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Calcium in PDB 2by5: Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection

Enzymatic activity of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection

All present enzymatic activity of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection:
3.4.21.4;

Protein crystallography data

The structure of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection, PDB code: 2by5 was solved by H.-K.S.Leiros, J.Timmins, R.B.G.Ravelli, S.M.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.80 / 1.3
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.259, 58.337, 66.745, 90.00, 90.00, 90.00
R / Rfree (%) 10.3 / 13.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection (pdb code 2by5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection, PDB code: 2by5:

Calcium binding site 1 out of 1 in 2by5

Go back to Calcium Binding Sites List in 2by5
Calcium binding site 1 out of 1 in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Ca4226

b:4.9
occ:1.00
 OE1 X:GLU70 2.3 5.9 1.0
O X:VAL75 2.3 5.8 1.0
OE2 X:GLU80 2.3 5.7 1.0
O X:ASN72 2.3 5.5 1.0
O X:HOH2124 2.3 6.0 1.0
O X:HOH2147 2.4 5.9 1.0
CD X:GLU70 3.4 4.8 1.0
C X:VAL75 3.4 4.9 1.0
CD X:GLU80 3.4 6.1 1.0
C X:ASN72 3.5 5.1 1.0
CG X:GLU80 3.8 7.2 1.0
OE2 X:GLU70 3.8 5.3 1.0
CA X:VAL76 4.1 6.6 1.0
N X:GLU77 4.2 7.0 1.0
N X:VAL76 4.2 6.3 1.0
N X:VAL75 4.2 5.3 1.0
CA X:ILE73 4.3 5.3 1.0
OE1 X:GLU77 4.3 7.0 1.0
N X:ILE73 4.3 5.1 1.0
N X:ASN72 4.4 4.8 1.0
CA X:VAL75 4.4 5.2 1.0
CA X:ASN72 4.5 5.5 1.0
CG X:GLU77 4.5 7.4 1.0
O X:HOH2123 4.5 6.5 1.0
OE1 X:GLU80 4.5 6.8 1.0
C X:ILE73 4.5 4.7 1.0
N X:ASP71 4.6 5.0 1.0
C X:VAL76 4.6 7.8 1.0
CG X:GLU70 4.6 5.2 1.0
CA X:GLU70 4.7 4.6 1.0
CB X:GLU77 4.8 7.3 1.0
CD X:GLU77 4.8 8.7 1.0
O X:HOH2060 4.8 16.2 1.0
CB X:ASN72 4.8 4.9 1.0
CB X:GLU70 4.8 4.7 1.0
N X:ASN74 4.8 4.8 1.0
O X:ILE73 4.9 5.3 1.0
C X:ASP71 4.9 4.7 1.0

Reference:

H.-K.S.Leiros, J.Timmins, R.B.G.Ravelli, S.M.Mcsweeney. Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection? Acta Crystallogr.,Sect.D V. 62 125 2006.
ISSN: ISSN 0907-4449
PubMed: 16421442
DOI: 10.1107/S0907444905033627
Page generated: Sat Dec 12 03:33:04 2020

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