Atomistry » Calcium » PDB 2c5d-2cn3 » 2cft
Atomistry »
  Calcium »
    PDB 2c5d-2cn3 »
      2cft »

Calcium in PDB 2cft: Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate

Enzymatic activity of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate

All present enzymatic activity of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate:
3.1.3.74;

Protein crystallography data

The structure of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate, PDB code: 2cft was solved by B.S.Kang, H.J.Cho, K.J.Kim, O.S.Kwon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.16 / 1.8
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.303, 54.303, 210.190, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 22.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate (pdb code 2cft). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate, PDB code: 2cft:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2cft

Go back to Calcium Binding Sites List in 2cft
Calcium binding site 1 out of 2 in the Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1297

b:19.4
occ:1.00
O1P A:PLP1296 2.3 20.9 1.0
OD1 A:ASP238 2.4 19.9 1.0
O A:HOH2197 2.4 18.4 1.0
O A:ASP27 2.4 19.3 1.0
O A:HOH2191 2.4 20.7 1.0
OD2 A:ASP25 2.5 21.8 1.0
OD1 A:ASP25 2.7 18.6 1.0
CG A:ASP25 2.9 19.0 1.0
CG A:ASP238 3.3 21.7 1.0
C A:ASP27 3.5 20.2 1.0
P A:PLP1296 3.6 19.6 1.0
OD2 A:ASP238 3.7 21.8 1.0
O A:HOH2193 3.9 30.0 1.0
O3P A:PLP1296 4.0 17.2 1.0
N A:ASP27 4.1 19.6 1.0
OD2 A:ASP243 4.1 23.9 1.0
CA A:ASP27 4.2 20.9 1.0
O2P A:PLP1296 4.2 21.5 1.0
CB A:ASP27 4.3 21.8 1.0
O A:HOH2234 4.3 23.9 1.0
CB A:ASP25 4.4 19.1 1.0
N A:GLY28 4.6 19.5 1.0
CB A:ASP238 4.6 20.3 1.0
N A:ASP238 4.6 19.1 1.0
NZ A:LYS213 4.7 15.7 1.0
N A:CYS26 4.7 20.3 1.0
OD1 A:ASP243 4.7 19.7 1.0
OD2 A:ASP27 4.7 35.4 1.0
O4P A:PLP1296 4.7 23.0 1.0
C A:CYS26 4.7 20.5 1.0
CG2 A:VAL29 4.8 21.3 1.0
CG A:ASP243 4.8 21.4 1.0
CG A:ARG239 4.8 20.1 0.5
CA A:GLY28 4.8 19.3 1.0
NE A:ARG239 4.9 24.9 0.5

Calcium binding site 2 out of 2 in 2cft

Go back to Calcium Binding Sites List in 2cft
Calcium binding site 2 out of 2 in the Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase with Its Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1298

b:30.6
occ:1.00
NE A:ARG263 3.2 26.0 1.0
O A:HOH2214 3.3 24.9 1.0
N A:LEU264 3.4 24.2 1.0
CA A:ARG263 3.8 23.4 1.0
CD2 A:LEU258 4.0 25.1 1.0
NH2 A:ARG263 4.0 29.7 1.0
CD A:ARG263 4.0 27.1 1.0
CZ A:ARG263 4.0 27.9 1.0
CD1 A:LEU258 4.0 25.4 1.0
CB A:LEU264 4.0 25.9 1.0
CB A:ARG263 4.1 23.6 1.0
CB A:LEU258 4.1 22.2 1.0
C A:ARG263 4.1 24.4 1.0
CG A:LEU258 4.3 22.1 1.0
CA A:LEU264 4.3 25.6 1.0
CG A:ARG263 4.7 24.8 1.0
O A:LEU258 4.7 21.4 1.0
O A:SER262 4.8 23.6 1.0

Reference:

B.S.Kang, H.J.Cho, K.J.Kim, O.S.Kwon. Crystal Structure of Human Pyridoxal 5-Phosphate Phosphatase To Be Published.
Page generated: Sat Dec 12 03:34:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy