Calcium in PDB 1xfu: Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Enzymatic activity of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
All present enzymatic activity of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin:
4.6.1.1;
Protein crystallography data
The structure of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin, PDB code: 1xfu
was solved by
Y.Shen,
N.L.Zhukovskaya,
Q.Guo,
J.Florian,
W.J.Tang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.99 /
3.35
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
317.562,
183.108,
141.117,
90.00,
90.05,
90.00
|
R / Rfree (%)
|
28.3 /
30
|
Other elements in 1xfu:
The structure of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
(pdb code 1xfu). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 18 binding sites of Calcium where determined in the
Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin, PDB code: 1xfu:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 1 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca701
b:83.5
occ:1.00
|
O
|
O:THR26
|
2.4
|
62.5
|
1.0
|
OD1
|
O:ASP22
|
2.4
|
71.8
|
1.0
|
OD1
|
O:ASP24
|
2.4
|
63.3
|
1.0
|
OD2
|
O:ASP24
|
2.8
|
62.2
|
1.0
|
CG
|
O:ASP24
|
2.9
|
62.6
|
1.0
|
OD2
|
O:ASP20
|
3.0
|
56.7
|
1.0
|
CG
|
O:ASP22
|
3.0
|
70.0
|
1.0
|
OD2
|
O:ASP22
|
3.0
|
71.5
|
1.0
|
C
|
O:THR26
|
3.4
|
63.0
|
1.0
|
OG1
|
O:THR26
|
3.5
|
60.8
|
1.0
|
O
|
O:ASP22
|
3.9
|
57.3
|
1.0
|
OE2
|
O:GLU31
|
4.1
|
72.2
|
1.0
|
CG
|
O:ASP20
|
4.2
|
57.4
|
1.0
|
N
|
O:THR26
|
4.2
|
62.1
|
1.0
|
CA
|
O:THR26
|
4.3
|
63.0
|
1.0
|
N
|
O:ILE27
|
4.3
|
63.4
|
1.0
|
CA
|
O:ILE27
|
4.3
|
65.7
|
1.0
|
CB
|
O:ASP24
|
4.4
|
60.7
|
1.0
|
CB
|
O:ASP22
|
4.5
|
66.3
|
1.0
|
CB
|
O:THR26
|
4.5
|
62.2
|
1.0
|
C
|
O:ASP22
|
4.6
|
59.8
|
1.0
|
N
|
O:ASP24
|
4.6
|
59.2
|
1.0
|
OD1
|
O:ASP20
|
4.7
|
54.8
|
1.0
|
N
|
O:GLY25
|
4.8
|
59.9
|
1.0
|
OE1
|
O:GLU31
|
4.9
|
74.6
|
1.0
|
N
|
O:THR28
|
4.9
|
68.3
|
1.0
|
CA
|
O:ASP22
|
4.9
|
62.5
|
1.0
|
CD
|
O:GLU31
|
4.9
|
73.8
|
1.0
|
C
|
O:ILE27
|
5.0
|
66.7
|
1.0
|
N
|
O:ASP22
|
5.0
|
63.5
|
1.0
|
|
Calcium binding site 2 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 2 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca801
b:29.3
occ:1.00
|
OD1
|
O:ASP133
|
2.1
|
46.6
|
1.0
|
OE1
|
O:GLU140
|
2.1
|
37.2
|
1.0
|
O
|
O:GLN135
|
2.2
|
45.0
|
1.0
|
OD2
|
O:ASP129
|
2.3
|
43.5
|
1.0
|
OD1
|
O:ASP131
|
2.4
|
40.6
|
1.0
|
CG
|
O:ASP133
|
2.9
|
47.3
|
1.0
|
CD
|
O:GLU140
|
2.9
|
38.8
|
1.0
|
CG
|
O:ASP129
|
3.0
|
45.0
|
1.0
|
OE2
|
O:GLU140
|
3.2
|
39.3
|
1.0
|
OD2
|
O:ASP133
|
3.2
|
47.6
|
1.0
|
OD1
|
O:ASP129
|
3.3
|
46.3
|
1.0
|
CG
|
O:ASP131
|
3.4
|
38.6
|
1.0
|
C
|
O:GLN135
|
3.4
|
43.3
|
1.0
|
OD2
|
O:ASP131
|
3.6
|
35.2
|
1.0
|
N
|
O:GLN135
|
4.1
|
44.7
|
1.0
|
N
|
O:ASP133
|
4.1
|
44.5
|
1.0
|
CB
|
O:ASP129
|
4.2
|
43.2
|
1.0
|
CB
|
O:ASP133
|
4.2
|
47.1
|
1.0
|
N
|
O:VAL136
|
4.3
|
43.3
|
1.0
|
CA
|
O:GLN135
|
4.3
|
42.1
|
1.0
|
CA
|
O:VAL136
|
4.3
|
41.5
|
1.0
|
CG
|
O:GLU140
|
4.3
|
39.2
|
1.0
|
CA
|
O:ASP129
|
4.5
|
43.6
|
1.0
|
N
|
O:ASP131
|
4.5
|
37.6
|
1.0
|
CA
|
O:ASP133
|
4.5
|
45.7
|
1.0
|
ND2
|
O:ASN137
|
4.5
|
41.1
|
1.0
|
CG
|
O:GLN135
|
4.6
|
36.3
|
1.0
|
N
|
O:ASN137
|
4.7
|
40.8
|
1.0
|
C
|
O:ASP133
|
4.7
|
46.2
|
1.0
|
N
|
O:ILE130
|
4.7
|
41.3
|
1.0
|
CB
|
O:ASP131
|
4.7
|
38.1
|
1.0
|
N
|
O:GLY132
|
4.7
|
42.5
|
1.0
|
N
|
O:GLY134
|
4.8
|
45.1
|
1.0
|
C
|
O:VAL136
|
4.9
|
40.9
|
1.0
|
CA
|
O:ASP131
|
4.9
|
39.4
|
1.0
|
C
|
O:ASP131
|
5.0
|
41.1
|
1.0
|
|
Calcium binding site 3 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 3 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca802
b:44.5
occ:1.00
|
OE1
|
O:GLU104
|
1.9
|
34.8
|
1.0
|
ND2
|
O:ASN97
|
2.1
|
44.4
|
1.0
|
OD1
|
O:ASP95
|
2.1
|
49.6
|
1.0
|
O
|
O:TYR99
|
2.2
|
39.3
|
1.0
|
OD1
|
O:ASN97
|
2.2
|
47.0
|
1.0
|
CG
|
O:ASN97
|
2.4
|
45.1
|
1.0
|
CD
|
O:GLU104
|
2.8
|
35.8
|
1.0
|
OD1
|
O:ASP93
|
2.9
|
39.8
|
1.0
|
OE2
|
O:GLU104
|
3.1
|
32.8
|
1.0
|
CG
|
O:ASP95
|
3.1
|
48.6
|
1.0
|
C
|
O:TYR99
|
3.3
|
37.1
|
1.0
|
OD2
|
O:ASP95
|
3.5
|
50.3
|
1.0
|
CG
|
O:ASP93
|
3.8
|
42.1
|
1.0
|
CB
|
O:ASN97
|
3.9
|
44.6
|
1.0
|
N
|
O:ILE100
|
4.1
|
36.6
|
1.0
|
CA
|
O:ILE100
|
4.1
|
36.4
|
1.0
|
CA
|
O:ASP93
|
4.1
|
37.2
|
1.0
|
CA
|
O:TYR99
|
4.2
|
35.0
|
1.0
|
N
|
O:TYR99
|
4.2
|
34.8
|
1.0
|
CG
|
O:GLU104
|
4.2
|
35.6
|
1.0
|
N
|
O:ASN97
|
4.4
|
47.8
|
1.0
|
N
|
O:ASP95
|
4.4
|
46.0
|
1.0
|
CB
|
O:ASP93
|
4.4
|
40.1
|
1.0
|
N
|
O:SER101
|
4.4
|
35.6
|
1.0
|
CB
|
O:ASP95
|
4.4
|
46.9
|
1.0
|
C
|
O:ASP93
|
4.5
|
39.6
|
1.0
|
CB
|
O:TYR99
|
4.5
|
32.5
|
1.0
|
OG
|
O:SER101
|
4.5
|
34.5
|
1.0
|
C
|
O:ILE100
|
4.6
|
36.0
|
1.0
|
CA
|
O:ASN97
|
4.6
|
45.1
|
1.0
|
N
|
O:LYS94
|
4.7
|
41.7
|
1.0
|
OD2
|
O:ASP93
|
4.7
|
42.8
|
1.0
|
C
|
O:ASN97
|
4.9
|
44.9
|
1.0
|
N
|
O:GLY96
|
4.9
|
48.1
|
1.0
|
CA
|
O:ASP95
|
4.9
|
46.3
|
1.0
|
O
|
O:ASP93
|
5.0
|
40.9
|
1.0
|
|
Calcium binding site 4 out
of 18 in 1xfu
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Calcium Binding Sites List in 1xfu
Calcium binding site 4 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca703
b:71.8
occ:1.00
|
O
|
P:THR26
|
2.4
|
63.4
|
1.0
|
OD1
|
P:ASP22
|
2.4
|
71.4
|
1.0
|
OD1
|
P:ASP24
|
2.5
|
63.0
|
1.0
|
OD2
|
P:ASP24
|
2.9
|
61.9
|
1.0
|
CG
|
P:ASP24
|
3.0
|
62.6
|
1.0
|
OD2
|
P:ASP20
|
3.0
|
55.7
|
1.0
|
CG
|
P:ASP22
|
3.0
|
69.5
|
1.0
|
OD2
|
P:ASP22
|
3.0
|
70.8
|
1.0
|
C
|
P:THR26
|
3.4
|
63.7
|
1.0
|
OG1
|
P:THR26
|
3.6
|
60.2
|
1.0
|
O
|
P:ASP22
|
4.0
|
58.2
|
1.0
|
OE2
|
P:GLU31
|
4.1
|
71.7
|
1.0
|
CG
|
P:ASP20
|
4.2
|
56.6
|
1.0
|
N
|
P:THR26
|
4.2
|
61.8
|
1.0
|
N
|
P:ILE27
|
4.3
|
64.3
|
1.0
|
CA
|
P:ILE27
|
4.3
|
66.3
|
1.0
|
CA
|
P:THR26
|
4.3
|
63.0
|
1.0
|
CB
|
P:ASP22
|
4.5
|
66.1
|
1.0
|
CB
|
P:ASP24
|
4.5
|
60.9
|
1.0
|
CB
|
P:THR26
|
4.6
|
61.9
|
1.0
|
C
|
P:ASP22
|
4.6
|
60.6
|
1.0
|
OD1
|
P:ASP20
|
4.7
|
53.9
|
1.0
|
N
|
P:ASP24
|
4.7
|
59.4
|
1.0
|
OE1
|
P:GLU31
|
4.8
|
74.1
|
1.0
|
N
|
P:THR28
|
4.8
|
68.8
|
1.0
|
N
|
P:GLY25
|
4.9
|
59.5
|
1.0
|
CD
|
P:GLU31
|
4.9
|
73.4
|
1.0
|
C
|
P:ILE27
|
4.9
|
67.4
|
1.0
|
CA
|
P:ASP22
|
4.9
|
63.1
|
1.0
|
N
|
P:ASP22
|
5.0
|
64.1
|
1.0
|
|
