Atomistry » Calcium » PDB 2bir-2bw1 » 2bv2
Atomistry »
  Calcium »
    PDB 2bir-2bw1 »
      2bv2 »

Calcium in PDB 2bv2: Beta Gamma Crystallin From Ciona Intestinalis

Protein crystallography data

The structure of Beta Gamma Crystallin From Ciona Intestinalis, PDB code: 2bv2 was solved by S.M.Shimeld, A.G.Purkiss, R.P.H.Dirks, O.A.Bateman, C.Slingsby, N.H.Lubsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.01 / 1.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 98.037, 29.788, 57.278, 90.00, 121.48, 90.00
R / Rfree (%) 16.9 / 24.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Beta Gamma Crystallin From Ciona Intestinalis (pdb code 2bv2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Beta Gamma Crystallin From Ciona Intestinalis, PDB code: 2bv2:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 2bv2

Go back to Calcium Binding Sites List in 2bv2
Calcium binding site 1 out of 4 in the Beta Gamma Crystallin From Ciona Intestinalis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Beta Gamma Crystallin From Ciona Intestinalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:9.6
occ:1.00
O A:GLU7 2.3 9.8 1.0
O A:HOH230 2.3 12.8 1.0
OG A:SER35 2.4 11.4 1.0
O A:ILE33 2.4 8.7 1.0
OD1 A:ASP75 2.5 10.4 1.0
C A:ILE33 3.5 7.9 1.0
CB A:SER35 3.5 10.3 1.0
CG A:ASP75 3.5 15.3 1.0
C A:GLU7 3.5 8.0 1.0
OD2 A:ASP75 3.9 14.0 1.0
CA A:ILE33 4.1 10.6 1.0
OD1 A:ASP74 4.2 16.6 1.0
N A:SER35 4.2 9.9 1.0
C A:VAL34 4.3 10.7 1.0
CA A:GLU7 4.4 8.0 1.0
OD2 A:ASP74 4.4 22.5 1.0
CA A:SER35 4.4 9.1 1.0
O A:HOH243 4.4 14.1 1.0
CG A:GLU7 4.5 14.2 1.0
N A:VAL34 4.5 8.6 1.0
N A:ASP8 4.5 12.1 1.0
CB A:ILE33 4.5 11.2 1.0
OD1 A:ASP8 4.6 12.6 1.0
CA A:ASP8 4.6 9.6 1.0
O A:VAL34 4.6 11.8 1.0
CG A:ASP74 4.7 16.7 1.0
CA A:VAL34 4.7 9.4 1.0
CB A:ASP75 4.8 13.0 1.0

Calcium binding site 2 out of 4 in 2bv2

Go back to Calcium Binding Sites List in 2bv2
Calcium binding site 2 out of 4 in the Beta Gamma Crystallin From Ciona Intestinalis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Beta Gamma Crystallin From Ciona Intestinalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca102

b:20.3
occ:1.00
OG A:SER78 2.3 11.2 1.0
O A:ASP48 2.3 11.8 1.0
O A:GLU76 2.4 10.9 1.0
OD1 A:ASP32 2.5 12.7 1.0
OE1 A:GLU76 2.5 25.0 1.0
C A:GLU76 3.3 11.6 1.0
C A:ASP48 3.4 9.2 1.0
CD A:GLU76 3.4 28.8 1.0
CG A:ASP32 3.4 13.9 1.0
CB A:SER78 3.5 12.2 1.0
OD2 A:ASP32 3.7 17.6 1.0
CG A:GLU76 3.8 24.2 1.0
CA A:GLU76 3.9 12.8 1.0
CA A:ASP48 4.1 9.6 1.0
N A:SER78 4.1 11.8 1.0
O A:HOH245 4.1 26.3 1.0
C A:LEU77 4.1 10.1 1.0
O A:LEU77 4.3 14.7 1.0
CA A:SER78 4.3 11.9 1.0
N A:LEU77 4.4 10.7 1.0
OE2 A:GLU76 4.4 32.2 1.0
CB A:GLU76 4.4 14.7 1.0
N A:ASP49 4.4 10.2 1.0
OD1 A:ASN31 4.5 15.5 1.0
CB A:ASP48 4.5 13.4 1.0
CA A:LEU77 4.6 12.7 1.0
CA A:ASP49 4.7 9.7 1.0
CB A:ASP32 4.8 11.8 1.0

