Calcium in PDB 2chh: Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin

The structure of Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin, PDB code: 2chh was solved by E.P.Mitchell, M.Wimmerova, A.Imberty, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.47 / 1.00
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	59.292, 62.064, 74.893, 90.00, 90.00, 90.00
R / Rfree (%)	10 / 11

The binding sites of Calcium atom in the Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin (pdb code 2chh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin, PDB code: 2chh:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1114 b:5.4 occ:1.00 O A:ASN21 2.3 5.8 1.0 OD1 A:ASP103 2.3 5.4 1.0 OD1 A:ASN102 2.3 5.6 1.0 OD2 A:ASP100 2.4 6.7 1.0 O3 A:MAN1117 2.5 6.1 0.8 O3 A:BMA1118 2.5 6.1 0.2 O2 A:MAN1117 2.5 6.2 0.8 O2 A:BMA1118 2.5 6.2 0.2 OD1 A:ASP100 3.0 6.4 1.0 CG A:ASP100 3.0 6.0 1.0 C3 A:MAN1117 3.4 6.2 0.8 C3 A:BMA1118 3.4 6.2 0.2 CG A:ASN102 3.4 5.7 1.0 C2 A:MAN1117 3.4 6.2 0.8 C2 A:BMA1118 3.4 6.2 0.2 C A:ASN21 3.5 5.5 1.0 CG A:ASP103 3.6 4.8 1.0 CA A:CA1115 3.7 4.8 1.0 ND2 A:ASN102 3.8 6.8 1.0 C4 A:MAN1117 3.9 5.7 0.8 C4 A:BMA1118 3.9 5.7 0.2 CB A:ASN21 4.1 6.0 1.0 CA A:ASP103 4.2 5.0 1.0 N A:ASP103 4.3 5.0 1.0 N A:ALA22 4.4 5.9 1.0 CA A:ALA22 4.4 5.8 1.0 OD2 A:ASP103 4.4 5.6 1.0 CB A:ASP103 4.4 5.1 1.0 C A:ASN102 4.5 5.2 1.0 CA A:ASN21 4.5 5.8 1.0 CB A:ASP100 4.5 7.2 1.0 O A:HOH2211 4.5 12.0 1.0 OD2 A:ASP98 4.5 7.6 1.0 O4 A:MAN1117 4.5 5.9 0.8 O4 A:BMA1118 4.5 5.9 0.2 CB A:ASN102 4.7 5.7 1.0 C1 A:MAN1117 4.7 6.7 0.8 C1 A:BMA1118 4.7 6.7 0.2 O A:ASN102 4.8 5.9 1.0 N A:ASN102 4.9 5.5 1.0 CA A:ASN102 4.9 5.4 1.0 CB A:ALA22 4.9 6.7 1.0 OD1 A:ASP98 5.0 7.8 1.0

Calcium binding site 2 out of 2 in the Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1115 b:4.8 occ:1.00 OD1 A:ASP98 2.3 7.8 1.0 OD1 A:ASP100 2.4 6.4 1.0 OE2 A:GLU94 2.4 6.0 1.0 OD2 A:ASP103 2.4 5.6 1.0 OE1 A:GLU94 2.5 6.0 1.0 O3 A:MAN1117 2.5 6.1 0.8 O3 A:BMA1118 2.5 6.1 0.2 O4 A:MAN1117 2.6 5.9 0.8 O4 A:BMA1118 2.6 5.9 0.2 OD1 A:ASP103 2.6 5.4 1.0 CD A:GLU94 2.8 5.3 1.0 CG A:ASP103 2.9 4.8 1.0 C4 A:MAN1117 3.3 5.7 0.8 C4 A:BMA1118 3.3 5.7 0.2 CG A:ASP98 3.4 6.9 1.0 C3 A:MAN1117 3.4 6.2 0.8 C3 A:BMA1118 3.4 6.2 0.2 CG A:ASP100 3.4 6.0 1.0 OD2 A:ASP98 3.7 7.6 1.0 CA A:CA1114 3.7 5.4 1.0 OD2 A:ASP100 4.0 6.7 1.0 O A:HOH2201 4.0 7.4 1.0 OD1 A:ASP95 4.0 6.7 1.0 N A:ASP100 4.1 7.1 1.0 CG A:GLU94 4.2 5.9 1.0 CB A:ASP103 4.4 5.1 1.0 N A:ASN99 4.5 8.0 1.0 N A:ASP95 4.5 5.7 1.0 N A:TYR101 4.5 6.1 1.0 CB A:ASP100 4.5 7.2 1.0 CA A:GLU94 4.7 5.3 1.0 CB A:ASP98 4.7 7.6 1.0 N A:GLY96 4.7 5.7 1.0 C2 A:MAN1117 4.7 6.2 0.8 C2 A:BMA1118 4.7 6.2 0.2 N A:ASP98 4.7 7.1 1.0 OD1 A:ASN102 4.7 5.6 1.0 CA A:ASP100 4.7 7.0 1.0 C5 A:MAN1117 4.8 6.1 0.8 C5 A:BMA1118 4.8 6.1 0.2 O2 A:MAN1117 4.8 6.2 0.8 O2 A:BMA1118 4.8 6.2 0.2 CG A:ASP95 4.9 6.0 1.0 CB A:GLU94 4.9 5.7 1.0 C A:ASP98 4.9 7.7 1.0 CA A:ASP98 5.0 7.5 1.0

D.Sudakevitz, N.Kostlanova, G.Blatman-Jan, E.P.Mitchell, B.Lerrer, M.Wimmerova, D.J.Katcoff, A.Imberty, N.Gilboa-Garber. A New Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin Rs-Iil Structurally Resembling the Pseudomonas Aeruginosa Fucose-Specific Lectin Pa-Iil. Mol. Microbiol. V. 52 691 2004.
ISSN: ISSN 0950-382X
PubMed: 15101976
DOI: 10.1111/J.1365-2958.2004.04020.X