Calcium binding site 5 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 5 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca803
b:33.6
occ:1.00
|
OE1
|
P:GLU140
|
2.1
|
39.1
|
1.0
|
OD1
|
P:ASP133
|
2.1
|
46.9
|
1.0
|
O
|
P:GLN135
|
2.2
|
43.7
|
1.0
|
OD2
|
P:ASP129
|
2.3
|
42.6
|
1.0
|
OD1
|
P:ASP131
|
2.4
|
38.7
|
1.0
|
CG
|
P:ASP133
|
2.9
|
47.8
|
1.0
|
CD
|
P:GLU140
|
2.9
|
40.4
|
1.0
|
CG
|
P:ASP129
|
3.0
|
44.5
|
1.0
|
OE2
|
P:GLU140
|
3.1
|
40.6
|
1.0
|
OD2
|
P:ASP133
|
3.2
|
48.6
|
1.0
|
OD1
|
P:ASP129
|
3.3
|
46.8
|
1.0
|
CG
|
P:ASP131
|
3.4
|
38.5
|
1.0
|
C
|
P:GLN135
|
3.4
|
42.5
|
1.0
|
OD2
|
P:ASP131
|
3.6
|
36.5
|
1.0
|
N
|
P:GLN135
|
4.1
|
44.4
|
1.0
|
N
|
P:ASP133
|
4.1
|
43.8
|
1.0
|
CB
|
P:ASP129
|
4.2
|
43.5
|
1.0
|
CB
|
P:ASP133
|
4.2
|
47.2
|
1.0
|
N
|
P:VAL136
|
4.3
|
42.5
|
1.0
|
CG
|
P:GLU140
|
4.3
|
40.2
|
1.0
|
CA
|
P:VAL136
|
4.3
|
40.9
|
1.0
|
CA
|
P:GLN135
|
4.3
|
42.0
|
1.0
|
CA
|
P:ASP129
|
4.5
|
43.9
|
1.0
|
N
|
P:ASP131
|
4.5
|
37.2
|
1.0
|
CA
|
P:ASP133
|
4.5
|
45.0
|
1.0
|
ND2
|
P:ASN137
|
4.5
|
40.5
|
1.0
|
N
|
P:ASN137
|
4.7
|
41.3
|
1.0
|
CG
|
P:GLN135
|
4.7
|
36.5
|
1.0
|
N
|
P:ILE130
|
4.7
|
41.5
|
1.0
|
C
|
P:ASP133
|
4.7
|
45.8
|
1.0
|
CB
|
P:ASP131
|
4.7
|
38.1
|
1.0
|
N
|
P:GLY132
|
4.7
|
42.6
|
1.0
|
N
|
P:GLY134
|
4.8
|
44.6
|
1.0
|
C
|
P:VAL136
|
4.9
|
40.6
|
1.0
|
CA
|
P:ASP131
|
4.9
|
39.4
|
1.0
|
C
|
P:ASP131
|
5.0
|
41.0
|
1.0
|
|
Calcium binding site 6 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 6 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca804
b:43.3
occ:1.00
|
OE1
|
P:GLU104
|
1.9
|
33.9
|
1.0
|
ND2
|
P:ASN97
|
2.1
|
45.8
|
1.0
|
OD1
|
P:ASP95
|
2.1
|
47.2
|
1.0
|
O
|
P:TYR99
|
2.1
|
37.7
|
1.0
|
OD1
|
P:ASN97
|
2.2
|
48.0
|
1.0
|
CG
|
P:ASN97
|
2.5
|
46.1
|
1.0
|
CD
|
P:GLU104
|
2.8
|
35.0
|
1.0
|
OD1
|
P:ASP93
|
2.8
|
39.0
|
1.0
|
OE2
|
P:GLU104
|
3.1
|
31.3
|
1.0
|
CG
|
P:ASP95
|
3.1
|
47.2
|
1.0
|
C
|
P:TYR99
|
3.2
|
36.4
|
1.0
|
OD2
|
P:ASP95
|
3.5
|
46.9
|
1.0
|
CG
|
P:ASP93
|
3.8
|
41.6
|
1.0
|
CB
|
P:ASN97
|
4.0
|
45.3
|
1.0
|
N
|
P:ILE100
|
4.1
|
36.6
|
1.0
|
CA
|
P:ILE100
|
4.1
|
36.5
|
1.0
|
CA
|
P:TYR99
|
4.2
|
34.4
|
1.0
|
N
|
P:TYR99
|
4.2
|
34.8
|
1.0
|
CA
|
P:ASP93
|
4.2
|
36.9
|
1.0
|
CG
|
P:GLU104
|
4.2
|
34.4
|
1.0
|
N
|
P:ASN97
|
4.4
|
48.5
|
1.0
|
CB
|
P:ASP93
|
4.4
|
39.1
|
1.0
|
N
|
P:ASP95
|
4.4
|
45.7
|
1.0
|
C
|
P:ASP93
|
4.4
|
39.0
|
1.0
|
N
|
P:SER101
|
4.4
|
36.7
|
1.0
|
CB
|
P:ASP95
|
4.5
|
46.5
|
1.0
|
CB
|
P:TYR99
|
4.5
|
31.6
|
1.0
|
OG
|
P:SER101
|
4.5
|
33.7
|
1.0
|
C
|
P:ILE100
|
4.6
|
36.8
|
1.0
|
N
|
P:LYS94
|
4.6
|
41.6
|
1.0
|
CA
|
P:ASN97
|
4.7
|
45.6
|
1.0
|
OD2
|
P:ASP93
|
4.7
|
43.8
|
1.0
|
C
|
P:ASN97
|
4.9
|
44.7
|
1.0
|
N
|
P:GLY96
|
4.9
|
47.8
|
1.0
|
CA
|
P:ASP95
|
4.9
|
46.2
|
1.0
|
O
|
P:ASP93
|
4.9
|
39.4
|
1.0
|
|
Calcium binding site 7 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 7 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Ca705
b:79.2
occ:1.00
|
O
|
Q:THR26
|
2.4
|
62.9
|
1.0
|
OD1
|
Q:ASP24
|
2.4
|
63.5
|
1.0
|
OD1
|
Q:ASP22
|
2.5
|
71.4
|
1.0
|
OD2
|
Q:ASP24
|
2.7
|
62.2
|
1.0
|
CG
|
Q:ASP24
|
2.9
|
62.4
|
1.0
|
OD2
|
Q:ASP22
|
3.0
|
71.5
|
1.0
|
CG
|
Q:ASP22
|
3.0
|
69.5
|
1.0
|
OD2
|
Q:ASP20
|
3.1
|
55.2
|
1.0
|
C
|
Q:THR26
|
3.5
|
63.3
|
1.0
|
OG1
|
Q:THR26
|
3.5
|
60.0
|
1.0
|
O
|
Q:ASP22
|
4.0
|
57.3
|
1.0
|
N
|
Q:THR26
|
4.2
|
61.4
|
1.0
|
OE2
|
Q:GLU31
|
4.2
|
70.8
|
1.0
|
CG
|
Q:ASP20
|
4.2
|
56.2
|
1.0
|
CA
|
Q:THR26
|
4.3
|
62.6
|
1.0
|
N
|
Q:ILE27
|
4.3
|
64.0
|
1.0
|
CB
|
Q:ASP24
|
4.4
|
60.6
|
1.0
|
CA
|
Q:ILE27
|
4.4
|
65.7
|
1.0
|
CB
|
Q:ASP22
|
4.5
|
66.1
|
1.0
|
CB
|
Q:THR26
|
4.5
|
61.5
|
1.0
|
C
|
Q:ASP22
|
4.6
|
60.1
|
1.0
|
N
|
Q:ASP24
|
4.6
|
58.7
|
1.0
|
OD1
|
Q:ASP20
|
4.7
|
52.8
|
1.0
|
N
|
Q:GLY25
|
4.8
|
59.4
|
1.0
|
N
|
Q:THR28
|
4.9
|
68.6
|
1.0
|
CA
|
Q:ASP22
|
5.0
|
62.9
|
1.0
|
OE1
|
Q:GLU31
|
5.0
|
74.6
|
1.0
|
C
|
Q:ILE27
|
5.0
|
67.0
|
1.0
|
|
Calcium binding site 8 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 8 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Ca805
b:32.6
occ:1.00
|
OE1
|
Q:GLU140
|
2.1
|
36.5
|
1.0
|
OD1
|
Q:ASP133
|
2.1
|
46.7
|
1.0
|
O
|
Q:GLN135
|
2.2
|
44.5
|
1.0
|
OD2
|
Q:ASP129
|
2.3
|
42.0
|
1.0
|
OD1
|
Q:ASP131
|
2.4
|
42.9
|
1.0
|
CD
|
Q:GLU140
|
2.9
|
38.1
|
1.0
|
CG
|
Q:ASP129
|
2.9
|
44.4
|
1.0
|
CG
|
Q:ASP133
|
3.0
|
47.5
|
1.0
|
OE2
|
Q:GLU140
|
3.1
|
39.3
|
1.0
|
OD1
|
Q:ASP129
|
3.2
|
46.8
|
1.0
|
OD2
|
Q:ASP133
|
3.3
|
47.9
|
1.0
|
CG
|
Q:ASP131
|
3.4
|
40.1
|
1.0
|
C
|
Q:GLN135
|
3.4
|
42.5
|
1.0
|
OD2
|
Q:ASP131
|
3.7
|
37.1
|
1.0
|
N
|
Q:GLN135
|
4.1
|
44.0
|
1.0
|
CB
|
Q:ASP129
|
4.1
|
42.8
|
1.0
|
N
|
Q:ASP133
|
4.1
|
44.3
|
1.0
|
CB
|
Q:ASP133
|
4.3
|
47.4
|
1.0
|
N
|
Q:VAL136
|
4.3
|
42.3
|
1.0
|
CG
|
Q:GLU140
|
4.3
|
37.5
|
1.0
|
CA
|
Q:VAL136
|
4.3
|
40.8
|
1.0
|
CA
|
Q:GLN135
|
4.3
|
41.8
|
1.0
|
CA
|
Q:ASP129
|
4.4
|
43.1
|
1.0
|
N
|
Q:ASP131
|
4.5
|
36.6
|
1.0
|
CA
|
Q:ASP133
|
4.5
|
45.6
|
1.0
|
ND2
|
Q:ASN137
|
4.6
|
40.4
|
1.0
|
N
|
Q:ILE130
|
4.6
|
41.5
|
1.0
|
N
|
Q:ASN137
|
4.7
|
40.9
|
1.0
|
CB
|
Q:ASP131
|
4.7
|
38.4
|
1.0
|
C
|
Q:ASP133
|
4.7
|
46.6
|
1.0
|
CG
|
Q:GLN135
|
4.7
|
37.2
|
1.0
|
N
|
Q:GLY132
|
4.7
|
42.0
|
1.0
|
N
|
Q:GLY134
|
4.8
|
45.4
|
1.0
|
CA
|
Q:ASP131
|
4.9
|
38.9
|
1.0
|
C
|
Q:VAL136
|
4.9
|
40.5
|
1.0
|
C
|
Q:ASP131
|
4.9
|
40.4
|
1.0
|
|
Calcium binding site 9 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 9 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Ca806
b:46.4
occ:1.00
|
OE1
|
Q:GLU104
|
1.9
|
33.7
|
1.0
|
ND2
|
Q:ASN97
|
2.1
|
44.8
|
1.0
|
OD1
|
Q:ASP95
|
2.1
|
48.9
|
1.0
|
O
|
Q:TYR99
|
2.2
|
39.3
|
1.0
|
OD1
|
Q:ASN97
|
2.2
|
46.1
|
1.0
|
CG
|
Q:ASN97
|
2.4
|
45.4
|
1.0
|
OD1
|
Q:ASP93
|
2.8
|
38.1
|
1.0
|
CD
|
Q:GLU104
|
2.9
|
34.9
|
1.0
|
CG
|
Q:ASP95
|
3.1
|
47.9
|
1.0
|
OE2
|
Q:GLU104
|
3.1
|
33.3
|
1.0
|
C
|
Q:TYR99
|
3.3
|
36.8
|
1.0
|
OD2
|
Q:ASP95
|
3.4
|
48.4
|
1.0
|
CG
|
Q:ASP93
|
3.8
|
41.5
|
1.0
|
CB
|
Q:ASN97
|
3.9
|
44.7
|
1.0
|
N
|
Q:ILE100
|
4.1
|
36.4
|
1.0
|
N
|
Q:TYR99
|
4.1
|
35.1
|
1.0
|
CA
|
Q:TYR99
|
4.1
|
35.1
|
1.0
|
CA
|
Q:ILE100
|
4.2
|
35.9
|
1.0
|
CA
|
Q:ASP93
|
4.2
|
38.0
|
1.0
|
CG
|
Q:GLU104
|
4.2
|
35.2
|
1.0
|
N
|
Q:ASN97
|
4.4
|
47.8
|
1.0
|
N
|
Q:ASP95
|
4.4
|
45.3
|
1.0
|
CB
|
Q:ASP93
|
4.4
|
39.5
|
1.0
|
N
|
Q:SER101
|
4.4
|
35.5
|
1.0
|
CB
|
Q:ASP95
|
4.5
|
46.9
|
1.0
|
C
|
Q:ASP93
|
4.5
|
40.6
|
1.0
|
CB
|
Q:TYR99
|
4.5
|
33.2
|
1.0
|
OG
|
Q:SER101
|
4.5
|
36.9
|
1.0
|
C
|
Q:ILE100
|
4.6
|
35.8
|
1.0
|
CA
|
Q:ASN97
|
4.6
|
44.8
|
1.0
|
N
|
Q:LYS94
|
4.7
|
42.5
|
1.0
|
OD2
|
Q:ASP93
|
4.7
|
43.1
|
1.0
|
C
|
Q:ASN97
|
4.8
|
44.2
|
1.0
|
N
|
Q:GLY96
|
4.9
|
48.0
|
1.0
|
CA
|
Q:ASP95
|
4.9
|
46.0
|
1.0
|
|
Calcium binding site 10 out
of 18 in 1xfu
Go back to
Calcium Binding Sites List in 1xfu
Calcium binding site 10 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Anthrax Edema Factor (Ef) Truncation Mutant, Ef- Delta 64 in Complex with Calmodulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Ca707
b:79.9
occ:1.00
|
O
|
R:THR26
|
2.4
|
62.5
|
1.0
|
OD1
|
R:ASP24
|
2.5
|
63.3
|
1.0
|
OD1
|
R:ASP22
|
2.5
|
71.5
|
1.0
|
OD2
|
R:ASP24
|
2.7
|
62.4
|
1.0
|
CG
|
R:ASP24
|
3.0
|
62.8
|
1.0
|
OD2
|
R:ASP22
|
3.0
|
71.6
|
1.0
|
CG
|
R:ASP22
|
3.1
|
69.8
|
1.0
|
OD2
|
R:ASP20
|
3.3
|
56.1
|
1.0
|
OG1
|
R:THR26
|
3.4
|
60.4
|
1.0
|
C
|
R:THR26
|
3.5
|
63.4
|
1.0
|
O
|
R:ASP22
|
4.1
|
57.3
|
1.0
|
OE2
|
R:GLU31
|
4.2
|
71.4
|
1.0
|
N
|
R:THR26
|
4.3
|
61.9
|
1.0
|
CA
|
R:THR26
|
4.3
|
62.8
|
1.0
|
N
|
R:ILE27
|
4.3
|
64.2
|
1.0
|
CA
|
R:ILE27
|
4.4
|
66.4
|
1.0
|
CG
|
R:ASP20
|
4.4
|
56.8
|
1.0
|
CB
|
R:THR26
|
4.4
|
61.5
|
1.0
|
CB
|
R:ASP24
|
4.5
|
61.4
|
1.0
|
CB
|
R:ASP22
|
4.6
|
66.2
|
1.0
|
C
|
R:ASP22
|
4.8
|
60.3
|
1.0
|
N
|
R:ASP24
|
4.8
|
59.0
|
1.0
|
N
|
R:THR28
|
4.8
|
68.8
|
1.0
|
C
|
R:ILE27
|
4.9
|
67.6
|
1.0
|
OD1
|
R:ASP20
|
4.9
|
54.1
|
1.0
|
N
|
R:GLY25
|
4.9
|
60.1
|
1.0
|
OE1
|
R:GLU31
|
5.0
|
73.6
|
1.0
|
|
Reference:
Y.Shen,
N.L.Zhukovskaya,
Q.Guo,
J.Florian,
W.J.Tang.
Calcium-Independent Calmodulin Binding and Two-Metal-Ion Catalytic Mechanism of Anthrax Edema Factor. Embo J. V. 24 929 2005.
ISSN: ISSN 0261-4189
PubMed: 15719022
DOI: 10.1038/SJ.EMBOJ.7600574
Page generated: Fri Jul 12 07:29:55 2024
|