Calcium in PDB 1z6c: Solution Structure of An Egf Pair (EGF34) From Vitamin K- Dependent Protein S

The binding sites of Calcium atom in the Solution Structure of An Egf Pair (EGF34) From Vitamin K- Dependent Protein S (pdb code 1z6c). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of An Egf Pair (EGF34) From Vitamin K- Dependent Protein S, PDB code: 1z6c:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of An Egf Pair (EGF34) From Vitamin K- Dependent Protein S


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of An Egf Pair (EGF34) From Vitamin K- Dependent Protein S within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca246 b:0.0 occ:2.00 H2 A:HOH248 1.5 7.0 0.4 OE1 A:GLU163 2.4 0.0 -0.6 OD1 A:ASN178 2.4 0.0 -0.5 OD1 A:ASP160 2.4 0.0 -0.6 O A:HOH248 2.4 4.0 -0.8 O A:VAL161 2.6 0.0 -0.5 O A:ILE179 2.6 0.0 -0.5 O A:ASP162 2.7 0.0 -0.5 H1 A:HOH248 2.9 7.0 0.4 C A:ILE179 3.1 0.0 0.5 HA A:PRO180 3.3 0.0 0.1 H A:VAL161 3.3 0.0 0.3 CD A:GLU163 3.5 0.0 0.5 HA A:GLU163 3.5 0.0 0.1 CG A:ASP160 3.6 0.0 0.5 CG A:ASN178 3.6 0.0 0.5 N A:PRO180 3.6 0.0 -0.4 C A:VAL161 3.8 0.0 0.5 C A:ASP162 3.8 0.0 0.5 CA A:PRO180 3.8 0.0 1.0 HA A:ILE179 3.8 0.0 0.1 CA A:ILE179 3.8 0.0 1.0 HD11 A:LEU166 3.9 0.0 0.1 N A:ILE179 3.9 0.0 -0.4 OE2 A:GLU163 3.9 0.0 -0.6 HB3 A:ASN178 4.0 0.0 0.1 H A:ILE179 4.0 0.0 0.3 HD13 A:LEU166 4.1 0.0 0.1 OD2 A:ASP160 4.1 0.0 -0.6 N A:VAL161 4.2 0.0 -0.4 C A:PRO180 4.3 0.0 0.5 CB A:ASN178 4.4 0.0 -0.2 C A:ASN178 4.4 0.0 0.5 HB2 A:ASP162 4.4 0.0 0.1 HG11 A:VAL161 4.5 0.0 0.1 CA A:GLU163 4.5 0.0 1.0 CD1 A:LEU166 4.5 0.0 -0.3 H A:ASP160 4.5 0.0 0.3 N A:GLU163 4.6 0.0 -0.4 HD3 A:PRO180 4.6 0.0 0.1 HD22 A:ASN178 4.6 0.0 0.3 ND2 A:ASN178 4.6 0.0 -0.5 O A:PRO180 4.6 0.0 -0.5 CA A:VAL161 4.6 0.0 1.0 N A:ASP162 4.7 0.0 -0.4 CD A:PRO180 4.7 0.0 0.1 CA A:ASP162 4.7 0.0 1.0 O A:ASN178 4.7 0.0 -0.5 HB2 A:ASP160 4.8 0.0 0.1 CB A:ASP160 4.8 0.0 -0.5 CG A:GLU163 4.8 0.0 -0.5 H A:ASP182 4.9 0.0 0.3 N A:GLY181 4.9 0.0 -0.4 HD23 A:LEU166 4.9 0.0 0.1 H A:GLY181 5.0 0.0 0.3

Calcium binding site 2 out of 2 in the Solution Structure of An Egf Pair (EGF34) From Vitamin K- Dependent Protein S


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of An Egf Pair (EGF34) From Vitamin K- Dependent Protein S within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca247 b:0.0 occ:2.00 OD1 A:ASN217 2.3 0.0 -0.5 H2 A:HOH249 2.3 7.0 0.4 H A:GLY220 2.4 0.0 0.3 OD2 A:ASP202 2.4 0.0 -0.6 O A:HOH249 2.4 4.0 -0.8 OE1 A:GLU205 2.4 0.0 -0.6 O A:ILE203 2.7 0.0 -0.5 HB2 A:ASP202 2.7 0.0 0.1 O A:TYR218 2.7 0.0 -0.5 H1 A:HOH249 2.9 7.0 0.4 N A:GLY220 3.2 0.0 -0.4 CG A:ASN217 3.3 0.0 0.5 CG A:ASP202 3.3 0.0 0.5 CD A:GLU205 3.4 0.0 0.5 CB A:ASP202 3.5 0.0 -0.5 HG23 A:ILE203 3.5 0.0 0.1 H A:ILE203 3.5 0.0 0.3 HA A:PRO219 3.5 0.0 0.1 C A:TYR218 3.6 0.0 0.5 N A:ILE203 3.7 0.0 -0.4 C A:ILE203 3.7 0.0 0.5 OE2 A:GLU205 3.8 0.0 -0.6 HD22 A:ASN217 3.8 0.0 0.3 ND2 A:ASN217 4.0 0.0 -0.5 CA A:GLY220 4.0 0.0 -0.1 O A:GLY220 4.0 0.0 -0.5 C A:GLY220 4.0 0.0 0.5 CA A:PRO219 4.1 0.0 1.0 HA2 A:GLY220 4.1 0.0 0.1 C A:ASP202 4.1 0.0 0.5 C A:PRO219 4.1 0.0 0.5 HG21 A:ILE203 4.2 0.0 0.1 O A:ASN217 4.2 0.0 -0.5 HB3 A:ASN217 4.2 0.0 0.1 N A:PRO219 4.2 0.0 -0.4 C A:ASN217 4.2 0.0 0.5 H A:GLU205 4.2 0.0 0.3 HB3 A:ASP202 4.3 0.0 0.1 CG2 A:ILE203 4.3 0.0 -0.3 CA A:ILE203 4.3 0.0 1.0 CB A:ASN217 4.3 0.0 -0.2 CA A:ASP202 4.3 0.0 1.0 HB3 A:TYR222 4.4 0.0 0.1 N A:TYR218 4.4 0.0 -0.4 OD1 A:ASP202 4.5 0.0 -0.6 HA A:ASP202 4.5 0.0 0.1 HA A:ASP204 4.6 0.0 0.1 CA A:TYR218 4.6 0.0 1.0 N A:GLY221 4.7 0.0 -0.4 HA A:TYR222 4.7 0.0 0.1 CG A:GLU205 4.8 0.0 -0.5 CA A:ASN217 4.8 0.0 1.0 HG3 A:GLU205 4.8 0.0 0.1 H A:TYR222 4.8 0.0 0.3 O A:ASP202 4.9 0.0 -0.5 HD21 A:ASN217 4.9 0.0 0.3 H A:TYR218 4.9 0.0 0.3 N A:TYR222 4.9 0.0 -0.4 N A:ASP204 4.9 0.0 -0.4 HA A:ASN217 4.9 0.0 0.1 HA A:TYR218 4.9 0.0 0.1 CB A:ILE203 5.0 0.0 -0.1

T.Drakenberg, H.Ghasriani, E.Thulin, A.Muranyi, A.Annila, J.Stenflo. Solution Structure of the Ca(2+)-Binding EGF3-4 Pair From Vitamin K-Dependent Protein S: Identification of An Unusual Fold in EGF3. Biochemistry V. 44 8782 2005.
ISSN: ISSN 0006-2960
PubMed: 15952784
DOI: 10.1021/BI050101F