0 CD2 A:TYR66 4.7 0.0 1.0 O A:LYS41 4.7 0.0 1.0 H A:GLU47 4.7 0.0 1.0 HA2 A:GLY65 4.7 0.0 1.0 CA A:LYS63 4.8 0.0 1.0 HA A:CYS43 4.8 0.0 1.0 N A:TYR66 4.8 0.0 1.0 OE2 A:GLU47 4.8 0.0 1.0 N A:GLY44 4.8 0.0 1.0 N A:GLY65 4.8 0.0 1.0 H A:TYR66 4.8 0.0 1.0 N A:LYS63 4.8 0.0 1.0 HB2 A:GLU42 4.8 0.0 1.0 CG A:TYR66 4.9 0.0 1.0 C A:GLY65 4.9 0.0 1.0 HA A:THR45 4.9 0.0 1.0 OD2 A:ASP61 4.9 0.0 1.0 CA A:ASP61 4.9 0.0 1.0 C A:LYS63 4.9 0.0 1.0 C A:GLY44 4.9 0.0 1.0 CA A:LEU62 4.9 0.0 1.0 CG A:GLU47 4.9 0.0 1.0 O A:LYS63 4.9 0.0 1.0 N A:GLU42 4.9 0.0 1.0 HG23 A:THR45 4.9 0.0 1.0 C A:CYS43 5.0 0.0 1.0 CA A:CYS43 5.0 0.0 1.0

N.Beglova, H.Jeon, C.Fisher, S.C.Blacklow. Cooperation Between Fixed and Low pH-Inducible Interfaces Controls Lipoprotein Release By the Ldl Receptor Mol.Cell V. 16 281 2004.
ISSN: ISSN 1097-2765
PubMed: 15494314
DOI: 10.1016/J.MOLCEL.2004.09.038