Calcium in PDB 1zvj: Structure of Kumamolisin-As Mutant, D164N

The structure of Structure of Kumamolisin-As Mutant, D164N, PDB code: 1zvj was solved by M.Li, A.Wlodawer, A.Gustchina, T.Nakayama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.03
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	41.850, 44.660, 49.070, 114.90, 105.90, 102.10
R / Rfree (%)	18.8 / 26.3

The binding sites of Calcium atom in the Structure of Kumamolisin-As Mutant, D164N (pdb code 1zvj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Kumamolisin-As Mutant, D164N, PDB code: 1zvj:

Calcium binding site 1 out of 1 in the Structure of Kumamolisin-As Mutant, D164N


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Kumamolisin-As Mutant, D164N within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:27.1 occ:1.00 O A:GLY334 2.3 30.8 1.0 OD1 A:ASP316 2.3 28.9 1.0 O A:ILE317 2.3 23.7 1.0 O A:GLY336 2.3 24.9 1.0 OD2 A:ASP338 2.3 24.8 1.0 O A:HOH501 2.5 26.5 1.0 CG A:ASP316 3.4 33.0 1.0 CG A:ASP338 3.5 32.6 1.0 C A:ILE317 3.5 24.6 1.0 C A:GLY336 3.5 18.0 1.0 C A:GLY334 3.5 33.4 1.0 N A:GLY336 3.8 19.5 1.0 OD2 A:ASP316 3.9 34.0 1.0 N A:ILE317 3.9 26.8 1.0 N A:GLY334 4.0 26.2 1.0 OG1 A:THR341 4.0 22.2 1.0 C A:PRO335 4.1 31.4 1.0 O A:GLY342 4.2 23.6 1.0 CA A:GLY336 4.2 14.4 1.0 CB A:ASP338 4.2 27.5 1.0 CA A:ILE317 4.3 25.1 1.0 OD1 A:ASP338 4.4 20.2 1.0 CA A:GLY334 4.4 19.8 1.0 CA A:THR318 4.4 25.7 1.0 N A:THR318 4.5 22.0 1.0 N A:PRO335 4.5 40.5 1.0 N A:ASP338 4.5 20.2 1.0 CA A:PRO335 4.5 37.4 1.0 C A:TRP337 4.5 25.2 1.0 N A:TRP337 4.6 16.8 1.0 C A:ASP316 4.6 29.1 1.0 CB A:ASP316 4.7 27.1 1.0 CG2 A:THR318 4.7 28.2 1.0 O A:PRO335 4.7 22.3 1.0 CA A:ASP316 4.7 26.1 1.0 CB A:ILE317 4.8 27.1 1.0 CA A:TRP337 4.8 17.0 1.0 O A:TRP337 4.9 23.7 1.0

A.Okubo, M.Li, M.Ashida, H.Oyama, A.Gustchina, K.Oda, B.M.Dunn, A.Wlodawer, T.Nakayama. Processing, Catalytic Activity and Crystal Structures of Kumamolisin-As with An Engineered Active Site. Febs J. V. 273 2563 2006.
ISSN: ISSN 1742-464X
PubMed: 16704427
DOI: 10.1111/J.1742-4658.2006.05266.X