Calcium binding site 3 out of 4 in 2bv2

Go back to Calcium Binding Sites List in 2bv2
Calcium binding site 3 out of 4 in the Beta Gamma Crystallin From Ciona Intestinalis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Beta Gamma Crystallin From Ciona Intestinalis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca101

b:8.2
occ:1.00
OD2 B:ASP75 2.3 11.9 1.0
O B:GLU7 2.3 10.5 1.0
OG B:SER35 2.3 9.8 1.0
O B:ILE33 2.4 9.7 1.0
O B:HOH220 2.5 14.2 1.0
CG B:ASP75 3.4 11.2 1.0
C B:ILE33 3.4 8.1 1.0
CB B:SER35 3.5 10.3 1.0
C B:GLU7 3.5 5.6 1.0
OD1 B:ASP75 3.8 12.3 1.0
CA B:ILE33 4.1 10.1 1.0
N B:SER35 4.1 8.4 1.0
OD1 B:ASP74 4.1 16.4 1.0
C B:VAL34 4.3 7.8 1.0
CA B:GLU7 4.3 6.2 1.0
CA B:SER35 4.4 9.5 1.0
N B:VAL34 4.4 8.0 1.0
CG B:GLU7 4.5 11.1 1.0
CB B:ILE33 4.5 10.1 1.0
OD2 B:ASP74 4.5 16.5 1.0
N B:ASP8 4.5 7.7 1.0
O B:VAL34 4.6 9.6 1.0
CA B:ASP8 4.7 9.4 1.0
OD1 B:ASP8 4.7 11.1 1.0
CB B:ASP75 4.7 9.5 1.0
CA B:VAL34 4.7 6.6 1.0
CG B:ASP74 4.7 14.9 1.0
CA B:ASP75 5.0 9.3 1.0
CB B:GLU7 5.0 9.4 1.0

Calcium binding site 4 out of 4 in 2bv2

Go back to Calcium Binding Sites List in 2bv2
Calcium binding site 4 out of 4 in the Beta Gamma Crystallin From Ciona Intestinalis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Beta Gamma Crystallin From Ciona Intestinalis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca102

b:19.1
occ:1.00
O B:GLU76 2.3 10.0 1.0
O B:HOH235 2.3 21.4 1.0
O B:ASP48 2.3 11.2 1.0
OG B:SER78 2.3 12.5 1.0
OD1 B:ASP32 2.4 11.4 1.0
OE2 B:GLU76 2.8 24.9 1.0
C B:GLU76 3.3 7.7 1.0
C B:ASP48 3.4 9.8 1.0
CG B:ASP32 3.5 12.1 1.0
CB B:SER78 3.6 10.9 1.0
OD2 B:ASP32 3.8 12.1 1.0
CA B:GLU76 3.8 12.3 1.0
CD B:GLU76 3.9 29.2 1.0
CA B:ASP48 4.1 10.8 1.0
N B:SER78 4.2 11.8 1.0
C B:LEU77 4.2 11.7 1.0
CB B:GLU76 4.3 18.0 1.0
N B:ASP49 4.3 12.7 1.0
O B:LEU77 4.3 11.2 1.0
N B:LEU77 4.4 6.2 1.0
CA B:SER78 4.4 9.2 1.0
OD2 B:ASP49 4.5 29.3 1.0
CA B:ASP49 4.5 11.9 1.0
OD1 B:ASN31 4.5 13.9 1.0
OE1 B:GLU76 4.6 35.4 1.0
CB B:ASP48 4.6 10.5 1.0
CG B:GLU76 4.7 24.1 1.0
CA B:LEU77 4.7 10.1 1.0
CB B:ASP32 4.8 8.4 1.0

Reference:

S.M.Shimeld, A.G.Purkiss, R.P.H.Dirks, O.A.Bateman, C.Slingsby, N.H.Lubsen. Urochordate Betagamma-Crystallin and the Evolutionary Origin of the Vertebrate Eye Lens. Curr.Biol. V. 15 1684 2005.
ISSN: ISSN 0960-9822
PubMed: 16169492
DOI: 10.1016/J.CUB.2005.08.046
Page generated: Sat Dec 12 03:32:55 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy