Atomistry » Calcium » PDB 1yf4-1yvn » 1yrt
Atomistry »
  Calcium »
    PDB 1yf4-1yvn »
      1yrt »

Calcium in PDB 1yrt: Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin

Enzymatic activity of Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin

All present enzymatic activity of Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin:
4.6.1.1;

Protein crystallography data

The structure of Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin, PDB code: 1yrt was solved by Q.Guo, Y.Shen, Y.S.Lee, C.S.Gibbs, M.Mrksich, W.J.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.362, 79.362, 139.211, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 27

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin (pdb code 1yrt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin, PDB code: 1yrt:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1yrt

Go back to Calcium Binding Sites List in 1yrt
Calcium binding site 1 out of 2 in the Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca800

b:21.4
occ:1.00
 OD2 B:ASP129 2.3 15.8 1.0
OD1 B:ASP133 2.3 17.4 1.0
O B:GLN135 2.3 16.7 1.0
OE1 B:GLU140 2.4 22.4 1.0
O B:HOH809 2.4 23.5 1.0
OD1 B:ASP131 2.5 18.3 1.0
OE2 B:GLU140 2.5 20.9 1.0
CD B:GLU140 2.8 20.3 1.0
CG B:ASP131 3.2 20.2 1.0
CG B:ASP133 3.3 18.9 1.0
CG B:ASP129 3.4 15.6 1.0
C B:GLN135 3.5 18.4 1.0
OD2 B:ASP131 3.5 18.3 1.0
OD2 B:ASP133 3.7 19.6 1.0
N B:ASP133 4.1 16.9 1.0
N B:GLN135 4.2 18.6 1.0
CA B:ASP129 4.2 19.1 1.0
O B:ASP133 4.2 22.1 1.0
OD1 B:ASP129 4.3 13.6 1.0
CB B:ASP129 4.3 15.5 1.0
CG B:GLU140 4.3 19.5 1.0
N B:ASN137 4.3 18.7 1.0
CA B:VAL136 4.4 16.7 1.0
N B:ASP131 4.4 18.4 1.0
N B:VAL136 4.4 17.1 1.0
N B:GLY132 4.4 17.9 1.0
CB B:ASP133 4.4 17.8 1.0
CA B:GLN135 4.5 19.8 1.0
CB B:ASP131 4.5 18.0 1.0
C B:ASP129 4.5 18.5 1.0
C B:ASP133 4.6 20.0 1.0
CG B:GLN135 4.7 25.3 1.0
CA B:ASP133 4.7 18.6 1.0
CA B:ASP131 4.8 18.3 1.0
N B:ILE130 4.8 18.2 1.0
C B:VAL136 4.8 17.9 1.0
C B:ASP131 4.8 18.2 1.0

Calcium binding site 2 out of 2 in 1yrt

Go back to Calcium Binding Sites List in 1yrt
Calcium binding site 2 out of 2 in the Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure Analysis of the Adenylyl Cyclaes Catalytic Domain of Adenylyl Cyclase Toxin of Bordetella Pertussis in Presence of C-Terminal Calmodulin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca801

b:26.9
occ:1.00
 OD2 B:ASP93 2.3 17.7 1.0
O B:TYR99 2.3 21.6 1.0
OD1 B:ASP95 2.3 31.9 1.0
OE1 B:GLU104 2.5 21.3 1.0
OD1 B:ASN97 2.5 32.0 1.0
OE2 B:GLU104 2.5 23.3 1.0
CD B:GLU104 2.9 18.8 1.0
CG B:ASP95 3.2 31.5 1.0
CG B:ASN97 3.3 32.7 1.0
CG B:ASP93 3.4 17.4 1.0
C B:TYR99 3.5 23.2 1.0
ND2 B:ASN97 3.6 33.1 1.0
O B:ASN97 3.8 35.5 1.0
OD2 B:ASP95 3.8 30.6 1.0
O B:ASP95 4.1 31.5 1.0
CA B:ASP93 4.2 20.8 1.0
OD1 B:ASP93 4.2 14.2 1.0
CB B:ASP93 4.2 18.9 1.0
N B:ASN97 4.2 30.7 1.0
CB B:ASP95 4.3 30.2 1.0
N B:TYR99 4.3 25.8 1.0
CG B:GLU104 4.3 17.4 1.0
CA B:TYR99 4.4 25.2 1.0
N B:ILE100 4.4 22.2 1.0
CA B:ILE100 4.4 20.6 1.0
C B:ASP93 4.4 22.3 1.0
N B:ASP95 4.5 27.5 1.0
C B:ASP95 4.5 29.5 1.0
N B:SER101 4.6 20.3 1.0
C B:ASN97 4.6 33.0 1.0
CB B:ASN97 4.6 32.5 1.0
CA B:ASN97 4.8 32.8 1.0
CA B:ASP95 4.8 29.0 1.0
CB B:TYR99 4.8 26.7 1.0
N B:LYS94 4.8 23.8 1.0
O B:ASP93 4.8 21.2 1.0
O B:HOH820 4.9 26.2 1.0
C B:ILE100 5.0 20.8 1.0

Reference:

Q.Guo, Y.Shen, Y.S.Lee, C.S.Gibbs, M.Mrksich, W.J.Tang. Structural Basis For the Interaction of Bordetella Pertussis Adenylyl Cyclase Toxin with Calmodulin. Embo J. V. 24 3190 2005.
ISSN: ISSN 0261-4189
PubMed: 16138079
DOI: 10.1038/SJ.EMBOJ.7600800
Page generated: Fri Jul 12 08:10:34 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy