Atomistry » Calcium » PDB 2bw7-2c4x » 2bya
Atomistry »
  Calcium »
    PDB 2bw7-2c4x »
      2bya »

Calcium in PDB 2bya: Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection

Enzymatic activity of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection

All present enzymatic activity of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection:
3.4.21.4;

Protein crystallography data

The structure of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection, PDB code: 2bya was solved by H.-K.S.Leiros, J.Timmins, R.B.G.Ravelli, S.M.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.87 / 1.3
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.274, 58.359, 66.782, 90.00, 90.00, 90.00
R / Rfree (%) 10.8 / 14.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection (pdb code 2bya). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection, PDB code: 2bya:

Calcium binding site 1 out of 1 in 2bya

Go back to Calcium Binding Sites List in 2bya
Calcium binding site 1 out of 1 in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Ca1250

b:5.6
occ:1.00
 OE1 X:GLU70 2.3 7.0 1.0
O X:VAL75 2.3 6.4 1.0
OE2 X:GLU80 2.3 6.5 1.0
O X:ASN72 2.3 6.4 1.0
O X:HOH2128 2.4 6.8 1.0
O X:HOH2149 2.4 7.3 1.0
CD X:GLU70 3.4 6.5 1.0
CD X:GLU80 3.4 7.0 1.0
C X:VAL75 3.4 5.6 1.0
C X:ASN72 3.5 6.0 1.0
OE2 X:GLU70 3.8 6.5 1.0
CG X:GLU80 3.8 8.9 1.0
CA X:VAL76 4.1 7.0 1.0
N X:GLU77 4.2 7.4 1.0
N X:VAL76 4.2 7.0 1.0
N X:VAL75 4.2 5.7 1.0
OE1 X:GLU77 4.3 9.6 1.0
CA X:ILE73 4.3 6.0 1.0
N X:ILE73 4.3 5.6 1.0
N X:ASN72 4.4 5.6 1.0
CA X:VAL75 4.4 5.7 1.0
CA X:ASN72 4.5 6.0 1.0
O X:HOH2126 4.5 7.7 1.0
CG X:GLU77 4.5 9.7 1.0
OE1 X:GLU80 4.5 7.9 1.0
C X:ILE73 4.5 5.7 1.0
N X:ASP71 4.6 6.0 1.0
C X:VAL76 4.6 8.4 1.0
CG X:GLU70 4.6 6.0 1.0
CA X:GLU70 4.7 5.0 1.0
CD X:GLU77 4.8 10.2 1.0
CB X:GLU77 4.8 8.2 1.0
CB X:ASN72 4.8 5.4 1.0
O X:HOH2061 4.8 19.2 1.0
CB X:GLU70 4.9 5.3 1.0
N X:ASN74 4.9 5.7 1.0
O X:ILE73 4.9 6.2 1.0
C X:ASP71 5.0 5.8 1.0

Reference:

H.-K.S.Leiros, J.Timmins, R.B.G.Ravelli, S.M.Mcsweeney. Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection? Acta Crystallogr.,Sect.D V. 62 125 2006.
ISSN: ISSN 0907-4449
PubMed: 16421442
DOI: 10.1107/S0907444905033627
Page generated: Fri Jul 12 09:15:21 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy