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Calcium in PDB 2clp: Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3

Protein crystallography data

The structure of Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3, PDB code: 2clp was solved by J.E.Debreczeni, B.D.Marsden, C.Johansson, K.Kavanagh, K.Guo, C.Smee, O.Gileadi, A.Turnbull, E.Papagrigoriou, F.Von Delft, A.Edwards, C.Arrowsmith, J.Weigelt, M.Sundstrom, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 164.40 / 3.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 126.963, 126.963, 490.497, 90.00, 90.00, 120.00
R / Rfree (%) 23.9 / 25.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3 (pdb code 2clp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3, PDB code: 2clp:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 2clp

Go back to Calcium Binding Sites List in 2clp
Calcium binding site 1 out of 4 in the Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1362

b:37.2
occ:1.00
CE1 A:HIS269 2.8 60.8 1.0
NE2 A:HIS269 3.3 61.0 1.0
OE2 A:GLU272 3.7 57.0 1.0
ND1 A:HIS269 3.8 60.2 1.0
CD2 A:HIS269 4.5 60.3 1.0
CG A:HIS269 4.7 58.8 1.0
CD A:GLU272 4.8 55.6 1.0

Calcium binding site 2 out of 4 in 2clp

Go back to Calcium Binding Sites List in 2clp
Calcium binding site 2 out of 4 in the Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1362

b:41.9
occ:1.00
CE1 C:HIS269 2.6 59.4 1.0
NE2 C:HIS269 3.5 60.0 1.0
ND1 C:HIS269 3.6 59.3 1.0
OE2 C:GLU272 3.7 62.5 1.0
CD C:GLU272 4.6 58.8 1.0
OE1 C:GLU272 4.6 62.4 1.0
CD2 C:HIS269 4.7 58.8 1.0
CG C:HIS269 4.8 57.5 1.0

Calcium binding site 3 out of 4 in 2clp

Go back to Calcium Binding Sites List in 2clp
Calcium binding site 3 out of 4 in the Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1362

b:36.0
occ:1.00
CE1 E:HIS269 2.8 60.9 1.0
OE2 E:GLU272 3.5 59.0 1.0
NE2 E:HIS269 3.6 61.0 1.0
ND1 E:HIS269 3.7 60.6 1.0
CD E:GLU272 4.5 58.1 1.0
OE1 E:GLU272 4.6 58.5 1.0
CD2 E:HIS269 4.7 60.0 1.0
CG E:HIS269 4.8 58.4 1.0

Calcium binding site 4 out of 4 in 2clp

Go back to Calcium Binding Sites List in 2clp
Calcium binding site 4 out of 4 in the Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1362

b:30.2
occ:1.00
CE1 G:HIS269 2.8 54.0 1.0
OE2 G:GLU272 3.0 57.3 1.0
ND1 G:HIS269 3.5 52.8 1.0
CD G:GLU272 3.8 54.9 1.0
OE1 G:GLU272 3.8 56.9 1.0
NE2 G:HIS269 3.8 54.4 1.0
CG G:HIS269 4.7 52.4 1.0
CD2 G:HIS269 4.9 53.2 1.0

Reference:

J.E.Debreczeni, C.Johansson, K.Kavanagh, A.Turnbull, E.Papagrigoriou, F.Von Delft, A.Edwards, C.Arrowsmith, J.Weigelt, M.Sundstrom, U.Oppermann. Crystal Structure of Human Aflatoxin B1 Aldehyde Reductase Member 3 To Be Published.
Page generated: Sat Dec 12 03:34:11 2020

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