Calcium in PDB 1yu0: Major Tropism Determinant P1 Variant

The structure of Major Tropism Determinant P1 Variant, PDB code: 1yu0 was solved by S.A.Mcmahon, J.L.Miller, J.A.Lawton, P.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.33 / 1.56
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	92.258, 92.258, 102.231, 90.00, 90.00, 120.00
R / Rfree (%)	12.8 / 14.5

The binding sites of Calcium atom in the Major Tropism Determinant P1 Variant (pdb code 1yu0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Major Tropism Determinant P1 Variant, PDB code: 1yu0:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Major Tropism Determinant P1 Variant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Major Tropism Determinant P1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:7.9 occ:0.33 O A:PHE313 2.3 4.6 1.0 OE2 A:GLU312 2.3 3.5 1.0 CD A:GLU312 3.4 4.7 1.0 C A:PHE313 3.5 5.7 1.0 N A:PHE313 3.9 5.0 1.0 OE1 A:GLU312 4.1 3.9 1.0 CA A:PHE313 4.1 5.3 1.0 CG A:GLU312 4.2 5.8 1.0 CB A:PHE313 4.5 5.7 1.0 N A:GLY314 4.6 5.9 1.0 CA A:CA502 4.7 7.9 0.3 CA A:GLY314 4.9 6.4 1.0 C A:GLU312 4.9 5.4 1.0

Calcium binding site 2 out of 2 in the Major Tropism Determinant P1 Variant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Major Tropism Determinant P1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:7.9 occ:0.33 OE1 A:GLU312 2.3 3.9 1.0 O A:HOH799 2.3 5.0 1.0 CD A:GLU312 3.4 4.7 1.0 OE2 A:GLU312 3.7 3.5 1.0 ND2 A:ASN254 4.0 7.7 1.0 O A:ASN311 4.4 8.9 1.0 O A:HOH602 4.5 13.8 1.0 CG A:GLU312 4.7 5.8 1.0 CA A:CA501 4.7 7.9 0.3 CA A:GLU312 4.9 5.5 1.0 CB A:GLU312 5.0 5.9 1.0

S.A.Mcmahon, J.L.Miller, J.A.Lawton, D.E.Kerkow, A.Hodes, M.A.Marti-Renom, S.Doulatov, E.Narayanan, A.Sali, J.F.Miller, P.Ghosh. The C-Type Lectin Fold As An Evolutionary Solution For Massive Sequence Variation Nat.Struct.Mol.Biol. V. 12 886 2005.
ISSN: ISSN 1545-9993
PubMed: 16170324
DOI: 10.1038/NSMB992