Atomistry » Calcium » PDB 2eek-2f3y » 2es4
Atomistry »
  Calcium »
    PDB 2eek-2f3y »
      2es4 »

Calcium in PDB 2es4: Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase

Enzymatic activity of Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase

All present enzymatic activity of Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase:
3.1.1.3;

Protein crystallography data

The structure of Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase, PDB code: 2es4 was solved by K.Pauwels, L.Wyns, J.Tommassen, S.N.Savvides, P.Van Gelder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 183.000, 75.700, 116.600, 90.00, 117.60, 90.00
R / Rfree (%) 19.9 / 21.9

Other elements in 2es4:

The structure of Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase also contains other interesting chemical elements:

Iodine (I) 8 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase (pdb code 2es4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase, PDB code: 2es4:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2es4

Go back to Calcium Binding Sites List in 2es4
Calcium binding site 1 out of 2 in the Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca999

b:31.4
occ:1.00
O A:HOH1064 2.3 32.6 1.0
O A:VAL295 2.4 35.0 1.0
OD1 A:ASP287 2.4 27.0 1.0
O A:GLN291 2.5 26.6 1.0
O A:HOH1056 2.5 32.9 1.0
OD2 A:ASP241 2.5 41.3 1.0
C A:GLN291 3.4 26.7 1.0
CG A:ASP287 3.5 27.1 1.0
CG A:ASP241 3.5 45.4 1.0
C A:VAL295 3.6 34.5 1.0
N A:LEU292 3.7 27.7 1.0
CA A:ARG296 4.0 34.8 1.0
ND2 A:ASN284 4.1 32.5 1.0
OD2 A:ASP287 4.2 28.8 1.0
OD1 A:ASP241 4.2 43.5 1.0
OD1 A:ASN284 4.2 27.0 1.0
N A:ARG296 4.2 34.4 1.0
CA A:ASP287 4.3 23.3 1.0
N A:ASP287 4.3 22.1 1.0
CB A:ASP241 4.4 45.3 1.0
O A:HOH1073 4.4 36.0 1.0
OG A:SER243 4.5 43.1 1.0
CB A:ASP287 4.5 24.8 1.0
CB A:ARG296 4.5 35.2 1.0
OG1 A:THR244 4.6 35.6 1.0
CG A:ASN284 4.6 29.5 1.0
CA A:VAL295 4.7 34.3 1.0
C A:LEU286 4.7 22.9 1.0
CA A:GLN291 4.8 26.4 1.0
CB A:VAL295 4.9 33.9 1.0
CB A:LEU286 4.9 27.0 1.0

Calcium binding site 2 out of 2 in 2es4

Go back to Calcium Binding Sites List in 2es4
Calcium binding site 2 out of 2 in the Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Burkholderia Glumae Lipase-Specific Foldase in Complex with Its Cognate Lipase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca998

b:25.2
occ:1.00
OD1 B:ASP287 2.4 23.0 1.0
O B:GLN291 2.4 19.4 1.0
O B:VAL295 2.4 25.3 1.0
O B:HOH1066 2.5 25.2 1.0
OD2 B:ASP241 2.5 30.0 1.0
O B:HOH1087 2.5 27.0 1.0
C B:GLN291 3.4 20.0 1.0
CG B:ASP287 3.5 22.3 1.0
CG B:ASP241 3.6 30.9 1.0
C B:VAL295 3.6 26.1 1.0
N B:LEU292 3.6 22.0 1.0
CA B:ARG296 3.9 28.2 1.0
N B:ARG296 4.2 26.6 1.0
OD2 B:ASP287 4.3 18.9 1.0
O B:HOH1035 4.3 23.6 1.0
OD1 B:ASN284 4.4 16.9 1.0
N B:ASP287 4.4 16.5 1.0
CA B:ASP287 4.4 16.1 1.0
OD1 B:ASP241 4.4 33.0 1.0
CB B:ASP241 4.4 31.7 1.0
ND2 B:ASN284 4.5 16.7 1.0
OG B:SER243 4.5 29.6 1.0
CB B:ARG296 4.5 29.1 1.0
CB B:ASP287 4.5 17.6 1.0
OG1 B:THR244 4.7 24.9 1.0
CA B:VAL295 4.8 27.3 1.0
CA B:GLN291 4.8 18.9 1.0
C B:LEU286 4.8 19.4 1.0
CG B:ASN284 4.8 19.9 1.0
CB B:LEU286 4.9 22.5 1.0
CB B:VAL295 5.0 28.7 1.0

Reference:

K.Pauwels, A.Lustig, L.Wyns, J.Tommassen, S.N.Savvides, P.Van Gelder. Structure of A Membrane-Based Steric Chaperone in Complex with Its Lipase Substrate. Nat.Struct.Mol.Biol. V. 13 374 2006.
ISSN: ISSN 1545-9993
PubMed: 16518399
DOI: 10.1038/NSMB1065
Page generated: Sat Dec 12 03:36:36 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy