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Calcium in PDB 2cij: Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine

Enzymatic activity of Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine

All present enzymatic activity of Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine:
3.4.17.21;

Protein crystallography data

The structure of Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine, PDB code: 2cij was solved by C.Barinka, A.Plechanovova, L.Rulisek, P.Mlcochova, P.Majer, B.S.Slusher, R.Hilgenfeld, J.R.Mesters, J.Konvalinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.40
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 102.692, 130.777, 160.303, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 21.9

Other elements in 2cij:

The structure of Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine (pdb code 2cij). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine, PDB code: 2cij:

Calcium binding site 1 out of 1 in 2cij

Go back to Calcium Binding Sites List in 2cij
Calcium binding site 1 out of 1 in the Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) with Bound Methionine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1753

b:14.8
occ:1.00
 O A:TYR272 2.3 18.9 1.0
OE2 A:GLU436 2.4 16.6 1.0
OE1 A:GLU433 2.4 15.4 1.0
O A:THR269 2.4 16.4 1.0
O A:HOH2055 2.4 14.5 1.0
OG1 A:THR269 2.5 15.3 1.0
OE2 A:GLU433 2.6 13.4 1.0
CD A:GLU433 2.8 14.2 1.0
C A:THR269 3.3 17.4 1.0
CB A:THR269 3.3 17.7 1.0
C A:TYR272 3.4 17.8 1.0
CD A:GLU436 3.4 15.3 1.0
OE1 A:GLU436 3.8 17.5 1.0
CA A:THR269 3.9 16.9 1.0
N A:TYR272 4.0 17.2 1.0
N A:ALA274 4.2 17.3 1.0
CA A:PRO273 4.2 17.4 1.0
CB A:ASP266 4.2 15.2 1.0
N A:PRO273 4.2 16.8 1.0
N A:PRO270 4.3 18.1 1.0
C A:PRO273 4.3 17.4 1.0
CG A:GLU433 4.3 11.9 1.0
CA A:TYR272 4.4 17.5 1.0
O A:ASP266 4.4 18.3 1.0
CA A:PRO270 4.5 17.6 1.0
N A:ASP266 4.5 16.4 1.0
O A:ALA264 4.6 15.9 1.0
N A:GLY271 4.6 16.2 1.0
N A:THR269 4.6 18.7 1.0
CG A:GLU436 4.7 16.9 1.0
CG2 A:THR269 4.7 15.4 1.0
C A:PRO270 4.8 17.1 1.0
OD2 A:ASP266 4.8 21.4 1.0
CA A:ASP266 4.8 15.4 1.0
CB A:ALA274 4.9 17.8 1.0
CA A:GLU433 4.9 13.3 1.0
CB A:GLU436 4.9 16.7 1.0
CA A:ALA274 5.0 18.2 1.0

Reference:

J.R.Mesters, R.Hilgenfeld. Glutamate Carboxypeptidase II Handbook of Metalloproteins V. 4 681 2011.
Page generated: Sat Dec 12 03:34:06 2020

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