Calcium in PDB 1xfw: Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Enzymatic activity of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
All present enzymatic activity of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp):
4.6.1.1;
Protein crystallography data
The structure of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp), PDB code: 1xfw
was solved by
Y.Shen,
N.L.Zhukovskaya,
Q.Guo,
J.Florian,
W.J.Tang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.68 /
3.40
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
320.501,
185.044,
142.454,
90.00,
90.22,
90.00
|
R / Rfree (%)
|
26.6 /
28.3
|
Other elements in 1xfw:
The structure of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
(pdb code 1xfw). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 18 binding sites of Calcium where determined in the
Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp), PDB code: 1xfw:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 1 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca701
b:81.8
occ:1.00
|
O
|
O:THR26
|
2.2
|
67.5
|
1.0
|
OD1
|
O:ASP24
|
2.3
|
70.1
|
1.0
|
OD1
|
O:ASP22
|
2.3
|
76.8
|
1.0
|
OD2
|
O:ASP20
|
2.4
|
54.5
|
1.0
|
OD2
|
O:ASP22
|
2.6
|
77.8
|
1.0
|
CG
|
O:ASP22
|
2.7
|
75.5
|
1.0
|
CG
|
O:ASP24
|
3.0
|
67.7
|
1.0
|
OD2
|
O:ASP24
|
3.2
|
65.3
|
1.0
|
C
|
O:THR26
|
3.4
|
67.5
|
1.0
|
CG
|
O:ASP20
|
3.5
|
56.8
|
1.0
|
OG1
|
O:THR26
|
3.9
|
70.5
|
1.0
|
OD1
|
O:ASP20
|
3.9
|
56.5
|
1.0
|
N
|
O:THR26
|
4.0
|
66.7
|
1.0
|
CB
|
O:ASP22
|
4.2
|
72.8
|
1.0
|
CA
|
O:THR26
|
4.3
|
68.3
|
1.0
|
N
|
O:ILE27
|
4.3
|
66.5
|
1.0
|
N
|
O:ASP24
|
4.4
|
64.7
|
1.0
|
CA
|
O:ILE27
|
4.4
|
65.1
|
1.0
|
OE2
|
O:GLU31
|
4.4
|
73.3
|
1.0
|
CB
|
O:ASP24
|
4.4
|
66.3
|
1.0
|
N
|
O:ASP22
|
4.5
|
70.2
|
1.0
|
C
|
O:ASP22
|
4.6
|
69.2
|
1.0
|
CA
|
O:ASP22
|
4.6
|
70.1
|
1.0
|
N
|
O:GLY25
|
4.6
|
67.1
|
1.0
|
CB
|
O:ASP20
|
4.6
|
57.8
|
1.0
|
CB
|
O:THR26
|
4.7
|
68.9
|
1.0
|
CA
|
O:ASP20
|
4.8
|
57.7
|
1.0
|
O
|
O:ASP22
|
4.8
|
69.3
|
1.0
|
CA
|
O:ASP24
|
4.8
|
65.6
|
1.0
|
C
|
O:ASP20
|
