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Calcium in PDB 1zqv: Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soaked in the Presence of CACL2 (150 Millimolar)

Enzymatic activity of Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soaked in the Presence of CACL2 (150 Millimolar)

All present enzymatic activity of Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soaked in the Presence of CACL2 (150 Millimolar):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soaked in the Presence of CACL2 (150 Millimolar), PDB code: 1zqv was solved by H.Pelletier, M.R.Sawaya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 120.765, 63.349, 35.750, 90.00, 90.00, 90.00
R / Rfree (%) 24.4 / n/a

Calcium Binding Sites:

The binding sites of Calcium atom in the Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soaked in the Presence of CACL2 (150 Millimolar) (pdb code 1zqv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soaked in the Presence of CACL2 (150 Millimolar), PDB code: 1zqv:

Calcium binding site 1 out of 1 in 1zqv

Go back to Calcium Binding Sites List in 1zqv
Calcium binding site 1 out of 1 in the Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soaked in the Presence of CACL2 (150 Millimolar)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soaked in the Presence of CACL2 (150 Millimolar) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca340

b:67.8
occ:1.00
OD2 A:ASP190 2.4 28.1 1.0
OD1 A:ASP190 2.9 23.8 1.0
CG A:ASP190 2.9 25.0 1.0
CB A:ASP190 4.3 23.5 1.0
CB A:ASP192 4.4 22.6 1.0
O A:HOH409 4.6 35.6 1.0

Reference:

H.Pelletier, M.R.Sawaya. Characterization of the Metal Ion Binding Helix-Hairpin-Helix Motifs in Human Dna Polymerase Beta By X-Ray Structural Analysis. Biochemistry V. 35 12778 1996.
ISSN: ISSN 0006-2960
PubMed: 8841120
DOI: 10.1021/BI960790I
Page generated: Sat Dec 12 03:30:21 2020

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