Calcium in PDB 1yiq: Molecular Cloning and Structural Analysis of Quinohemoprotein Alcohol Dehydrogenase Adhiig From Pseudomonas Putida HK5. Compariison to the Other Quinohemoprotein Alcohol Dehydrogenase Adhiib Found in the Same Microorganism.

The structure of Molecular Cloning and Structural Analysis of Quinohemoprotein Alcohol Dehydrogenase Adhiig From Pseudomonas Putida HK5. Compariison to the Other Quinohemoprotein Alcohol Dehydrogenase Adhiib Found in the Same Microorganism., PDB code: 1yiq was solved by H.Toyama, Z.W.Chen, M.Fukumoto, O.Adachi, K.Matsushita, F.S.Mathews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.20
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	75.476, 75.476, 237.894, 90.00, 90.00, 120.00
R / Rfree (%)	17.3 / 22.6

The structure of Molecular Cloning and Structural Analysis of Quinohemoprotein Alcohol Dehydrogenase Adhiig From Pseudomonas Putida HK5. Compariison to the Other Quinohemoprotein Alcohol Dehydrogenase Adhiib Found in the Same Microorganism. also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Calcium atom in the Molecular Cloning and Structural Analysis of Quinohemoprotein Alcohol Dehydrogenase Adhiig From Pseudomonas Putida HK5. Compariison to the Other Quinohemoprotein Alcohol Dehydrogenase Adhiib Found in the Same Microorganism. (pdb code 1yiq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Molecular Cloning and Structural Analysis of Quinohemoprotein Alcohol Dehydrogenase Adhiig From Pseudomonas Putida HK5. Compariison to the Other Quinohemoprotein Alcohol Dehydrogenase Adhiib Found in the Same Microorganism., PDB code: 1yiq:

Calcium binding site 1 out of 1 in the Molecular Cloning and Structural Analysis of Quinohemoprotein Alcohol Dehydrogenase Adhiig From Pseudomonas Putida HK5. Compariison to the Other Quinohemoprotein Alcohol Dehydrogenase Adhiib Found in the Same Microorganism.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Molecular Cloning and Structural Analysis of Quinohemoprotein Alcohol Dehydrogenase Adhiig From Pseudomonas Putida HK5. Compariison to the Other Quinohemoprotein Alcohol Dehydrogenase Adhiib Found in the Same Microorganism. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca802 b:68.7 occ:0.50 O5 A:PQQ801 2.4 17.4 1.0 OE1 A:GLU178 2.4 28.9 1.0 OD1 A:ASN255 2.5 18.8 1.0 O7A A:PQQ801 2.6 14.4 1.0 N6 A:PQQ801 2.8 15.2 1.0 OD2 A:ASP300 2.9 19.4 1.0 OE2 A:GLU178 2.9 23.0 1.0 CD A:GLU178 3.0 23.1 1.0 C5 A:PQQ801 3.3 12.5 1.0 CG A:ASN255 3.4 18.8 1.0 O2 A:PGR803 3.5 25.4 1.0 C6A A:PQQ801 3.6 12.8 1.0 C7X A:PQQ801 3.6 12.3 1.0 C7 A:PQQ801 3.7 13.9 1.0 CG A:ASP300 3.7 18.5 1.0 OD1 A:ASP300 3.7 17.4 1.0 ND2 A:ASN255 3.9 21.7 1.0 O A:HOH1108 3.9 20.8 1.0 CG2 A:THR302 4.0 14.1 1.0 NZ A:LYS327 4.4 15.8 1.0 CG A:GLU178 4.4 22.0 1.0 CB A:ASN255 4.6 19.0 1.0 C4 A:PQQ801 4.7 14.0 1.0 CB A:ALA177 4.8 16.3 1.0 O7B A:PQQ801 4.8 15.0 1.0 C2 A:PGR803 4.8 27.3 1.0 NE1 A:TRP237 5.0 13.8 1.0 C9A A:PQQ801 5.0 12.2 1.0 C8 A:PQQ801 5.0 12.6 1.0

H.Toyama, Z.W.Chen, M.Fukumoto, O.Adachi, K.Matsushita, F.S.Mathews. Molecular Cloning and Structural Analysis of Quinohemoprotein Alcohol Dehydrogenase Adh-Iig From Pseudomonas Putida HK5 J.Mol.Biol. V. 352 91 2005.
ISSN: ISSN 0022-2836
PubMed: 16061256
DOI: 10.1016/J.JMB.2005.06.078