5.0
|
60.8
|
1.0
|
N
|
O:GLY23
|
5.0
|
68.1
|
1.0
|
|
Calcium binding site 2 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 2 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca801
b:27.7
occ:1.00
|
OD1
|
O:ASP133
|
2.0
|
50.8
|
1.0
|
OE1
|
O:GLU140
|
2.0
|
41.0
|
1.0
|
O
|
O:GLN135
|
2.1
|
41.2
|
1.0
|
OD2
|
O:ASP129
|
2.3
|
37.9
|
1.0
|
OD1
|
O:ASP131
|
2.5
|
41.9
|
1.0
|
CG
|
O:ASP133
|
3.0
|
50.0
|
1.0
|
CD
|
O:GLU140
|
3.1
|
40.1
|
1.0
|
CG
|
O:ASP129
|
3.2
|
41.9
|
1.0
|
C
|
O:GLN135
|
3.3
|
40.2
|
1.0
|
OE2
|
O:GLU140
|
3.4
|
41.2
|
1.0
|
CG
|
O:ASP131
|
3.5
|
41.8
|
1.0
|
OD2
|
O:ASP133
|
3.5
|
51.7
|
1.0
|
OD1
|
O:ASP129
|
3.5
|
43.9
|
1.0
|
OD2
|
O:ASP131
|
3.7
|
39.3
|
1.0
|
N
|
O:GLN135
|
4.1
|
43.6
|
1.0
|
N
|
O:ASP133
|
4.1
|
47.0
|
1.0
|
CA
|
O:GLN135
|
4.2
|
41.3
|
1.0
|
CB
|
O:ASP133
|
4.2
|
48.5
|
1.0
|
N
|
O:VAL136
|
4.3
|
37.7
|
1.0
|
CB
|
O:ASP129
|
4.3
|
42.6
|
1.0
|
CA
|
O:VAL136
|
4.4
|
35.8
|
1.0
|
CG
|
O:GLU140
|
4.4
|
38.3
|
1.0
|
ND2
|
O:ASN137
|
4.5
|
39.2
|
1.0
|
CA
|
O:ASP133
|
4.5
|
46.8
|
1.0
|
CG
|
O:GLN135
|
4.6
|
37.4
|
1.0
|
C
|
O:ASP133
|
4.6
|
46.3
|
1.0
|
N
|
O:ASN137
|
4.6
|
38.1
|
1.0
|
CA
|
O:ASP129
|
4.7
|
43.8
|
1.0
|
N
|
O:ASP131
|
4.7
|
42.4
|
1.0
|
CB
|
O:ASP131
|
4.8
|
42.4
|
1.0
|
N
|
O:GLY132
|
4.8
|
46.7
|
1.0
|
N
|
O:GLY134
|
4.9
|
45.7
|
1.0
|
N
|
O:ILE130
|
4.9
|
43.7
|
1.0
|
CB
|
O:GLN135
|
4.9
|
39.8
|
1.0
|
O
|
O:ASP133
|
4.9
|
46.1
|
1.0
|
C
|
O:VAL136
|
5.0
|
36.5
|
1.0
|
|
Calcium binding site 3 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 3 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca802
b:47.5
occ:1.00
|
OE1
|
O:GLU104
|
2.0
|
39.1
|
1.0
|
OD1
|
O:ASP95
|
2.3
|
48.7
|
1.0
|
OD1
|
O:ASN97
|
2.3
|
52.1
|
1.0
|
ND2
|
O:ASN97
|
2.4
|
51.9
|
1.0
|
O
|
O:TYR99
|
2.4
|
38.3
|
1.0
|
CG
|
O:ASN97
|
2.6
|
49.1
|
1.0
|
CD
|
O:GLU104
|
3.0
|
39.9
|
1.0
|
CG
|
O:ASP95
|
3.0
|
49.4
|
1.0
|
OD1
|
O:ASP93
|
3.1
|
39.9
|
1.0
|
OD2
|
O:ASP95
|
3.1
|
51.5
|
1.0
|
OE2
|
O:GLU104
|
3.4
|
38.2
|
1.0
|
C
|
O:TYR99
|
3.4
|
36.5
|
1.0
|
OG
|
O:SER101
|
4.1
|
37.9
|
1.0
|
CB
|
O:ASN97
|
4.1
|
46.3
|
1.0
|
N
|
O:SER101
|
4.1
|
37.5
|
1.0
|
CG
|
O:ASP93
|
4.1
|
41.5
|
1.0
|
N
|
O:ILE100
|
4.2
|
36.1
|
1.0
|
CA
|
O:ILE100
|
4.3
|
35.1
|
1.0
|
CA
|
O:TYR99
|
4.3
|
35.1
|
1.0
|
N
|
O:TYR99
|
4.3
|
35.8
|
1.0
|
CG
|
O:GLU104
|
4.4
|
40.8
|
1.0
|
CB
|
O:ASP95
|
4.5
|
49.6
|
1.0
|
N
|
O:ASN97
|
4.5
|
48.0
|
1.0
|
N
|
O:ASP95
|
4.6
|
47.7
|
1.0
|
CB
|
O:TYR99
|
4.6
|
32.0
|
1.0
|
CA
|
O:ASP93
|
4.6
|
39.1
|
1.0
|
CB
|
O:SER101
|
4.6
|
39.8
|
1.0
|
C
|
O:ILE100
|
4.7
|
36.4
|
1.0
|
C
|
O:ASP93
|
4.8
|
40.8
|
1.0
|
CB
|
O:ASP93
|
4.8
|
39.9
|
1.0
|
CA
|
O:ASN97
|
4.9
|
45.8
|
1.0
|
N
|
O:GLY96
|
4.9
|
49.9
|
1.0
|
CA
|
O:ASP95
|
5.0
|
48.8
|
1.0
|
N
|
O:LYS94
|
5.0
|
42.5
|
1.0
|
OD2
|
O:ASP93
|
5.0
|
43.3
|
1.0
|
|
Calcium binding site 4 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 4 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca703
b:76.5
occ:1.00
|
O
|
P:THR26
|
2.1
|
67.3
|
1.0
|
OD1
|
P:ASP24
|
2.3
|
69.3
|
1.0
|
OD1
|
P:ASP22
|
2.4
|
77.2
|
1.0
|
OD2
|
P:ASP20
|
2.6
|
54.3
|
1.0
|
OD2
|
P:ASP22
|
2.6
|
78.1
|
1.0
|
CG
|
P:ASP22
|
2.8
|
75.8
|
1.0
|
CG
|
P:ASP24
|
3.0
|
67.5
|
1.0
|
OD2
|
P:ASP24
|
3.1
|
65.3
|
1.0
|
C
|
P:THR26
|
3.3
|
67.6
|
1.0
|
CG
|
P:ASP20
|
3.7
|
57.4
|
1.0
|
OG1
|
P:THR26
|
3.7
|
71.3
|
1.0
|
N
|
P:THR26
|
4.0
|
67.0
|
1.0
|
OD1
|
P:ASP20
|
4.1
|
57.3
|
1.0
|
CA
|
P:THR26
|
4.2
|
68.1
|
1.0
|
CB
|
P:ASP22
|
4.2
|
72.6
|
1.0
|
N
|
P:ILE27
|
4.3
|
66.8
|
1.0
|
CA
|
P:ILE27
|
4.4
|
65.4
|
1.0
|
CB
|
P:ASP24
|
4.4
|
66.4
|
1.0
|
OE2
|
P:GLU31
|
4.4
|
73.1
|
1.0
|
N
|
P:ASP24
|
4.5
|
64.9
|
1.0
|
CB
|
P:THR26
|
4.6
|
68.6
|
1.0
|
N
|
P:GLY25
|
4.7
|
67.9
|
1.0
|
N
|
P:ASP22
|
4.7
|
70.0
|
1.0
|
CA
|
P:ASP22
|
4.8
|
69.8
|
1.0
|
C
|
P:ASP22
|
4.8
|
68.6
|
1.0
|
CB
|
P:ASP20
|
4.9
|
58.4
|
1.0
|
O
|
P:ASP22
|
4.9
|
69.0
|
1.0
|
CA
|
P:ASP24
|
4.9
|
66.1
|
1.0
|
CA
|
P:ASP20
|
5.0
|
58.0
|
1.0
|
|
Calcium binding site 5 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 5 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca803
b:30.3
occ:1.00
|
OD1
|
P:ASP133
|
2.0
|
50.6
|
1.0
|
OE1
|
P:GLU140
|
2.0
|
41.0
|
1.0
|
O
|
P:GLN135
|
2.1
|
40.3
|
1.0
|
OD2
|
P:ASP129
|
2.3
|
37.2
|
1.0
|
OD1
|
P:ASP131
|
2.6
|
41.8
|
1.0
|
CG
|
P:ASP133
|
3.0
|
49.9
|
1.0
|
CD
|
P:GLU140
|
3.1
|
40.6
|
1.0
|
CG
|
P:ASP129
|
3.1
|
41.1
|
1.0
|
C
|
P:GLN135
|
3.3
|
39.3
|
1.0
|
OD2
|
P:ASP133
|
3.5
|
51.8
|
1.0
|
OE2
|
P:GLU140
|
3.5
|
40.5
|
1.0
|
CG
|
P:ASP131
|
3.5
|
42.0
|
1.0
|
OD1
|
P:ASP129
|
3.5
|
43.7
|
1.0
|
OD2
|
P:ASP131
|
3.8
|
38.6
|
1.0
|
N
|
P:GLN135
|
4.0
|
43.2
|
1.0
|
N
|
P:ASP133
|
4.1
|
47.0
|
1.0
|
CA
|
P:GLN135
|
4.2
|
40.7
|
1.0
|
N
|
P:VAL136
|
4.2
|
36.9
|
1.0
|
CB
|
P:ASP133
|
4.2
|
48.3
|
1.0
|
CA
|
P:VAL136
|
4.3
|
35.9
|
1.0
|
CB
|
P:ASP129
|
4.3
|
42.3
|
1.0
|
CG
|
P:GLU140
|
4.4
|
39.1
|
1.0
|
CA
|
P:ASP133
|
4.5
|
46.8
|
1.0
|
CG
|
P:GLN135
|
4.5
|
37.4
|
1.0
|
ND2
|
P:ASN137
|
4.5
|
40.2
|
1.0
|
C
|
P:ASP133
|
4.6
|
46.2
|
1.0
|
N
|
P:ASN137
|
4.6
|
38.6
|
1.0
|
CA
|
P:ASP129
|
4.7
|
43.7
|
1.0
|
N
|
P:ASP131
|
4.7
|
41.9
|
1.0
|
N
|
P:GLY132
|
4.9
|
46.4
|
1.0
|
CB
|
P:ASP131
|
4.9
|
42.1
|
1.0
|
N
|
P:GLY134
|
4.9
|
45.3
|
1.0
|
CB
|
P:GLN135
|
4.9
|
39.5
|
1.0
|
O
|
P:ASP133
|
4.9
|
46.2
|
1.0
|
N
|
P:ILE130
|
4.9
|
43.5
|
1.0
|
C
|
P:VAL136
|
4.9
|
37.1
|
1.0
|
|
Calcium binding site 6 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 6 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca804
b:47.4
occ:1.00
|
OE1
|
P:GLU104
|
2.0
|
37.5
|
1.0
|
OD1
|
P:ASP95
|
2.2
|
49.5
|
1.0
|
ND2
|
P:ASN97
|
2.3
|
51.7
|
1.0
|
OD1
|
P:ASN97
|
2.3
|
51.7
|
1.0
|
O
|
P:TYR99
|
2.4
|
39.2
|
1.0
|
CG
|
P:ASN97
|
2.6
|
49.0
|
1.0
|
OD1
|
P:ASP93
|
3.0
|
38.7
|
1.0
|
CD
|
P:GLU104
|
3.0
|
38.3
|
1.0
|
CG
|
P:ASP95
|
3.0
|
49.6
|
1.0
|
OD2
|
P:ASP95
|
3.1
|
51.4
|
1.0
|
OE2
|
P:GLU104
|
3.3
|
36.6
|
1.0
|
C
|
P:TYR99
|
3.4
|
36.8
|
1.0
|
CG
|
P:ASP93
|
4.0
|
40.0
|
1.0
|
CB
|
P:ASN97
|
4.1
|
46.2
|
1.0
|
OG
|
P:SER101
|
4.1
|
38.3
|
1.0
|
N
|
P:SER101
|
4.2
|
38.2
|
1.0
|
N
|
P:ILE100
|
4.3
|
36.2
|
1.0
|
N
|
P:TYR99
|
4.3
|
36.5
|
1.0
|
CA
|
P:ILE100
|
4.3
|
35.7
|
1.0
|
CA
|
P:TYR99
|
4.3
|
35.6
|
1.0
|
CG
|
P:GLU104
|
4.4
|
39.6
|
1.0
|
CB
|
P:ASP95
|
4.4
|
49.6
|
1.0
|
N
|
P:ASN97
|
4.4
|
48.4
|
1.0
|
CA
|
P:ASP93
|
4.5
|
38.5
|
1.0
|
N
|
P:ASP95
|
4.5
|
47.8
|
1.0
|
CB
|
P:TYR99
|
4.6
|
32.7
|
1.0
|
C
|
P:ASP93
|
4.7
|
40.3
|
1.0
|
CB
|
P:SER101
|
4.7
|
39.6
|
1.0
|
CB
|
P:ASP93
|
4.7
|
39.1
|
1.0
|
C
|
P:ILE100
|
4.8
|
37.2
|
1.0
|
CA
|
P:ASN97
|
4.8
|
45.4
|
1.0
|
N
|
P:GLY96
|
4.8
|
49.4
|
1.0
|
N
|
P:LYS94
|
4.9
|
42.2
|
1.0
|
CA
|
P:ASP95
|
4.9
|
48.7
|
1.0
|
OD2
|
P:ASP93
|
4.9
|
41.1
|
1.0
|
|
Calcium binding site 7 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 7 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Ca705
b:76.3
occ:1.00
|
O
|
Q:THR26
|
2.1
|
67.3
|
1.0
|
OD1
|
Q:ASP24
|
2.3
|
69.7
|
1.0
|
OD1
|
Q:ASP22
|
2.4
|
77.1
|
1.0
|
OD2
|
Q:ASP20
|
2.5
|
54.4
|
1.0
|
OD2
|
Q:ASP22
|
2.6
|
77.5
|
1.0
|
CG
|
Q:ASP22
|
2.8
|
75.6
|
1.0
|
CG
|
Q:ASP24
|
3.0
|
67.9
|
1.0
|
OD2
|
Q:ASP24
|
3.1
|
66.0
|
1.0
|
C
|
Q:THR26
|
3.3
|
67.5
|
1.0
|
CG
|
Q:ASP20
|
3.6
|
56.7
|
1.0
|
OG1
|
Q:THR26
|
3.8
|
70.7
|
1.0
|
N
|
Q:THR26
|
4.0
|
66.9
|
1.0
|
OD1
|
Q:ASP20
|
4.0
|
55.7
|
1.0
|
CB
|
Q:ASP22
|
4.2
|
72.3
|
1.0
|
CA
|
Q:THR26
|
4.2
|
68.2
|
1.0
|
N
|
Q:ILE27
|
4.3
|
66.7
|
1.0
|
CA
|
Q:ILE27
|
4.4
|
65.7
|
1.0
|
OE2
|
Q:GLU31
|
4.4
|
74.2
|
1.0
|
CB
|
Q:ASP24
|
4.4
|
66.8
|
1.0
|
N
|
Q:ASP24
|
4.4
|
66.3
|
1.0
|
N
|
Q:ASP22
|
4.6
|
69.8
|
1.0
|
CB
|
Q:THR26
|
4.6
|
68.6
|
1.0
|
N
|
Q:GLY25
|
4.7
|
67.2
|
1.0
|
CA
|
Q:ASP22
|
4.7
|
69.6
|
1.0
|
C
|
Q:ASP22
|
4.7
|
68.3
|
1.0
|
CB
|
Q:ASP20
|
4.8
|
58.9
|
1.0
|
O
|
Q:ASP22
|
4.9
|
68.2
|
1.0
|
CA
|
Q:ASP20
|
4.9
|
58.6
|
1.0
|
CA
|
Q:ASP24
|
4.9
|
66.5
|
1.0
|
|
Calcium binding site 8 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 8 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Ca805
b:29.1
occ:1.00
|
OD1
|
Q:ASP133
|
2.0
|
51.3
|
1.0
|
OE1
|
Q:GLU140
|
2.0
|
40.2
|
1.0
|
O
|
Q:GLN135
|
2.1
|
39.8
|
1.0
|
OD2
|
Q:ASP129
|
2.3
|
37.2
|
1.0
|
OD1
|
Q:ASP131
|
2.6
|
42.3
|
1.0
|
CG
|
Q:ASP133
|
3.0
|
50.5
|
1.0
|
CD
|
Q:GLU140
|
3.0
|
39.9
|
1.0
|
CG
|
Q:ASP129
|
3.2
|
41.9
|
1.0
|
C
|
Q:GLN135
|
3.3
|
39.0
|
1.0
|
OE2
|
Q:GLU140
|
3.5
|
40.2
|
1.0
|
OD2
|
Q:ASP133
|
3.5
|
52.3
|
1.0
|
CG
|
Q:ASP131
|
3.5
|
42.6
|
1.0
|
OD1
|
Q:ASP129
|
3.6
|
44.9
|
1.0
|
OD2
|
Q:ASP131
|
3.7
|
38.8
|
1.0
|
N
|
Q:GLN135
|
4.1
|
42.8
|
1.0
|
N
|
Q:ASP133
|
4.2
|
46.9
|
1.0
|
CA
|
Q:GLN135
|
4.2
|
40.3
|
1.0
|
N
|
Q:VAL136
|
4.2
|
37.0
|
1.0
|
CB
|
Q:ASP133
|
4.3
|
48.5
|
1.0
|
CA
|
Q:VAL136
|
4.3
|
36.8
|
1.0
|
CG
|
Q:GLU140
|
4.3
|
39.3
|
1.0
|
CB
|
Q:ASP129
|
4.4
|
42.4
|
1.0
|
ND2
|
Q:ASN137
|
4.4
|
40.2
|
1.0
|
CG
|
Q:GLN135
|
4.5
|
38.0
|
1.0
|
N
|
Q:ASN137
|
4.5
|
38.7
|
1.0
|
CA
|
Q:ASP133
|
4.6
|
46.4
|
1.0
|
C
|
Q:ASP133
|
4.6
|
45.8
|
1.0
|
CA
|
Q:ASP129
|
4.7
|
43.5
|
1.0
|
N
|
Q:ASP131
|
4.7
|
42.1
|
1.0
|
CB
|
Q:ASP131
|
4.9
|
42.3
|
1.0
|
N
|
Q:GLY132
|
4.9
|
46.6
|
1.0
|
CB
|
Q:GLN135
|
4.9
|
39.5
|
1.0
|
C
|
Q:VAL136
|
4.9
|
37.2
|
1.0
|
N
|
Q:GLY134
|
4.9
|
44.7
|
1.0
|
O
|
Q:ASP133
|
5.0
|
46.1
|
1.0
|
N
|
Q:ILE130
|
5.0
|
44.0
|
1.0
|
|
Calcium binding site 9 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 9 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Ca806
b:51.8
occ:1.00
|
OE1
|
Q:GLU104
|
2.0
|
39.8
|
1.0
|
OD1
|
Q:ASP95
|
2.2
|
49.7
|
1.0
|
ND2
|
Q:ASN97
|
2.3
|
52.1
|
1.0
|
O
|
Q:TYR99
|
2.3
|
40.1
|
1.0
|
OD1
|
Q:ASN97
|
2.5
|
50.5
|
1.0
|
CG
|
Q:ASN97
|
2.7
|
48.9
|
1.0
|
OD1
|
Q:ASP93
|
2.7
|
38.8
|
1.0
|
CD
|
Q:GLU104
|
3.0
|
39.3
|
1.0
|
CG
|
Q:ASP95
|
3.0
|
49.2
|
1.0
|
OD2
|
Q:ASP95
|
3.2
|
50.9
|
1.0
|
OE2
|
Q:GLU104
|
3.3
|
35.8
|
1.0
|
C
|
Q:TYR99
|
3.4
|
37.5
|
1.0
|
CG
|
Q:ASP93
|
3.8
|
40.5
|
1.0
|
CB
|
Q:ASN97
|
4.2
|
46.8
|
1.0
|
CA
|
Q:ASP93
|
4.2
|
39.7
|
1.0
|
N
|
Q:TYR99
|
4.2
|
36.4
|
1.0
|
N
|
Q:ILE100
|
4.2
|
36.9
|
1.0
|
CA
|
Q:ILE100
|
4.2
|
35.3
|
1.0
|
N
|
Q:SER101
|
4.3
|
37.6
|
1.0
|
CA
|
Q:TYR99
|
4.3
|
35.6
|
1.0
|
OG
|
Q:SER101
|
4.3
|
38.6
|
1.0
|
N
|
Q:ASP95
|
4.3
|
47.7
|
1.0
|
N
|
Q:ASN97
|
4.3
|
48.1
|
1.0
|
CG
|
Q:GLU104
|
4.3
|
40.7
|
1.0
|
CB
|
Q:ASP95
|
4.4
|
48.8
|
1.0
|
C
|
Q:ASP93
|
4.4
|
41.4
|
1.0
|
CB
|
Q:ASP93
|
4.4
|
40.1
|
1.0
|
N
|
Q:LYS94
|
4.6
|
43.4
|
1.0
|
OD2
|
Q:ASP93
|
4.7
|
42.4
|
1.0
|
N
|
Q:GLY96
|
4.7
|
49.5
|
1.0
|
CB
|
Q:TYR99
|
4.7
|
32.4
|
1.0
|
CA
|
Q:ASP95
|
4.8
|
48.3
|
1.0
|
C
|
Q:ILE100
|
4.8
|
37.0
|
1.0
|
CA
|
Q:ASN97
|
4.8
|
45.5
|
1.0
|
CB
|
Q:SER101
|
4.9
|
39.2
|
1.0
|
N
|
Q:GLY98
|
4.9
|
40.1
|
1.0
|
O
|
Q:ASP93
|
5.0
|
42.1
|
1.0
|
|
Calcium binding site 10 out
of 18 in 1xfw
Go back to
Calcium Binding Sites List in 1xfw
Calcium binding site 10 out
of 18 in the Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3'5' Cyclic Amp (Camp) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Ca707
b:69.8
occ:1.00
|
O
|
R:THR26
|
2.2
|
67.9
|
1.0
|
OD1
|
R:ASP24
|
2.3
|
69.7
|
1.0
|
OD1
|
R:ASP22
|
2.3
|
76.2
|
1.0
|
OD2
|
R:ASP22
|
2.5
|
78.0
|
1.0
|
OD2
|
R:ASP20
|
2.6
|
55.3
|
1.0
|
CG
|
R:ASP22
|
2.7
|
75.5
|
1.0
|
CG
|
R:ASP24
|
3.0
|
67.5
|
1.0
|
OD2
|
R:ASP24
|
3.0
|
65.0
|
1.0
|
C
|
R:THR26
|
3.4
|
68.0
|
1.0
|
CG
|
R:ASP20
|
3.6
|
57.6
|
1.0
|
OG1
|
R:THR26
|
3.7
|
71.1
|
1.0
|
N
|
R:THR26
|
4.1
|
67.2
|
1.0
|
OD1
|
R:ASP20
|
4.1
|
57.4
|
1.0
|
CB
|
R:ASP22
|
4.1
|
72.6
|
1.0
|
CA
|
R:THR26
|
4.3
|
68.6
|
1.0
|
N
|
R:ILE27
|
4.4
|
66.8
|
1.0
|
CB
|
R:ASP24
|
4.4
|
66.2
|
1.0
|
N
|
R:ASP24
|
4.4
|
65.3
|
1.0
|
CA
|
R:ILE27
|
4.5
|
65.3
|
1.0
|
OE2
|
R:GLU31
|
4.5
|
72.8
|
1.0
|
N
|
R:ASP22
|
4.6
|
69.7
|
1.0
|
CB
|
R:THR26
|
4.6
|
69.2
|
1.0
|
N
|
R:GLY25
|
4.7
|
67.3
|
1.0
|
CA
|
R:ASP22
|
4.7
|
69.7
|
1.0
|
C
|
R:ASP22
|
4.7
|
68.5
|
1.0
|
O
|
R:ASP22
|
4.8
|
68.5
|
1.0
|
CA
|
R:ASP24
|
4.9
|
65.7
|
1.0
|
CB
|
R:ASP20
|
4.9
|
58.8
|
1.0
|
CA
|
R:ASP20
|
5.0
|
58.2
|
1.0
|
|
Reference:
Y.Shen,
N.L.Zhukovskaya,
Q.Guo,
J.Florian,
W.J.Tang.
Calcium-Independent Calmodulin Binding and Two-Metal-Ion Catalytic Mechanism of Anthrax Edema Factor. Embo J. V. 24 929 2005.
ISSN: ISSN 0261-4189
PubMed: 15719022
DOI: 10.1038/SJ.EMBOJ.7600574
Page generated: Fri Jul 12 07:30:02 2024
|