Calcium in PDB 1z1c: Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice

The structure of Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice, PDB code: 1z1c was solved by M.Kontou, L.Govindasamy, H.J.Nam, N.Bryant, A.L.Llamas-Saiz, C.Foces-Foces, E.Hernando, M.P.Rubio, R.Mckenna, J.M.Almendral, M.Agbandje-Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	448.700, 416.700, 305.300, 90.00, 95.80, 90.00
R / Rfree (%)	32.5 / 32.9

The binding sites of Calcium atom in the Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice (pdb code 1z1c). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice, PDB code: 1z1c:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:1.0 occ:1.00 OP2 B:DT11 2.3 54.7 1.0 OP1 B:DC8 2.4 22.2 1.0 OP1 B:DC6 2.7 11.1 1.0 OP2 B:DT9 2.7 17.0 1.0 OP2 B:DC6 3.5 12.0 1.0 P B:DC6 3.6 10.3 1.0 P B:DC8 3.6 22.0 1.0 P B:DT11 3.7 55.2 1.0 OP2 B:DC8 3.8 22.8 1.0 P B:DT9 4.1 18.1 1.0 O3' B:DA10 4.2 55.5 1.0 C3' B:DC8 4.4 18.4 1.0 C2' B:DA10 4.4 54.4 1.0 O5' B:DC8 4.5 22.0 1.0 O5' B:DC6 4.6 15.9 1.0 OP1 B:DT11 4.6 54.1 1.0 C3' B:DA10 4.6 54.5 1.0 O3' B:DC8 4.6 19.1 1.0 O5' B:DT11 4.7 57.3 1.0 O3' B:DT7 4.8 27.5 1.0 O3' B:DC5 4.8 12.1 1.0 OP1 B:DT9 4.9 18.6 1.0 C2' B:DC8 5.0 18.3 1.0 C3' B:DC5 5.0 12.7 1.0

Calcium binding site 2 out of 2 in the Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:29.9 occ:1.00 OP1 B:DC5 2.4 17.6 1.0 OP1 B:DT11 2.5 54.1 1.0 OP1 B:DT4 3.3 77.7 1.0 P B:DC5 3.8 18.6 1.0 P B:DT11 4.0 55.2 1.0 OP2 B:DC5 4.2 18.5 1.0 C3' B:DA10 4.4 54.5 1.0 C5' B:DA10 4.4 49.9 1.0 OP1 B:DT9 4.4 18.6 1.0 O3' B:DA10 4.6 55.5 1.0 P B:DT4 4.7 78.0 1.0 O5' B:DC5 4.7 17.1 1.0 C4' B:DA10 4.7 52.4 1.0 O3' B:DT4 4.7 27.1 1.0 OP2 B:DT11 4.8 54.7 1.0 O5' B:DT11 4.9 57.3 1.0 C5' B:DT11 4.9 59.7 1.0

M.Kontou, L.Govindasamy, H.J.Nam, N.Bryant, A.L.Llamas-Saiz, C.Foces-Foces, E.Hernando, M.P.Rubio, R.Mckenna, J.M.Almendral, M.Agbandje-Mckenna. Structural Determinants of Tissue Tropism and in Vivo Pathogenicity For the Parvovirus Minute Virus of Mice. J.Virol. V. 79 10931 2005.
ISSN: ISSN 0022-538X
PubMed: 16103145
DOI: 10.1128/JVI.79.17.10931-10943.2005