Atomistry » Calcium » PDB 2cn6-2dbx » 2cn7
Atomistry »
  Calcium »
    PDB 2cn6-2dbx »
      2cn7 »

Calcium in PDB 2cn7: Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant

Enzymatic activity of Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant

All present enzymatic activity of Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant:
1.16.3.1;

Protein crystallography data

The structure of Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant, PDB code: 2cn7 was solved by L.Toussaint, R.R.Crichton, J.P.Declercq, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 104.83 / 1.75
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.207, 181.207, 181.207, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant (pdb code 2cn7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant, PDB code: 2cn7:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 2cn7

Go back to Calcium Binding Sites List in 2cn7
Calcium binding site 1 out of 3 in the Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca210

b:43.4
occ:0.50
OE1 A:GLN86 2.6 26.5 1.0
O A:HOH2110 3.8 32.5 1.0
CD A:GLN86 3.8 24.2 1.0
NE2 A:GLN86 4.4 26.4 1.0
CG A:GLN86 5.0 21.3 1.0

Calcium binding site 2 out of 3 in 2cn7

Go back to Calcium Binding Sites List in 2cn7
Calcium binding site 2 out of 3 in the Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca211

b:35.8
occ:0.33
O A:HOH2152 2.3 33.5 1.0
OE1 A:GLU134 2.4 27.4 1.0
CD A:GLU134 3.6 25.6 1.0
O A:HOH2153 3.8 42.0 1.0
OD1 A:ASP131 4.2 23.9 1.0
OE2 A:GLU134 4.2 26.6 1.0
CB A:GLU134 4.7 24.0 1.0
CG A:GLU134 4.8 25.5 1.0
CA A:ASP131 4.9 20.5 1.0
CB A:ASP131 5.0 21.4 1.0

Calcium binding site 3 out of 3 in 2cn7

Go back to Calcium Binding Sites List in 2cn7
Calcium binding site 3 out of 3 in the Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Recombinant Human H Ferritin, K86Q, E27D and E107D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca218

b:20.9
occ:1.00
OE1 A:GLN58 2.3 20.8 1.0
OE1 A:GLU61 2.4 25.2 1.0
O A:HOH2087 2.4 23.0 1.0
O A:HOH2126 2.4 23.1 1.0
O A:HOH2081 2.4 24.4 1.0
O A:HOH2083 2.5 22.1 1.0
O A:HOH2052 2.5 23.8 1.0
CD A:GLN58 3.5 18.9 1.0
CD A:GLU61 3.5 26.9 1.0
O A:HOH2085 4.2 37.8 1.0
CB A:ALA144 4.2 16.4 1.0
OE2 A:GLU62 4.2 24.6 1.0
CG A:GLU61 4.2 25.7 1.0
CG A:GLN58 4.3 17.3 1.0
O A:HOH2160 4.3 19.6 1.0
O A:HOH2086 4.3 24.2 1.0
CB A:GLN58 4.3 16.6 1.0
OE2 A:GLU61 4.4 32.1 1.0
CA A:GLN58 4.5 16.6 1.0
OD2 A:ASP107 4.5 18.7 1.0
NE2 A:GLN58 4.5 20.5 1.0
CB A:GLU61 4.6 21.1 1.0
O A:GLN58 4.9 16.2 1.0
OH A:TYR34 4.9 19.9 1.0

Reference:

L.Toussaint, L.Bertrand, L.Hue, R.R.Crichton, J.P.Declercq. High-Resolution X-Ray Structures of Human Apoferritin H-Chain Mutants Correlated with Their Activity and Metal-Binding Sites. J.Mol.Biol. V. 365 440 2007.
ISSN: ISSN 0022-2836
PubMed: 17070541
DOI: 10.1016/J.JMB.2006.10.010
Page generated: Sat Dec 12 03:34:19 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy