Calcium in PDB 2c04: Gmppcp Complex of Srp Gtpase Ffh Ng Domain at Ultra-High Resolution

The structure of Gmppcp Complex of Srp Gtpase Ffh Ng Domain at Ultra-High Resolution, PDB code: 2c04 was solved by U.D.Ramirez, A.M.Preininger, D.M.Freymann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.61 / 1.15
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	109.006, 54.440, 98.831, 90.00, 97.16, 90.00
R / Rfree (%)	14.3 / 18

The binding sites of Calcium atom in the Gmppcp Complex of Srp Gtpase Ffh Ng Domain at Ultra-High Resolution (pdb code 2c04). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Gmppcp Complex of Srp Gtpase Ffh Ng Domain at Ultra-High Resolution, PDB code: 2c04:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Gmppcp Complex of Srp Gtpase Ffh Ng Domain at Ultra-High Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Gmppcp Complex of Srp Gtpase Ffh Ng Domain at Ultra-High Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1299 b:13.6 occ:1.00 OE2 B:GLU46 2.3 17.7 0.4 O A:HOH2330 2.4 19.3 1.0 O A:HOH2328 2.4 17.3 1.0 O A:HOH2327 2.4 15.2 1.0 O A:HOH2329 2.4 20.4 1.0 OE1 B:GLU46 2.5 12.4 0.6 OE2 B:GLU46 2.5 12.8 0.6 OE1 B:GLU46 2.6 15.4 0.4 CD B:GLU46 2.8 15.9 0.4 CD B:GLU46 2.9 11.3 0.6 HE1 B:HIS261 3.6 13.0 0.4 H A:GLY295 3.9 14.2 0.5 O A:HOH2321 4.3 18.6 1.0 H A:GLY295 4.3 14.2 0.5 CG B:GLU46 4.3 13.2 0.4 HA A:MET294 4.3 13.9 0.5 HA A:MET294 4.3 16.4 0.5 CG B:GLU46 4.3 11.7 0.6 CE1 B:HIS261 4.4 9.9 0.4 O A:HOH2323 4.4 29.5 1.0 O A:HOH2322 4.5 38.8 1.0 O B:HOH2222 4.5 24.8 1.0 O B:HOH2048 4.6 22.0 1.0 O A:HOH2320 4.6 28.4 1.0 HG2 B:GLU46 4.6 13.4 0.4 O A:GLY293 4.7 17.3 1.0 N A:GLY295 4.7 13.2 0.5 HG2 B:GLU46 4.7 11.4 0.6 HG3 B:GLU46 4.7 13.4 0.4 HG3 B:GLU46 4.7 11.4 0.6 O A:GLY295 4.8 13.6 0.5 NE2 B:HIS261 4.9 16.7 0.6 HB3 B:GLU46 4.9 11.5 0.4 N A:GLY295 4.9 14.2 0.5

Calcium binding site 2 out of 2 in the Gmppcp Complex of Srp Gtpase Ffh Ng Domain at Ultra-High Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Gmppcp Complex of Srp Gtpase Ffh Ng Domain at Ultra-High Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1300 b:20.4 occ:0.60 O A:HOH2332 2.3 32.9 1.0 O A:HOH2331 2.3 33.9 1.0 O A:HOH2324 2.4 40.4 1.0 OE1 A:GLU207 2.4 42.6 0.5 OE2 A:GLU207 2.5 17.3 0.5 OE1 A:GLU207 2.5 15.8 0.5 CD A:GLU207 2.8 14.0 0.5 CD A:GLU207 3.3 30.7 0.5 OE2 A:GLU207 3.7 51.5 0.5 HH11 A:ARG204 3.8 19.4 1.0 HD3 A:ARG204 3.9 17.2 1.0 CG A:GLU207 4.3 15.2 0.5 O A:HOH2326 4.4 20.6 1.0 HA A:ARG204 4.4 14.7 1.0 HD2 A:ARG204 4.5 17.1 1.0 NH1 A:ARG204 4.5 20.0 1.0 CG A:GLU207 4.5 27.1 0.5 HG3 A:GLU207 4.6 14.9 0.5 HG3 A:GLU207 4.6 27.1 0.5 HB2 A:GLU207 4.6 19.5 0.5 CD A:ARG204 4.7 17.8 1.0 HG2 A:GLU207 4.7 14.6 0.5 HH12 A:ARG204 4.8 19.3 1.0 HB2 A:ARG204 4.9 15.1 1.0 O A:HOH2325 5.0 24.7 1.0

U.D.Ramirez, P.J.Focia, D.M.Freymann. Nucleotide-Binding Flexibility in Ultrahigh-Resolution Structures of the Srp Gtpase Ffh Acta Crystallogr.,Sect.D V. 64 1043 2008.
ISSN: ISSN 0907-4449
PubMed: 18931411
DOI: 10.1107/S090744490802444X